Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3537 111 1e-19 >seq3537 Length=3457499 Score = 111 bits (122), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876 ||||||||| || || || | |||||| |||||||| ||||||||||| ||||| || Sbjct 3064186 AATATAAGTTTCAATGAGCAAAGAATACATCTCAGAATGAATATTTTCTATGGCAATTTG 3064127 Query 4877 AAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAA 4936 ||| || || || || | ||||| | | || || || | || ||||| || | | Sbjct 3064126 AAAGCCATAGAAACAACGTGCTTCGGGAATTTTCACCTCCTGACTGAATCTCTCAATCAG 3064067 Query 4937 GTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTA 4996 ||||| || || ||||| ||| || ||||| || || || |||||||| |||||||| Sbjct 3064066 ATTTTCATTAACGATACCATCAGAAGCGGCAAAGAATGCTAAGACATGAGAGATAAAGTA 3064007 Query 4997 CTGTTCGTCAGGCTTAAGTTTT---TTCCAGT 5025 | ||||| | || || ||| ||||||| Sbjct 3064006 TTTCTCGTCGGAATTTAGCTTTTCATTCCAGT 3063975 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 5049 ACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGA 5108 |||||||| | |||||||| || ||| | |||||||| |||||| ||| ||||||||| Sbjct 3063787 ACTTCTTCTATGGTCCAAAAAGAGGCTACGGCTTTTTTATACATATCCCAGATATCAGGA 3063728 Query 5109 TACTGAATCGGAAGTATGACAAATCTGTT 5137 |||||||| |||| || ||||| | ||| Sbjct 3063727 TACTGAATAGGAAAAATTACAAAACGGTT 3063699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427025538824459