Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31]
4,623 sequences; 267,973,152 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq4212 125 1e-23
seq3537 118 1e-21
seq3783 91.5 2e-13
>seq4212
Length=4365329
Score = 125 bits (138), Expect = 1e-23
Identities = 195/276 (71%), Gaps = 2/276 (1%)
Strand=Plus/Minus
Query 78370 GAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCAT 78429
|||| | || ||||| || || | | ||| | |||||||||| ||||| || ||||
Sbjct 3414560 GAAATTACCTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGAGTCGGTGAAGCAT 3414501
Query 78430 GCGTAAACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCAT 78488
| ||||| || ||| || || || ||| |||||||| || || || ||||| |
Sbjct 3414500 GTGTAAAATATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTGTCAATGTCATTT 3414442
Query 78489 TGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTA 78548
| |||||| || | ||||| | |||||||||||| ||||| || || || |||||
Sbjct 3414441 TCATGAATACCAATAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCG 3414382
Query 78549 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 78608
|| ||||| | || ||| | | || | ||||||||||||| ||| || || |||
Sbjct 3414381 TTGATTTTTAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAG 3414322
Query 78609 TCTCTCTCGTAAATAATAACAGAATTTAGTTTATCT 78644
|| | ||||| || ||| |||||| ||||| |||
Sbjct 3414321 TCACGATCGTATATTATAGCAGAATCCAGTTTCTCT 3414286
Score = 105 bits (116), Expect = 9e-18
Identities = 216/317 (68%), Gaps = 8/317 (3%)
Strand=Plus/Minus
Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583
||||||||||||| ||| | ||| || |||| | |||| ||||||||| | ||||
Sbjct 3415685 TACCAATAGGTCTGTGTTTACGATTAGATGTTTTCGTTTCTTCGATAGGATAAAAGTTAA 3415626
Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643
||| || | ||||| ||||| | | ||| ||||| | || || |||||| |
Sbjct 3415625 CGTCAATGACTTTATCTAGATTACGAGTAACGACTTTCGCGACTGTTTTAAGTTTATCGA 3415566
Query 77644 AATCAAA---TCTTCCATCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTAC 77697
|||| || | | |||| |||| |||||||| | ||| |||||||||| ||| |
Sbjct 3415565 AATCGAAAGTTTTGGTGTCTATATTAACGAACATGTTGACAGCGATAGATGCTAAATTGC 3415506
Query 77698 AAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATT 77757
| || || || || || | |||| || || ||||| || | || || ||||
Sbjct 3415505 ATACAGCGACTTCTCCAGGACCAGAGTATTCAATAATTTCGGTGCACAAGTTGCTGCATT 3415446
Query 77758 TGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGC-ATGAGTCCTTATAAAGAATA 77816
|||||||||| | || || || || ||| ||||| |||| || || ||||| |||
Sbjct 3415445 TGATAGTGCCTATATGCTGATGATTTGATTTTCGATTGCAATGA-TCTTTGTAAAGCATA 3415387
Query 77817 AACGGAGTCCCGGTTTC 77833
| || || || |||||
Sbjct 3415386 TAAGGTGTTCCAGTTTC 3415370
Score = 96.9 bits (106), Expect = 5e-15
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 78744 CTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATA 78803
||||| ||| || |||||||||||||| ||||| || | |||||||||||||| |||
Sbjct 3414070 CTAAAACTTTTCTTGGTTTCCTTGTGTAGGTTAGACACGTCAATTCTTGCAGCTAGTATA 3414011
Query 78804 GCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATC 78859
|||||||||||||||| || | || ||||| |||| || |||||| ||||
Sbjct 3414010 GCATAATCAGGATGTTTAGTTGCCATTGTAGCTGCAGTTTCAGCTGCTAAATTATC 3413955
Score = 93.3 bits (102), Expect = 6e-14
Identities = 104/139 (75%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 77095 TTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAG 77154
||||| ||| || | ||| ||||| || || ||||||||| |||||||| | |
Sbjct 3416264 TTAAATCTCGCAGTAAATGCGGATTGACAATGATAAATTCTCCCGACAATACACGCCTCA 3416205
Query 77155 TGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAG 77214
|| ||||| || ||||||||||| | |||||| || || || ||||| || || || |
Sbjct 3416204 CATAGATATTGCTTGTATATGGTTCAATAGATTCGTTATTCCCTAAAATCTGTGCTGTCG 3416145
Query 77215 AAGCAGTTGGCATAGGTGC 77233
| || ||||||||||||||
Sbjct 3416144 AGGCCGTTGGCATAGGTGC 3416126
Score = 84.2 bits (92), Expect = 3e-11
Identities = 99/131 (76%), Gaps = 6/131 (5%)
Strand=Plus/Minus
Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983
|| ||||||||| |||||||||||| | || || || |||||| ||| ||||| ||
Sbjct 3415187 TTTAAATTCATCACCCCAAACATCAGCTAAGCCGGGAGATTCATATGGACACATTAAGCT 3415128
Query 77984 CCAGTCACCATCTTCCTTA---ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT 78040
||| || | || || ||| || |||| |||||| ||||| |||||||||||| ||
Sbjct 3415127 CCA--CATC-TCGTCATTATATACACGTTCCATAAAAAGATCTGGTATCCATAGACCATA 3415071
Query 78041 AAATAGATCTC 78051
||||| ||||
Sbjct 3415070 AAATAAGTCTC 3415060
>seq3537
Length=3457499
Score = 118 bits (130), Expect = 1e-21
Identities = 161/222 (73%), Gaps = 7/222 (3%)
Strand=Plus/Minus
Query 48411 TAAGTATCTATTA--AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAA 48468
||||| || || | ||||| |||||| || || ||||||||||| || || || ||||
Sbjct 3064182 TAAGTTTCAATGAGCAAAGA--ATACATCTCAGAATGAATATTTTCTATGGCAATTTGAA 3064125
Query 48469 ATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAAT 48528
| || || ||||| | ||||| | || | |||||| || |||| ||| || ||
Sbjct 3064124 AGCCATAGAAACAACGTGCTTCGGGAATTTTCACCTCCTGACTGAATCTCTCAATCAGAT 3064065
Query 48529 TCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATT 48588
| ||||| || || |||||| ||| ||||| |||||||| ||||| ||||| ||||
Sbjct 3064064 TTTCATTAACGATACCATCAGAAGCGGCAAAGAATGCTAAGACATGAGAGATAAAGTATT 3064005
Query 48589 TTTCGTTGGAAGTCAG---TTTATTCCAGTCATTGATATCTT 48627
| |||| |||| | || || ||||||||| || | ||||
Sbjct 3064004 TCTCGTCGGAATTTAGCTTTTCATTCCAGTCCTTCTTGTCTT 3063963
Score = 84.2 bits (92), Expect = 3e-11
Identities = 157/228 (69%), Gaps = 11/228 (5%)
Strand=Plus/Minus
Query 47937 TTATAAAtt---tttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATA 47993
||||| ||| |||| |||||||||| | | | ||| || || |||||||| ||
Sbjct 3065579 TTATACATTACCTTTTCAAATCCTAATGCAACGAATAATCTGTCCGCGACGAATTCGATG 3065520
Query 47994 TATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGA 48053
||| | |||| ||| |||||||||||||| |||| ||| |||| || | ||| | |
Sbjct 3065519 TATTTACACATCCATTCGCAATTCATTCCTATCAGTTCAACCGGTAACGCTTGCGTCAAA 3065460
Query 48054 AACTCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTTAC-CGTTTCCTCACTTGG 48112
|| || | ||| || || ||||||| || || ||| | || || |||| ||
Sbjct 3065459 AATTCCTTTTCAATTTCTACGGCATCCATTACAATTGATTTCACACG----CTCAAATGA 3065404
Query 48113 TGG---ATACAACAAATGTTTAAACATTAAACATGCAAAATCACAATG 48157
||| | | | ||||||||||||||||| || ||||| || ||
Sbjct 3065403 TGGCTTTTGTACGATGTGTTTAAACATTAAACAGGCGAAATCGCAGTG 3065356
>seq3783
Length=2569584
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 78742 CACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAA 78801
|| |||| | || ||||| |||||||||||||| |||| ||| ||||| || ||||
Sbjct 868872 CATTAAAAACTTCCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGG 868931
Query 78802 TAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTA 78861
| |||||||| |||||||| | | ||| ||||| |||| || |||| | ||||||
Sbjct 868932 TTGCATAATCTGGATGTTGATTGATCATAGTCGCTGCAGTTTCAGCTGCTAGATTATCTA 868991
Query 78862 ACTCTATAGTTGTGACCCCA 78881
| || | ||||| || |||
Sbjct 868992 ATTCGGTTGTTGTTACTCCA 869011
Score = 84.2 bits (92), Expect = 3e-11
Identities = 123/173 (71%), Gaps = 6/173 (3%)
Strand=Plus/Plus
Query 77358 CCATTATATGTTTCATAAGGTCCTTCTGTTTCAG---CTAGTTCACAACTCGCTTCCAAT 77414
|| ||||||| |||||||| |||| |||||| ||| ||| ||||| ||||| |
Sbjct 867101 CCCTTATATGACTCATAAGGACCTT---TTTCAGTAGCTATTTCGCAACTAGCTTCTAGA 867157
Query 77415 GCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCA 77474
|| || ||||| | || || ||||| | ||||| || | ||||| | || |||
Sbjct 867158 GCGCCATAATAGAGAGTCTCAAAAATTTGAACGTTGAGTTCATTAGCTTCTTTGCTTTCA 867217
Query 77475 AACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACC 77527
|| || || | | |||||| |||||||||||||| || || ||||||||
Sbjct 867218 AATGGGTATCTCATTAAAATAAATGCATCTGCTAATCCTTGTACACCAATACC 867270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694628656826720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |