Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4212 102 1e-16 seq3783 87.8 3e-12 >seq4212 Length=4365329 Score = 102 bits (112), Expect = 1e-16 Identities = 189/275 (69%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 76965 GAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCAT 77024 |||| | || ||||| || || | | ||| | |||||||| | || || || |||| Sbjct 3414560 GAAATTACCTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGAGTCGGTGAAGCAT 3414501 Query 77025 GAGTGAACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCAT 77083 | || || || ||| || || || ||| |||||||| || ||| || || || | Sbjct 3414500 GTGTAAAATATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTGTCAATGTCATTT 3414442 Query 77084 TGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTA 77143 | |||||| || | ||| || | |||||||||||| ||||| | || || ||||| Sbjct 3414441 TCATGAATACCAATAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCG 3414382 Query 77144 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 77203 || ||||| | || ||| | | || | ||||||||||||| ||| || || ||| Sbjct 3414381 TTGATTTTTAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAG 3414322 Query 77204 TCTCTTTCGTAAATAATAACCGAATTTAGTTTGTC 77238 || | ||||| || ||| | |||| ||||| || Sbjct 3414321 TCACGATCGTATATTATAGCAGAATCCAGTTTCTC 3414287 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/169 (73%), Gaps = 8/169 (5%) Strand=Plus/Minus Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017 ||||||||||||||| || | | | |||||| ||||||||| || ||||| ||||| || Sbjct 3415921 ATATGTTTCGTAAGTGCCCTTTTCTGCAGCTAATTCGCAACTAGCTTCTAAGGCACCATA 3415862 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 ||||| |||||||| || || | || || |||| ||| || || || || ||||| Sbjct 3415861 ATAAAGCGTTTCGAAGATTTTAATGTTGAGTTCTTTCGCCTCTTTGCTTTCGAAGGGATA 3415802 Query 76078 ----ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACC 76122 || ||| || || ||||||||||| || || | ||| ||||| Sbjct 3415801 TCTCAT-TAACAG---GAACGCATCTGCTAGCCCTTGTATTCCTATACC 3415757 Score = 96.9 bits (106), Expect = 5e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715 |||| || || ||| ||| || | ||| | ||||| ||| || | ||| ||||| Sbjct 3416298 TTCTGCATATCCGCATCCCATAAATCTCTGGAGATTAAATCTCGCAGTAAATGCGGATTG 3416239 Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775 ||||| ||||||||| |||||||| | | || ||||| || ||||||||||| Sbjct 3416238 ACAATGATAAATTCTCCCGACAATACACGCCTCACATAGATATTGCTTGTATATGGTTCA 3416179 Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGC 75828 | |||||| || || || ||||| || || || || || || ||||||||||| Sbjct 3416178 ATAGATTCGTTATTCCCTAAAATCTGTGCTGTCGAGGCCGTTGGCATAGGTGC 3416126 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/142 (75%), Gaps = 6/142 (4%) Strand=Plus/Minus Query 76508 GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA 76567 ||||| || || ||||||||| |||||||||||| | || || ||| |||||| ||| Sbjct 3415198 GTATACAATTCTTTAAATTCATCACCCCAAACATCAGCTAAGCCGGGAGATTCATATGGA 3415139 Query 76568 CACATCAATGACCACTCACCATCTTCCTTA---ACCCGTTTCATAAAGAGATCAGGTATC 76624 ||||| || |||| | | || || ||| || |||| |||||| ||||| |||||| Sbjct 3415138 CACATTAAGCTCCAC--ATC-TCGTCATTATATACACGTTCCATAAAAAGATCTGGTATC 3415082 Query 76625 CATAGAGCAATAAATAGATCTC 76646 |||||| || ||||| |||| Sbjct 3415081 CATAGACCATAAAATAAGTCTC 3415060 Score = 89.7 bits (98), Expect = 7e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 77337 CGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAA 77396 ||||||| ||| || |||||||||||||| || || ||| | ||||| |||||||| | Sbjct 3414072 CGCTAAAACTTTTCTTGGTTTCCTTGTGTAGGTTAGACACGTCAATTCTTGCAGCTAGTA 3414013 Query 77397 TTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTA 77456 | ||||| |||||||||| || | || ||||| |||| || |||||| |||| | Sbjct 3414012 TAGCATAATCAGGATGTTTAGTTGCCATTGTAGCTGCAGTTTCAGCTGCTAAATTATCAA 3413953 Query 77457 ATTCTATAGTAGTAACTCCGTTATATA 77483 | | ||||| ||||| ||||| Sbjct 3413952 GTATAACTGTAGTTACTCCAGAATATA 3413926 >seq3783 Length=2569584 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 77340 TAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTG 77399 |||| | || ||||| |||||||||||||| |||| || |||||||| |||| ||| Sbjct 868875 TAAAAACTTCCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGGTTG 868934 Query 77400 CATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATT 77459 |||| || |||||||| | | || ||||| |||| || |||| | ||||||||| Sbjct 868935 CATAATCTGGATGTTGATTGATCATAGTCGCTGCAGTTTCAGCTGCTAGATTATCTAATT 868994 Query 77460 CTATAGTAGTAACTCC 77475 | | || || ||||| Sbjct 868995 CGGTTGTTGTTACTCC 869010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712893201303360