Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31]
4,623 sequences; 267,973,152 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq4212 102 1e-16
seq3783 87.8 3e-12
>seq4212
Length=4365329
Score = 102 bits (112), Expect = 1e-16
Identities = 189/275 (69%), Gaps = 2/275 (1%)
Strand=Plus/Minus
Query 76965 GAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCAT 77024
|||| | || ||||| || || | | ||| | |||||||| | || || || ||||
Sbjct 3414560 GAAATTACCTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGAGTCGGTGAAGCAT 3414501
Query 77025 GAGTGAACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCAT 77083
| || || || ||| || || || ||| |||||||| || ||| || || || |
Sbjct 3414500 GTGTAAAATATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTGTCAATGTCATTT 3414442
Query 77084 TGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTA 77143
| |||||| || | ||| || | |||||||||||| ||||| | || || |||||
Sbjct 3414441 TCATGAATACCAATAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCG 3414382
Query 77144 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 77203
|| ||||| | || ||| | | || | ||||||||||||| ||| || || |||
Sbjct 3414381 TTGATTTTTAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAG 3414322
Query 77204 TCTCTTTCGTAAATAATAACCGAATTTAGTTTGTC 77238
|| | ||||| || ||| | |||| ||||| ||
Sbjct 3414321 TCACGATCGTATATTATAGCAGAATCCAGTTTCTC 3414287
Score = 96.9 bits (106), Expect = 5e-15
Identities = 124/169 (73%), Gaps = 8/169 (5%)
Strand=Plus/Minus
Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017
||||||||||||||| || | | | |||||| ||||||||| || ||||| ||||| ||
Sbjct 3415921 ATATGTTTCGTAAGTGCCCTTTTCTGCAGCTAATTCGCAACTAGCTTCTAAGGCACCATA 3415862
Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077
||||| |||||||| || || | || || |||| ||| || || || || |||||
Sbjct 3415861 ATAAAGCGTTTCGAAGATTTTAATGTTGAGTTCTTTCGCCTCTTTGCTTTCGAAGGGATA 3415802
Query 76078 ----ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACC 76122
|| ||| || || ||||||||||| || || | ||| |||||
Sbjct 3415801 TCTCAT-TAACAG---GAACGCATCTGCTAGCCCTTGTATTCCTATACC 3415757
Score = 96.9 bits (106), Expect = 5e-15
Identities = 125/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715
|||| || || ||| ||| || | ||| | ||||| ||| || | ||| |||||
Sbjct 3416298 TTCTGCATATCCGCATCCCATAAATCTCTGGAGATTAAATCTCGCAGTAAATGCGGATTG 3416239
Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775
||||| ||||||||| |||||||| | | || ||||| || |||||||||||
Sbjct 3416238 ACAATGATAAATTCTCCCGACAATACACGCCTCACATAGATATTGCTTGTATATGGTTCA 3416179
Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGC 75828
| |||||| || || || ||||| || || || || || || |||||||||||
Sbjct 3416178 ATAGATTCGTTATTCCCTAAAATCTGTGCTGTCGAGGCCGTTGGCATAGGTGC 3416126
Score = 91.5 bits (100), Expect = 2e-13
Identities = 107/142 (75%), Gaps = 6/142 (4%)
Strand=Plus/Minus
Query 76508 GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA 76567
||||| || || ||||||||| |||||||||||| | || || ||| |||||| |||
Sbjct 3415198 GTATACAATTCTTTAAATTCATCACCCCAAACATCAGCTAAGCCGGGAGATTCATATGGA 3415139
Query 76568 CACATCAATGACCACTCACCATCTTCCTTA---ACCCGTTTCATAAAGAGATCAGGTATC 76624
||||| || |||| | | || || ||| || |||| |||||| ||||| ||||||
Sbjct 3415138 CACATTAAGCTCCAC--ATC-TCGTCATTATATACACGTTCCATAAAAAGATCTGGTATC 3415082
Query 76625 CATAGAGCAATAAATAGATCTC 76646
|||||| || ||||| ||||
Sbjct 3415081 CATAGACCATAAAATAAGTCTC 3415060
Score = 89.7 bits (98), Expect = 7e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 77337 CGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAA 77396
||||||| ||| || |||||||||||||| || || ||| | ||||| |||||||| |
Sbjct 3414072 CGCTAAAACTTTTCTTGGTTTCCTTGTGTAGGTTAGACACGTCAATTCTTGCAGCTAGTA 3414013
Query 77397 TTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTA 77456
| ||||| |||||||||| || | || ||||| |||| || |||||| |||| |
Sbjct 3414012 TAGCATAATCAGGATGTTTAGTTGCCATTGTAGCTGCAGTTTCAGCTGCTAAATTATCAA 3413953
Query 77457 ATTCTATAGTAGTAACTCCGTTATATA 77483
| | ||||| ||||| |||||
Sbjct 3413952 GTATAACTGTAGTTACTCCAGAATATA 3413926
>seq3783
Length=2569584
Score = 87.8 bits (96), Expect = 3e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 77340 TAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTG 77399
|||| | || ||||| |||||||||||||| |||| || |||||||| |||| |||
Sbjct 868875 TAAAAACTTCCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGGTTG 868934
Query 77400 CATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATT 77459
|||| || |||||||| | | || ||||| |||| || |||| | |||||||||
Sbjct 868935 CATAATCTGGATGTTGATTGATCATAGTCGCTGCAGTTTCAGCTGCTAGATTATCTAATT 868994
Query 77460 CTATAGTAGTAACTCC 77475
| | || || |||||
Sbjct 868995 CGGTTGTTGTTACTCC 869010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712893201303360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |