Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq5 259 5e-64
>seq5
Length=15459558
Score = 259 bits (286), Expect = 5e-64
Identities = 579/862 (67%), Gaps = 17/862 (2%)
Strand=Plus/Minus
Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753
|| || || || || || ||||| || || ||| || ||||||||| || |||||
Sbjct 2625039 TTCTCAAAGAAATTCGTCTTGCCTTCGTTGGAAATAATCGTCATGAAATCGAACGGATTC 2624980
Query 16754 -GT-AGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATT 16811
|| || || | || || | | |||||| ||| | | ||||| || || |||||||
Sbjct 2624979 TGTGAGTTGTAGATTTTCTCGC--ACCCCAACTCGCCCAACAATCTGTCGGCCACAAATT 2624922
Query 16812 CTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCG 16871
| || ||||||||||| || ||||||||||||| || | | || || | |||||| |
Sbjct 2624921 CGATGTATTGGCACATCAAAGCGCAGTTCATTCCAATCATGCTGACTGGTAAAGCTTCAG 2624862
Query 16872 TCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGG 16931
|||| ||| | ||| || ||||| || | ||||| || || ||||| | ||
Sbjct 2624861 TCAAGAATTCCTTCTCGATTTTGACCGCGTCTTGGATAATGCTTTGAATCCGTTCTTTGG 2624802
Query 16932 ACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGT 16991
|||| | || | || ||||||| ||| || ||||||||||||| |||||||
Sbjct 2624801 ACGGCTTCTGCACCAAGTGAGAGAACATCAAACAGGCAAAATCGCAATGTAGGCCCTCGT 2624742
Query 16992 CTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCT--TTCCTCGTTTCTTTAA 17049
| || || ||||| || |||||||| | || ||||| |||| | ||| | |
Sbjct 2624741 CCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGGCATAAGATTCCGCTTTT--TAAG 2624684
Query 17050 CCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGAT 17109
||| || |||| || || ||||| ||||| || || ||||||| |||||||| |
Sbjct 2624683 CCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAATCCCTTCGACGGCGGCAAACGCCAC 2624624
Query 17110 TAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCA---CCCACTCGGC 17166
| ||||||| | | ||||||| ||| | ||||| | ||| |||| |||||
Sbjct 2624623 GATTCGTTCGCCAAAAGTCGCGTTCTTGCTGTTTATCCA---CAGCAAGGCCCAGTCGGC 2624567
Query 17167 TTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAG 17226
|| | ||| | || || ||| || || || || || || ||| || ||||| |
Sbjct 2624566 CTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGAACAAGAACTCCTTCTCCTGGGG 2624507
Query 17227 GTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGC 17286
|| || ||||| ||||| | | ||||||||| || || || ||||| || || ||
Sbjct 2624506 CTCAGAAATGTACGTTTCGATCAACATGCTGTACATCTCCGAATGGATGTTTTCAATAGC 2624447
Query 17287 TATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTC 17346
|| || || ||||||||||| || ||||| | | ||| || ||| | ||| | ||
Sbjct 2624446 GATTTGGAACCCGTAAAAGCAGCGAGCTTCGGTCACTTGCACCTCCTGGCTGAACCTCTC 2624387
Query 17347 CGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAAT 17406
| || |||||||| ||||| ||||| || |||||||| || | | ||| |||
Sbjct 2624386 GACGAGGTTTTCGTTGACGATTCCGTCAGAGGCTGCGAAAAATGCAAGAACGTGCGAAAT 2624327
Query 17407 GAAATATTTTTCGTCCGGTGTAAGAACG---CGCCAGTCCTTTAAATCTTTGGATATATC 17463
||| || ||| || | | || | |||||| | |||||||| || | |||
Sbjct 2624326 GAAGTAGCGTTCATCAGAATTCAGTTTGTTCTTCCAGTCGTCCAAATCTTTCGACAAATC 2624267
Query 17464 CACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATT 17523
|||||||||| |||||||| || | || | || || | | |||||| ||
Sbjct 2624266 TACTTCTTCGGTCGTCCAAAACGAGGCTTCCGCTTGCTTGTATTTGTCCCAAATGTCGGG 2624207
Query 17524 GTATTGTATGGGGAATACAACA 17545
||| || ||||| || || |||
Sbjct 2624206 GTACTGGATGGGAAAGACCACA 2624185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517532130875760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |