Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq5 259 5e-64 >seq5 Length=15459558 Score = 259 bits (286), Expect = 5e-64 Identities = 579/862 (67%), Gaps = 17/862 (2%) Strand=Plus/Minus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753 || || || || || || ||||| || || ||| || ||||||||| || ||||| Sbjct 2625039 TTCTCAAAGAAATTCGTCTTGCCTTCGTTGGAAATAATCGTCATGAAATCGAACGGATTC 2624980 Query 16754 -GT-AGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATT 16811 || || || | || || | | |||||| ||| | | ||||| || || ||||||| Sbjct 2624979 TGTGAGTTGTAGATTTTCTCGC--ACCCCAACTCGCCCAACAATCTGTCGGCCACAAATT 2624922 Query 16812 CTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCG 16871 | || ||||||||||| || ||||||||||||| || | | || || | |||||| | Sbjct 2624921 CGATGTATTGGCACATCAAAGCGCAGTTCATTCCAATCATGCTGACTGGTAAAGCTTCAG 2624862 Query 16872 TCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGG 16931 |||| ||| | ||| || ||||| || | ||||| || || ||||| | || Sbjct 2624861 TCAAGAATTCCTTCTCGATTTTGACCGCGTCTTGGATAATGCTTTGAATCCGTTCTTTGG 2624802 Query 16932 ACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGT 16991 |||| | || | || ||||||| ||| || ||||||||||||| ||||||| Sbjct 2624801 ACGGCTTCTGCACCAAGTGAGAGAACATCAAACAGGCAAAATCGCAATGTAGGCCCTCGT 2624742 Query 16992 CTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCT--TTCCTCGTTTCTTTAA 17049 | || || ||||| || |||||||| | || ||||| |||| | ||| | | Sbjct 2624741 CCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGGCATAAGATTCCGCTTTT--TAAG 2624684 Query 17050 CCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGAT 17109 ||| || |||| || || ||||| ||||| || || ||||||| |||||||| | Sbjct 2624683 CCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAATCCCTTCGACGGCGGCAAACGCCAC 2624624 Query 17110 TAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCA---CCCACTCGGC 17166 | ||||||| | | ||||||| ||| | ||||| | ||| |||| ||||| Sbjct 2624623 GATTCGTTCGCCAAAAGTCGCGTTCTTGCTGTTTATCCA---CAGCAAGGCCCAGTCGGC 2624567 Query 17167 TTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAG 17226 || | ||| | || || ||| || || || || || || ||| || ||||| | Sbjct 2624566 CTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGAACAAGAACTCCTTCTCCTGGGG 2624507 Query 17227 GTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGC 17286 || || ||||| ||||| | | ||||||||| || || || ||||| || || || Sbjct 2624506 CTCAGAAATGTACGTTTCGATCAACATGCTGTACATCTCCGAATGGATGTTTTCAATAGC 2624447 Query 17287 TATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTC 17346 || || || ||||||||||| || ||||| | | ||| || ||| | ||| | || Sbjct 2624446 GATTTGGAACCCGTAAAAGCAGCGAGCTTCGGTCACTTGCACCTCCTGGCTGAACCTCTC 2624387 Query 17347 CGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAAT 17406 | || |||||||| ||||| ||||| || |||||||| || | | ||| ||| Sbjct 2624386 GACGAGGTTTTCGTTGACGATTCCGTCAGAGGCTGCGAAAAATGCAAGAACGTGCGAAAT 2624327 Query 17407 GAAATATTTTTCGTCCGGTGTAAGAACG---CGCCAGTCCTTTAAATCTTTGGATATATC 17463 ||| || ||| || | | || | |||||| | |||||||| || | ||| Sbjct 2624326 GAAGTAGCGTTCATCAGAATTCAGTTTGTTCTTCCAGTCGTCCAAATCTTTCGACAAATC 2624267 Query 17464 CACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATT 17523 |||||||||| |||||||| || | || | || || | | |||||| || Sbjct 2624266 TACTTCTTCGGTCGTCCAAAACGAGGCTTCCGCTTGCTTGTATTTGTCCCAAATGTCGGG 2624207 Query 17524 GTATTGTATGGGGAATACAACA 17545 ||| || ||||| || || ||| Sbjct 2624206 GTACTGGATGGGAAAGACCACA 2624185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517532130875760