Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq1425 100 2e-16
seq4 100 2e-16
>seq1425
Length=145493
Score = 100 bits (110), Expect = 2e-16
Identities = 230/344 (67%), Gaps = 2/344 (1%)
Strand=Plus/Minus
Query 18788 GGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGA 18847
||||||||| || ||||| ||||| ||||||||| | || ||||| ||||| || || |
Sbjct 66781 GGGGGACCTGGGGCCCATCTACGGGTTCCAGTGGCGGCACTTTGGGGCGGAGTACAAGGG 66722
Query 18848 CTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAAT 18907
|| |||| | | || | || |||||| || ||| | || ||
Sbjct 66721 GGTCCAGGGGGACTACACGAACGAGGGGGTGGACCAGCTGGCGCGGGTCATACACACGAT 66662
Query 18908 TAAAACAAACCCAGAAAGC-CGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCC 18966
|| || || || ||| | || | || || || ||| | |||||||| || ||| | |
Sbjct 66661 TAGGACGAATCC-GAACGATCGGAGGATTATCATGTCGGCGTGGAATCCGAAAGATTTGC 66603
Query 18967 CCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAAT 19026
| ||||| || || ||||||||| | ||||||| ||| || | || ||
Sbjct 66602 ACAAAATGGCGCTGCCGCCATGTCACTGTCTGGCGCAGTTTTTCGTGGCCGAGGGCGAGC 66543
Query 19027 TATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTG 19086
| ||| | |||||||| |||||||||||||||| ||||| |||||||| || |
Sbjct 66542 TGAGCTGTTTGCTGTACCAGAGGGCGGGGGATATGGGCCTGGGGGTGCCGTTCAATATCG 66483
Query 19087 CTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGA 19130
| | ||||| |||||||| || | || |||||||| |||
Sbjct 66482 CCAGTTATGCGCTTCTTACAAGGATGATTGCACATGTTACGGGA 66439
>seq4
Length=12290766
Score = 100 bits (110), Expect = 2e-16
Identities = 174/243 (72%), Gaps = 10/243 (4%)
Strand=Plus/Plus
Query 18893 TGTTATAGATACAATTAA-AACAAACCCA--GAAAGCCGACGAATGATTATATCGTCTTG 18949
|||||| || |||||| || ||||||| || || || |||| || || | | ||
Sbjct 288390 TGTTATCGAAACAATTCGTAATAAACCCAACGATAG--GA-GAATCATAATGTGTGCGTG 288446
Query 18950 GAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTCACA-CGTTATGTCAGTTTT 19008
||||||| |||||| ||| ||||| || || || |||||| | | || |||||||
Sbjct 288447 GAATCCAGTGGATATTCCCGAAATGGCCCTCCCGCCTTGTCACTGCCTCGTG-CAGTTTT 288505
Query 19009 ACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTG 19068
|| ||||| || ||||| || || | ||||| || |||| |||||||| || |
Sbjct 288506 TTGTGGCAAATGGGGAATTGTCGTGTTTGTTGTACCAAAGGTCGGCTGATATGGGGCTGG 288565
Query 19069 GGGTACCGTTCAACATTGCTGGATATGCACTTCTT-ACCTACATAGTAGCGCATGTTACA 19127
|||| |||||||| ||||| | ||| | ||| || || || || | || |||||||||
Sbjct 288566 GGGTGCCGTTCAATATTGCAAGTTATTC-CTTGTTGACGTATATGATTGCACATGTTACA 288624
Query 19128 GGA 19130
|||
Sbjct 288625 GGA 288627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399493862835690
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |