Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq1425 100 2e-16 seq4 100 2e-16 >seq1425 Length=145493 Score = 100 bits (110), Expect = 2e-16 Identities = 230/344 (67%), Gaps = 2/344 (1%) Strand=Plus/Minus Query 18788 GGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGA 18847 ||||||||| || ||||| ||||| ||||||||| | || ||||| ||||| || || | Sbjct 66781 GGGGGACCTGGGGCCCATCTACGGGTTCCAGTGGCGGCACTTTGGGGCGGAGTACAAGGG 66722 Query 18848 CTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAAT 18907 || |||| | | || | || |||||| || ||| | || || Sbjct 66721 GGTCCAGGGGGACTACACGAACGAGGGGGTGGACCAGCTGGCGCGGGTCATACACACGAT 66662 Query 18908 TAAAACAAACCCAGAAAGC-CGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCC 18966 || || || || ||| | || | || || || ||| | |||||||| || ||| | | Sbjct 66661 TAGGACGAATCC-GAACGATCGGAGGATTATCATGTCGGCGTGGAATCCGAAAGATTTGC 66603 Query 18967 CCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAAT 19026 | ||||| || || ||||||||| | ||||||| ||| || | || || Sbjct 66602 ACAAAATGGCGCTGCCGCCATGTCACTGTCTGGCGCAGTTTTTCGTGGCCGAGGGCGAGC 66543 Query 19027 TATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTG 19086 | ||| | |||||||| |||||||||||||||| ||||| |||||||| || | Sbjct 66542 TGAGCTGTTTGCTGTACCAGAGGGCGGGGGATATGGGCCTGGGGGTGCCGTTCAATATCG 66483 Query 19087 CTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGA 19130 | | ||||| |||||||| || | || |||||||| ||| Sbjct 66482 CCAGTTATGCGCTTCTTACAAGGATGATTGCACATGTTACGGGA 66439 >seq4 Length=12290766 Score = 100 bits (110), Expect = 2e-16 Identities = 174/243 (72%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 18893 TGTTATAGATACAATTAA-AACAAACCCA--GAAAGCCGACGAATGATTATATCGTCTTG 18949 |||||| || |||||| || ||||||| || || || |||| || || | | || Sbjct 288390 TGTTATCGAAACAATTCGTAATAAACCCAACGATAG--GA-GAATCATAATGTGTGCGTG 288446 Query 18950 GAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTCACA-CGTTATGTCAGTTTT 19008 ||||||| |||||| ||| ||||| || || || |||||| | | || ||||||| Sbjct 288447 GAATCCAGTGGATATTCCCGAAATGGCCCTCCCGCCTTGTCACTGCCTCGTG-CAGTTTT 288505 Query 19009 ACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTG 19068 || ||||| || ||||| || || | ||||| || |||| |||||||| || | Sbjct 288506 TTGTGGCAAATGGGGAATTGTCGTGTTTGTTGTACCAAAGGTCGGCTGATATGGGGCTGG 288565 Query 19069 GGGTACCGTTCAACATTGCTGGATATGCACTTCTT-ACCTACATAGTAGCGCATGTTACA 19127 |||| |||||||| ||||| | ||| | ||| || || || || | || ||||||||| Sbjct 288566 GGGTGCCGTTCAATATTGCAAGTTATTC-CTTGTTGACGTATATGATTGCACATGTTACA 288624 Query 19128 GGA 19130 ||| Sbjct 288625 GGA 288627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399493862835690