Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq4 111 1e-19
>seq4
Length=12290766
Score = 111 bits (122), Expect = 1e-19
Identities = 346/525 (66%), Gaps = 8/525 (2%)
Strand=Plus/Minus
Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812
|| ||||| |||||||| | || || | ||||| || ||||| || || ||||| ||
Sbjct 288623 GTAACATGTGCAATCATATACGTCAACAAGGAATAACTTGCAATATTGAACGGCACCCCC 288564
Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAA 101872
| |||||||||||| || ||||| |||| ||| || | | |||| ||| ||
Sbjct 288563 AGCCCCATATCAGCCGACCTTTGGTACAACAAACACGACAATTCCCCATTTGCCACAAAA 288504
Query 101873 AATTGACTTAATACA-TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCA 101931
|| || | | || ||||||||||| | |||||| ||||| || ||||||
Sbjct 288503 AACTG-CACGAGGCAGTGACAAGGCGGGAGGGCCATTTCGGGAATATCCACTGGATTCCA 288445
Query 101932 AGCACACATTAACATCCTTCTATCTGTAGGGTTTGTT-TTTATAGTATCAATCAACTGTT 101990
|||||||||| || || ||||| || |||||| || || || || || | ||
Sbjct 288444 CGCACACATTATGATTCTCCTATC-GTTGGGTTTATTACGAATTGTTTCGATAACATGAG 288386
Query 101991 TTAATTGGTCAACTCCTTCTCCTTTATAATCGC-GCCCAACACCTTTATATTCTGCTCCG 102049
|||||||||| |||| ||||| | | || | || || || || || ||
Sbjct 288385 CCAATTGGTCAATCCCTTGATTGGCGTAATCCCAGTGCATC-CCCTTGTACTCGGCCCCA 288327
Query 102050 AAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAA 102109
|| || | |||||| || ||||| || ||||| ||||| || || || | |||| |
Sbjct 288326 AAGTGGCGCCACTGGAAACCATAAACCGGTCCCAGATCGCCCTCCTCGCGCTCATTGAGC 288267
Query 102110 CCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCT 102169
|| | ||| | ||| || | | |||||||||||||| ||||| ||
Sbjct 288266 CCCACAGAATCGAGAAACTCTCGTGTGCTGTTCGCATCCCAAATATGCACATTTTTCTCT 288207
Query 102170 GATAGCTC-TTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACC 102228
|| || ||||| || || || ||| |||| ||||| | || || ||||| || ||
Sbjct 288206 TTTAATTCGTTTGC-GTTCGTTGAGCCTTTGATGAACCAAAGCAACTCCTCAACGACTCC 288148
Query 102229 TCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAATTCATTTTC 102273
| ||| || || | || || || || || || || |||| ||
Sbjct 288147 GCGCCAGAACACACGTTTCGTGGTCAACAGAGGGAAGACATTGTC 288103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361242033476582
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |