Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq4 111 1e-19 >seq4 Length=12290766 Score = 111 bits (122), Expect = 1e-19 Identities = 346/525 (66%), Gaps = 8/525 (2%) Strand=Plus/Minus Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812 || ||||| |||||||| | || || | ||||| || ||||| || || ||||| || Sbjct 288623 GTAACATGTGCAATCATATACGTCAACAAGGAATAACTTGCAATATTGAACGGCACCCCC 288564 Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAA 101872 | |||||||||||| || ||||| |||| ||| || | | |||| ||| || Sbjct 288563 AGCCCCATATCAGCCGACCTTTGGTACAACAAACACGACAATTCCCCATTTGCCACAAAA 288504 Query 101873 AATTGACTTAATACA-TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCA 101931 || || | | || ||||||||||| | |||||| ||||| || |||||| Sbjct 288503 AACTG-CACGAGGCAGTGACAAGGCGGGAGGGCCATTTCGGGAATATCCACTGGATTCCA 288445 Query 101932 AGCACACATTAACATCCTTCTATCTGTAGGGTTTGTT-TTTATAGTATCAATCAACTGTT 101990 |||||||||| || || ||||| || |||||| || || || || || | || Sbjct 288444 CGCACACATTATGATTCTCCTATC-GTTGGGTTTATTACGAATTGTTTCGATAACATGAG 288386 Query 101991 TTAATTGGTCAACTCCTTCTCCTTTATAATCGC-GCCCAACACCTTTATATTCTGCTCCG 102049 |||||||||| |||| ||||| | | || | || || || || || || Sbjct 288385 CCAATTGGTCAATCCCTTGATTGGCGTAATCCCAGTGCATC-CCCTTGTACTCGGCCCCA 288327 Query 102050 AAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAA 102109 || || | |||||| || ||||| || ||||| ||||| || || || | |||| | Sbjct 288326 AAGTGGCGCCACTGGAAACCATAAACCGGTCCCAGATCGCCCTCCTCGCGCTCATTGAGC 288267 Query 102110 CCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCT 102169 || | ||| | ||| || | | |||||||||||||| ||||| || Sbjct 288266 CCCACAGAATCGAGAAACTCTCGTGTGCTGTTCGCATCCCAAATATGCACATTTTTCTCT 288207 Query 102170 GATAGCTC-TTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACC 102228 || || ||||| || || || ||| |||| ||||| | || || ||||| || || Sbjct 288206 TTTAATTCGTTTGC-GTTCGTTGAGCCTTTGATGAACCAAAGCAACTCCTCAACGACTCC 288148 Query 102229 TCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAATTCATTTTC 102273 | ||| || || | || || || || || || || |||| || Sbjct 288147 GCGCCAGAACACACGTTTCGTGGTCAACAGAGGGAAGACATTGTC 288103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361242033476582