Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4 333 3e-86 seq5 264 1e-65 >seq4 Length=12290766 Score = 333 bits (368), Expect = 3e-86 Identities = 1218/1901 (64%), Gaps = 51/1901 (3%) Strand=Plus/Minus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 || |||| |||||||||||||||| | || |||||||| | || ||||||||| || Sbjct 1759639 TTATCCACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAATAGTACATCCCT 1759580 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGA----ATAACT 52914 || |||| ||| | ||| ||||| |||||||| | || || |||| | Sbjct 1759579 GTCTTTAAACCCTTATCCCACCCGTAGAAATGCAT----GGAAGACATGACCCCATAATT 1759524 Query 52915 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 52974 ||| | || ||||| |||||||| || ||||| || || || || || || || || || Sbjct 1759523 CGGGGCCGCAATATGAATATTCATCGACTGACTCTGGTCAATAAACGCGCCTCTATCAGC 1759464 Query 52975 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 53034 ||||| | || || || || | ||| ||||| | |||||||| | | | || | Sbjct 1759463 CGCCATATCAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTTGTTTCAA 1759404 Query 53035 ATCTTCTGGAA-----GGTTTGTATTCTGAATAGATCCACCATCTACCATAATCCTATTC 53089 ||| || |||| || ||| || |||| || ||| || | |||||| |||| Sbjct 1759403 ATCGTCGGGAATCCCCGGAATGTTTT--GAATCGAACCATAATTCGCAATAATCTGATTC 1759346 Query 53090 TTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 53149 || ||| ||| | ||| | ||||| || ||| | | || || ||| |||| || Sbjct 1759345 TTCATCGTATCGTCCCAAAGCCCCCTCTCAGTCAAATCCTTCAGCAGGTGCTGATTCACG 1759286 Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 |||||||| || |||||||| || | || || |||||| || |||||||| Sbjct 1759285 ACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTACGGTTCGGTC 1759226 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 || |||||||| ||||||||||| ||||| || || || ||||| || |||| | || Sbjct 1759225 GATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAAAAGTAGC 1759166 Query 53270 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 53329 ||| | || ||||||| | |||||| | ||| | | ||||| ||| | || Sbjct 1759165 GAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCCACAAATTT 1759106 Query 53330 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 53389 | || || || | | ||| | |||| | || ||| || Sbjct 1759105 GTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGGTGACCCTTCA 1759046 Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449 || || || || || || | ||| || || ||||| ||||| ||||| || || |||||| Sbjct 1759045 TAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGGCGCCGTAA 1758986 Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509 |||| |||||||| || | | ||||| ||| || ||| |||||||||| || | Sbjct 1758985 TAAAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGGGCTATCAAAAGG--CA 1758928 Query 53510 TT--TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 || | |||||| ||||| || || | || ||||| ||||| || | || || || | Sbjct 1758927 TTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGGCCTGTGGC 1758868 Query 53568 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 53627 | ||| || | || ||||| | |||||| ||||| | ||| || | ||| || | Sbjct 1758867 GCAGATTCGACTTACGCGCCTCTGGCAAAGGATAGTAATTCAGATCAATGACTTTGTTCA 1758808 Query 53628 GGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-------TTGT 53680 || | | | |||||| | ||||||| ||| ||| || | ||| Sbjct 1758807 AATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTTAAAGTCGTAGCCGCTCCTGT 1758748 Query 53681 CCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTA 53740 || || | || |||||||| | || || || |||| ||||| ||||| | || | Sbjct 1758747 CC-GCTTTCACGAACATGTTTACGGCGATTGAGGCCAAGTTACAGACGGCGATTTCGTCG 1758689 Query 53741 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 53800 | | | | | | ||| || ||||| | ||| || | | |||| || ||||||||| Sbjct 1758688 GGTGATGTAAACTCGACTATTTCCGTGCATAAATTGCTGCTCCTGATAGTGCCTAAATTT 1758629 Query 53801 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCA 53860 ||||| || || || ||||||| || || || || || ||| | || || ||||| || Sbjct 1758628 TGTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATGTAAGGGGTGCCAGTCTCC 1758569 Query 53861 ATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGC-CTTTATTATAGATTTGTATCT 53919 | |||||| | ||| || ||| ||| | || || | | | | | || | Sbjct 1758568 ACCTGGGAGACGCAAATAGCGCGCCAAACGTCCCGCGCTGGTAACTGTCTA-ACATAGCG 1758510 Query 53920 CTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAA 53979 || | |||||| | |||||| ||| ||||| || |||||| || | | | Sbjct 1758509 ACCGTCAGTCTCGTATTTTTCGTACAATTTTTCGAACTCTTCGCCCCAACAATCGGCAAG 1758450 Query 53980 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 54039 || || | | | |||||||||| ||||| | |||| | ||||| || ||| Sbjct 1758449 GCCTGGTGACTGGTGTGGACACATCAGGGACCATTTCTCGTCGTTTTTCACCCGGCGCAT 1758390 Query 54040 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 54099 || | ||||| |||| | ||| | || | || | | || | | ||| || || Sbjct 1758389 GAACAAGTCAGGCGTCCACAAAGCGAAGAACAAGTCGCGTGCCCTTAGCTGCTCCTTCCC 1758330 Query 54100 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 54159 || || || || | | | || ||| |||||| | |||||| || || | ||| || Sbjct 1758329 CGTGTTTTTCTTCAAGTTTAAAAAATCCAAAATATCGGCATGCCAAGGCTCGAGGTAAAT 1758270 Query 54160 GGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 54219 | | | || || | |||||| || || || || | ||| | |||| ||| ||| | Sbjct 1758269 AGCGCAAGCCCCCGGTCTTTTGTTCCCCCCTTGGTCCACGTAGCGCGCGGAGTTGTTAAA 1758210 Query 54220 AACTCTCAACATTGGAATAATAC---------CATTGGATGCACC------ATTGGTCCC 54264 ||| | ||| | || | ||| | | |||| | || | |||||| Sbjct 1758209 AACGCGCAAAACGGGCACAATCCCGTCTGAGACTTTGGGGGTGCCGGCCAAAGTGGTCCG 1758150 Query 54265 GGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCAT 54324 || | | | || |||| || | || ||| | |||| || |||||| | Sbjct 1758149 AAAGGT---GGTGCCTTTGGCCCGTAAGTTGTGAATACTGACGCCTAGACCGCCTGCCGT 1758093 Query 54325 TTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCAT 54384 ||| || || | || ||| | | || | |||||||| | | | || || Sbjct 1758092 TTTGGAAATCATGGCACATTGGGTCAAACAGCGCGAAATGCCCTCGAGATTGTCCTCGGG 1758033 Query 54385 CA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGG 54443 | |||| | ||||| ||| || | |||| | ||| | || || | | Sbjct 1758032 GAGAGTTACG-AGAAAGCAGGAGGAGAGTTGGGGTTTGGGTGTTGCAGCTGAGAAGAGTG 1757974 Query 54444 TAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAG 54502 ||||| ||||| || || ||||||| || | |||| ||||| || ||||| |||||| Sbjct 1757973 TAGGACTGGCGTGTGTGAAGTATTTTTCTGACATGTAG-TTGTAAGTTTCGATGGCTGAG 1757915 Query 54503 TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 54562 || || || | || || || || ||||| ||||||| |||||| || || | ||| Sbjct 1757914 TCGATGTCTGAGCCGTGGATGCCGACAGCGACGCGCATTAGCATGTGTTGGGGGCGCTCA 1757855 Query 54563 ACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 54622 ||||| ||| ||| ||||| ||||||||||| || | ||||| ||||| || || Sbjct 1757854 ACGATTTTGCCGTTGATTTTAAGCAAGTAGGAACGCTCGAGGGTTTTGAAACCGAAGTAA 1757795 Query 54623 TTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 ||||| || || || || ||||| || || |||||||| Sbjct 1757794 TTGTAAGAGAAATCGCGATCGTAGATTATGCAAGAGTTGAG 1757754 Score = 93.3 bits (102), Expect = 5e-14 Identities = 327/508 (64%), Gaps = 6/508 (1%) Strand=Plus/Minus Query 53398 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGT 53457 ||| || || || | || || | ||| |||| || || || || | ||||| | || Sbjct 1762454 GTACGGCCCATCTCTTTCGGCAATTTCGGAACTTGCTTCCAAGGCGGCATAATACAAAGT 1762395 Query 53458 TTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 53517 |||||| || | | ||| || | || ||| |||| ||||| || | | ||| Sbjct 1762394 TTCGAAAATTTGCACATTGAGTGAACGAGCCTCCGGGCTCTCAAACGGCATACGCAGGAG 1762335 Query 53518 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 53577 ||| || | || || || ||||| || || || ||||| |||| |||||| ||| || Sbjct 1762334 AATGAAAGTATCGGCCAAACCTTGCACCCCTATTCCGATCGGTCGGTGTCTCAAATTCGA 1762275 Query 53578 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGAC 53637 || ||| || || | || || | | | ||||| || ||||| ||| || Sbjct 1762274 CGTTCGAGCCTCAGGGCTCGGGTACGCACTTACGTCTATCGCCTTGTTGAGATTTTTGGT 1762215 Query 53638 AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATTGTCCATCT----ATT-AC 53691 | |||||||| | |||| || ||||| || || | | ||| || Sbjct 1762214 TAAGGTCTTGACCACTTGTTTCAACTTTTCGAAATCGTAACCGTTCCGTTCCGGATTCAC 1762155 Query 53692 AAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATA 53751 |||||||| | ||||| || ||| | ||||| |||| | || | || | || Sbjct 1762154 GAACATGTTTAGTGCAACTGAGGCCGTAATACAAGCGGCAATTTCGTCAGAAGAGCTGTA 1762095 Query 53752 TTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 53811 ||| ||| || |||| | | | |||| ||||| || ||||||||||| || || || Sbjct 1762094 TTGAATTGATTCGGTGCTCAAACTGCTACTTTTGATCGTCCCTAAATTTTGCTGGTTGCT 1762035 Query 53812 CTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTC 53871 ||||| || || |||||||| || | ||| | |||| || ||||| ||||| || | Sbjct 1762034 TTTTTTATTGCAAGCATCCTTGTACAAAATATAGGGCGAGCCTGTTTCCATCTGTGAGAC 1761975 Query 53872 TATAATCGCTTTCCAGACGACACGAGCC 53899 ||||| ||||||| | || ||| Sbjct 1761974 GCAGATCGCGCGCCAGACGTCCCGTGCC 1761947 >seq5 Length=15459558 Score = 264 bits (292), Expect = 1e-65 Identities = 626/939 (67%), Gaps = 14/939 (1%) Strand=Plus/Minus Query 23787 CTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAGACATAACTCCCATTTTT 23846 ||||||||||| | ||||| | | | | | || | | || | ||||| | || Sbjct 2625117 CTTTAAAAGTCCAAATCTAGATGGTACTCCTCGGTTTGCTCACACGTGACTCCGCTCTTC 2625058 Query 23847 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCC 23906 |||||||| ||||| || || || ||||| || || ||||| || ||| | | Sbjct 2625057 TGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTGGAAATAATCGTC 2624998 Query 23907 ATGAAATCGGATGGATTG-GTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCAA 23965 ||||||||| | ||||| || | || |||||| | | | ||||| || | ||| Sbjct 2624997 ATGAAATCGAACGGATTCTGTGAG-TTGTAGATTTTCTCGCACCCCAACTCGCCCAACAA 2624939 Query 23966 TCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 24025 ||| || || ||||| || || ||| ||||| | || |||||||| || | | Sbjct 2624938 TCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATTCCAATCATGCT 2624879 Query 24026 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 24085 ||||| | ||| |||| | ||||| | || || |||||||||| ||||| | Sbjct 2624878 GACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCTTGGATAAT-GC 2624820 Query 24086 TCTTACTGT-TTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 24144 | | | | ||||| ||| | || || || ||||||||||| || |||| Sbjct 2624819 TTTGAATCCGTTCTTTGGACGGCTTCTGCACCAAGTGAGAGAACATCAAACAGGCAAAAT 2624760 Query 24145 CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 24204 |||| ||||| |||||||| || ||| | ||| |||||||| ||||| || ||||| | Sbjct 2624759 CGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGGCATAA 2624700 Query 24205 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTA 24264 | |||||||||||||| || || || ||||| ||||| |||||||| ||||| | Sbjct 2624699 GATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAATCCCTTCGA 2624640 Query 24265 CTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATG-----TATCCACTT 24319 | || ||||| || | | || ||| ||| || | ||| || || ||||||| Sbjct 2624639 CGGCGGCAAACGCCACGATTCGTTCGCCAAAA--GTCGCGTTCTTGCTGTTTATCCACAG 2624582 Query 24320 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 24379 ||||| ||||||||||| || ||||| |||| ||||| || ||||| || | | Sbjct 2624581 CAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGAACAAGAA 2624522 Query 24380 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 24439 | || || | || || || || || ||||| | || ||||| |||||||| Sbjct 2624521 CTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTGTACATCTCCGAATG 2624462 Query 24440 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 24499 ||||||||||| || ||||| || ||||| || || | ||| ||||| | || || || Sbjct 2624461 GATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCGGTCACTTGCACCTC 2624402 Query 24500 TATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 24559 | || | || | | ||||| || || ||||||||| |||||| ||||| || Sbjct 2624401 CTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAGGCTGCGAAAAATGC 2624342 Query 24560 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCCAATCATTGAT 24616 | || || || || || ||| || | | ||| || ||||| || | | Sbjct 2624341 AAGAACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTTGTTCTTCCAGTCGTCCAA 2624282 Query 24617 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 24676 |||||| || | ||| |||||||| |||||||| || || || || | || || | Sbjct 2624281 ATCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTCCGCTTGCTTGTATTT 2624222 Query 24677 ATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 | ||| ||||| | || || || ||||| | ||||| Sbjct 2624221 GTCCCAAATGTCGGGGTACTGGATGGGAAAGACCACAAA 2624183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593706148395360