Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq4 333 3e-86
seq5 264 1e-65
>seq4
Length=12290766
Score = 333 bits (368), Expect = 3e-86
Identities = 1218/1901 (64%), Gaps = 51/1901 (3%)
Strand=Plus/Minus
Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858
|| |||| |||||||||||||||| | || |||||||| | || ||||||||| ||
Sbjct 1759639 TTATCCACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAATAGTACATCCCT 1759580
Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGA----ATAACT 52914
|| |||| ||| | ||| ||||| |||||||| | || || |||| |
Sbjct 1759579 GTCTTTAAACCCTTATCCCACCCGTAGAAATGCAT----GGAAGACATGACCCCATAATT 1759524
Query 52915 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 52974
||| | || ||||| |||||||| || ||||| || || || || || || || || ||
Sbjct 1759523 CGGGGCCGCAATATGAATATTCATCGACTGACTCTGGTCAATAAACGCGCCTCTATCAGC 1759464
Query 52975 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 53034
||||| | || || || || | ||| ||||| | |||||||| | | | || |
Sbjct 1759463 CGCCATATCAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTTGTTTCAA 1759404
Query 53035 ATCTTCTGGAA-----GGTTTGTATTCTGAATAGATCCACCATCTACCATAATCCTATTC 53089
||| || |||| || ||| || |||| || ||| || | |||||| ||||
Sbjct 1759403 ATCGTCGGGAATCCCCGGAATGTTTT--GAATCGAACCATAATTCGCAATAATCTGATTC 1759346
Query 53090 TTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 53149
|| ||| ||| | ||| | ||||| || ||| | | || || ||| |||| ||
Sbjct 1759345 TTCATCGTATCGTCCCAAAGCCCCCTCTCAGTCAAATCCTTCAGCAGGTGCTGATTCACG 1759286
Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209
|||||||| || |||||||| || | || || |||||| || ||||||||
Sbjct 1759285 ACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTACGGTTCGGTC 1759226
Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269
|| |||||||| ||||||||||| ||||| || || || ||||| || |||| | ||
Sbjct 1759225 GATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAAAAGTAGC 1759166
Query 53270 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 53329
||| | || ||||||| | |||||| | ||| | | ||||| ||| | ||
Sbjct 1759165 GAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCCACAAATTT 1759106
Query 53330 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 53389
| || || || | | ||| | |||| | || ||| ||
Sbjct 1759105 GTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGGTGACCCTTCA 1759046
Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449
|| || || || || || | ||| || || ||||| ||||| ||||| || || ||||||
Sbjct 1759045 TAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGGCGCCGTAA 1758986
Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509
|||| |||||||| || | | ||||| ||| || ||| |||||||||| || |
Sbjct 1758985 TAAAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGGGCTATCAAAAGG--CA 1758928
Query 53510 TT--TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567
|| | |||||| ||||| || || | || ||||| ||||| || | || || || |
Sbjct 1758927 TTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGGCCTGTGGC 1758868
Query 53568 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 53627
| ||| || | || ||||| | |||||| ||||| | ||| || | ||| || |
Sbjct 1758867 GCAGATTCGACTTACGCGCCTCTGGCAAAGGATAGTAATTCAGATCAATGACTTTGTTCA 1758808
Query 53628 GGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-------TTGT 53680
|| | | | |||||| | ||||||| ||| ||| || | |||
Sbjct 1758807 AATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTTAAAGTCGTAGCCGCTCCTGT 1758748
Query 53681 CCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTA 53740
|| || | || |||||||| | || || || |||| ||||| ||||| | || |
Sbjct 1758747 CC-GCTTTCACGAACATGTTTACGGCGATTGAGGCCAAGTTACAGACGGCGATTTCGTCG 1758689
Query 53741 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 53800
| | | | | | ||| || ||||| | ||| || | | |||| || |||||||||
Sbjct 1758688 GGTGATGTAAACTCGACTATTTCCGTGCATAAATTGCTGCTCCTGATAGTGCCTAAATTT 1758629
Query 53801 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCA 53860
||||| || || || ||||||| || || || || || ||| | || || ||||| ||
Sbjct 1758628 TGTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATGTAAGGGGTGCCAGTCTCC 1758569
Query 53861 ATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGC-CTTTATTATAGATTTGTATCT 53919
| |||||| | ||| || ||| ||| | || || | | | | | || |
Sbjct 1758568 ACCTGGGAGACGCAAATAGCGCGCCAAACGTCCCGCGCTGGTAACTGTCTA-ACATAGCG 1758510
Query 53920 CTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAA 53979
|| | |||||| | |||||| ||| ||||| || |||||| || | | |
Sbjct 1758509 ACCGTCAGTCTCGTATTTTTCGTACAATTTTTCGAACTCTTCGCCCCAACAATCGGCAAG 1758450
Query 53980 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 54039
|| || | | | |||||||||| ||||| | |||| | ||||| || |||
Sbjct 1758449 GCCTGGTGACTGGTGTGGACACATCAGGGACCATTTCTCGTCGTTTTTCACCCGGCGCAT 1758390
Query 54040 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 54099
|| | ||||| |||| | ||| | || | || | | || | | ||| || ||
Sbjct 1758389 GAACAAGTCAGGCGTCCACAAAGCGAAGAACAAGTCGCGTGCCCTTAGCTGCTCCTTCCC 1758330
Query 54100 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 54159
|| || || || | | | || ||| |||||| | |||||| || || | ||| ||
Sbjct 1758329 CGTGTTTTTCTTCAAGTTTAAAAAATCCAAAATATCGGCATGCCAAGGCTCGAGGTAAAT 1758270
Query 54160 GGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 54219
| | | || || | |||||| || || || || | ||| | |||| ||| ||| |
Sbjct 1758269 AGCGCAAGCCCCCGGTCTTTTGTTCCCCCCTTGGTCCACGTAGCGCGCGGAGTTGTTAAA 1758210
Query 54220 AACTCTCAACATTGGAATAATAC---------CATTGGATGCACC------ATTGGTCCC 54264
||| | ||| | || | ||| | | |||| | || | ||||||
Sbjct 1758209 AACGCGCAAAACGGGCACAATCCCGTCTGAGACTTTGGGGGTGCCGGCCAAAGTGGTCCG 1758150
Query 54265 GGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCAT 54324
|| | | | || |||| || | || ||| | |||| || |||||| |
Sbjct 1758149 AAAGGT---GGTGCCTTTGGCCCGTAAGTTGTGAATACTGACGCCTAGACCGCCTGCCGT 1758093
Query 54325 TTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCAT 54384
||| || || | || ||| | | || | |||||||| | | | || ||
Sbjct 1758092 TTTGGAAATCATGGCACATTGGGTCAAACAGCGCGAAATGCCCTCGAGATTGTCCTCGGG 1758033
Query 54385 CA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGG 54443
| |||| | ||||| ||| || | |||| | ||| | || || | |
Sbjct 1758032 GAGAGTTACG-AGAAAGCAGGAGGAGAGTTGGGGTTTGGGTGTTGCAGCTGAGAAGAGTG 1757974
Query 54444 TAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAG 54502
||||| ||||| || || ||||||| || | |||| ||||| || ||||| ||||||
Sbjct 1757973 TAGGACTGGCGTGTGTGAAGTATTTTTCTGACATGTAG-TTGTAAGTTTCGATGGCTGAG 1757915
Query 54503 TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 54562
|| || || | || || || || ||||| ||||||| |||||| || || | |||
Sbjct 1757914 TCGATGTCTGAGCCGTGGATGCCGACAGCGACGCGCATTAGCATGTGTTGGGGGCGCTCA 1757855
Query 54563 ACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 54622
||||| ||| ||| ||||| ||||||||||| || | ||||| ||||| || ||
Sbjct 1757854 ACGATTTTGCCGTTGATTTTAAGCAAGTAGGAACGCTCGAGGGTTTTGAAACCGAAGTAA 1757795
Query 54623 TTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663
||||| || || || || ||||| || || ||||||||
Sbjct 1757794 TTGTAAGAGAAATCGCGATCGTAGATTATGCAAGAGTTGAG 1757754
Score = 93.3 bits (102), Expect = 5e-14
Identities = 327/508 (64%), Gaps = 6/508 (1%)
Strand=Plus/Minus
Query 53398 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGT 53457
||| || || || | || || | ||| |||| || || || || | ||||| | ||
Sbjct 1762454 GTACGGCCCATCTCTTTCGGCAATTTCGGAACTTGCTTCCAAGGCGGCATAATACAAAGT 1762395
Query 53458 TTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 53517
|||||| || | | ||| || | || ||| |||| ||||| || | | |||
Sbjct 1762394 TTCGAAAATTTGCACATTGAGTGAACGAGCCTCCGGGCTCTCAAACGGCATACGCAGGAG 1762335
Query 53518 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 53577
||| || | || || || ||||| || || || ||||| |||| |||||| ||| ||
Sbjct 1762334 AATGAAAGTATCGGCCAAACCTTGCACCCCTATTCCGATCGGTCGGTGTCTCAAATTCGA 1762275
Query 53578 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGAC 53637
|| ||| || || | || || | | | ||||| || ||||| ||| ||
Sbjct 1762274 CGTTCGAGCCTCAGGGCTCGGGTACGCACTTACGTCTATCGCCTTGTTGAGATTTTTGGT 1762215
Query 53638 AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATTGTCCATCT----ATT-AC 53691
| |||||||| | |||| || ||||| || || | | ||| ||
Sbjct 1762214 TAAGGTCTTGACCACTTGTTTCAACTTTTCGAAATCGTAACCGTTCCGTTCCGGATTCAC 1762155
Query 53692 AAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATA 53751
|||||||| | ||||| || ||| | ||||| |||| | || | || | ||
Sbjct 1762154 GAACATGTTTAGTGCAACTGAGGCCGTAATACAAGCGGCAATTTCGTCAGAAGAGCTGTA 1762095
Query 53752 TTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 53811
||| ||| || |||| | | | |||| ||||| || ||||||||||| || || ||
Sbjct 1762094 TTGAATTGATTCGGTGCTCAAACTGCTACTTTTGATCGTCCCTAAATTTTGCTGGTTGCT 1762035
Query 53812 CTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTC 53871
||||| || || |||||||| || | ||| | |||| || ||||| ||||| || |
Sbjct 1762034 TTTTTTATTGCAAGCATCCTTGTACAAAATATAGGGCGAGCCTGTTTCCATCTGTGAGAC 1761975
Query 53872 TATAATCGCTTTCCAGACGACACGAGCC 53899
||||| ||||||| | || |||
Sbjct 1761974 GCAGATCGCGCGCCAGACGTCCCGTGCC 1761947
>seq5
Length=15459558
Score = 264 bits (292), Expect = 1e-65
Identities = 626/939 (67%), Gaps = 14/939 (1%)
Strand=Plus/Minus
Query 23787 CTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAGACATAACTCCCATTTTT 23846
||||||||||| | ||||| | | | | | || | | || | ||||| | ||
Sbjct 2625117 CTTTAAAAGTCCAAATCTAGATGGTACTCCTCGGTTTGCTCACACGTGACTCCGCTCTTC 2625058
Query 23847 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCC 23906
|||||||| ||||| || || || ||||| || || ||||| || ||| | |
Sbjct 2625057 TGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTGGAAATAATCGTC 2624998
Query 23907 ATGAAATCGGATGGATTG-GTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCAA 23965
||||||||| | ||||| || | || |||||| | | | ||||| || | |||
Sbjct 2624997 ATGAAATCGAACGGATTCTGTGAG-TTGTAGATTTTCTCGCACCCCAACTCGCCCAACAA 2624939
Query 23966 TCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 24025
||| || || ||||| || || ||| ||||| | || |||||||| || | |
Sbjct 2624938 TCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATTCCAATCATGCT 2624879
Query 24026 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 24085
||||| | ||| |||| | ||||| | || || |||||||||| ||||| |
Sbjct 2624878 GACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCTTGGATAAT-GC 2624820
Query 24086 TCTTACTGT-TTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 24144
| | | | ||||| ||| | || || || ||||||||||| || ||||
Sbjct 2624819 TTTGAATCCGTTCTTTGGACGGCTTCTGCACCAAGTGAGAGAACATCAAACAGGCAAAAT 2624760
Query 24145 CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 24204
|||| ||||| |||||||| || ||| | ||| |||||||| ||||| || ||||| |
Sbjct 2624759 CGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGGCATAA 2624700
Query 24205 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTA 24264
| |||||||||||||| || || || ||||| ||||| |||||||| ||||| |
Sbjct 2624699 GATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAATCCCTTCGA 2624640
Query 24265 CTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATG-----TATCCACTT 24319
| || ||||| || | | || ||| ||| || | ||| || || |||||||
Sbjct 2624639 CGGCGGCAAACGCCACGATTCGTTCGCCAAAA--GTCGCGTTCTTGCTGTTTATCCACAG 2624582
Query 24320 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 24379
||||| ||||||||||| || ||||| |||| ||||| || ||||| || | |
Sbjct 2624581 CAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGAACAAGAA 2624522
Query 24380 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 24439
| || || | || || || || || ||||| | || ||||| ||||||||
Sbjct 2624521 CTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTGTACATCTCCGAATG 2624462
Query 24440 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 24499
||||||||||| || ||||| || ||||| || || | ||| ||||| | || || ||
Sbjct 2624461 GATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCGGTCACTTGCACCTC 2624402
Query 24500 TATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 24559
| || | || | | ||||| || || ||||||||| |||||| ||||| ||
Sbjct 2624401 CTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAGGCTGCGAAAAATGC 2624342
Query 24560 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCCAATCATTGAT 24616
| || || || || || ||| || | | ||| || ||||| || | |
Sbjct 2624341 AAGAACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTTGTTCTTCCAGTCGTCCAA 2624282
Query 24617 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 24676
|||||| || | ||| |||||||| |||||||| || || || || | || || |
Sbjct 2624281 ATCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTCCGCTTGCTTGTATTT 2624222
Query 24677 ATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715
| ||| ||||| | || || || ||||| | |||||
Sbjct 2624221 GTCCCAAATGTCGGGGTACTGGATGGGAAAGACCACAAA 2624183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593706148395360
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