Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq7 122 7e-23
>seq7
Length=16482863
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
|||||||| ||| | ||||| |||| ||||||||||| ||| ||| ||||| |
Sbjct 10793158 ATGCAAATTTTCGTTAAAACTCTGACTGGCAAAACCATCACCCTGGAAGTCGAACCTTCT 10793099
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | | | ||| || ||| || ||||| ||| | || ||| |||
Sbjct 10793098 GATACAATTGAGAACGTCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCAGACCAA 10793039
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|||||| | |||||||| || |||||||| ||||| | ||| | |||||||||||
Sbjct 10793038 CAAAGATTGATCTTTGCTGGAAAACAACTAGAAGACGGCCGTACTCTTTCCGATTACAAT 10792979
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
|| ||||||||||| ||||| ||| ||||||| || | ||||| ||
Sbjct 10792978 ATCCAGAAGGAATCCACTCTCCACTTGGTGTTGCGTCTCCGAGGTGG 10792932
Score = 111 bits (122), Expect = 1e-19
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
|||||||| ||| | || || ||||| || ||||| ||||| ||| || || |
Sbjct 10792702 ATGCAAATTTTCGTGAAGACGTTGACTGGGAAAACAATTACGTTGGAAGTTGAGCCATCG 10792643
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| ||| | | || | ||| |||||| ||||| |||||| | ||| ||| ||
Sbjct 10792642 GACACGATTGAAAATGTGAAGGCCAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCAG 10792583
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139
|||||| | ||||||||||| ||||| |||||||| || | ||| | | || ||||
Sbjct 10792582 CAAAGATTGATCTTTGCGGGAAAACAGTTGGAAGATGGTCGCACACTTT--CGGACTACA 10792525
Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
|||| || |||||||| |||||||| | || ||||| | || |||||
Sbjct 10792524 ATATCCAAAAGGAATCCACTCTTCATCTAGTCTTACGTCTTCGCGGAGG 10792476
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||| || ||| |||| || ||||| || ||||||||||| ||| ||||| |
Sbjct 10794070 ATGCAGATCTTCGTCAAGACCTTGACTGGGAAAACCATTACTTTGGAAGTCGAACCTTCC 10794011
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| ||| | | | | ||| || ||| ||||| ||||| | || ||| |||
Sbjct 10794010 GACACGATTGAAAACGTCAAGGCTAAGATTCAGGATAAGGAAGGGATCCCACCAGACCAA 10793951
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|||||| | |||||||| || |||||||| |||||| || | | ||||||||
Sbjct 10793950 CAAAGATTGATCTTTGCCGGGAAACAACTAGAAGATGGGCGTACCCTCTCAGATTACAAC 10793891
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
|| ||||||||||| || |||||| |||| || || || |||| ||
Sbjct 10793890 ATCCAGAAGGAATCCACCCTTCACTTGGTATTGCGTTTGAGAGGTGG 10793844
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
|||||||| ||| | || || |||||||| || || || || ||| |||||| ||
Sbjct 10792930 ATGCAAATTTTCGTGAAGACCTTGACGGGAAAGACGATCACTTTGGAAGTAGAACCCTCA 10792871
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | || |||| ||||| ||||||||||| | || ||||||
Sbjct 10792870 GACACAATTGAGAATGTTAAAGCTAAAATCCAGGATAAAGAAGGCATTCCTCCAGATCAG 10792811
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|| || | |||||||| ||||||||||| |||||| || || | || || |||
Sbjct 10792810 CAGAGGTTGATCTTTGCTGGCAAACAACTCGAAGATGGGCGCACCCTGTCGGACTATAAT 10792751
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
||||| || ||||| || || || | || || || | ||||||||
Sbjct 10792750 ATTCAAAAAGAATCAACCCTACATTTAGTATTGCGTCTGCGAGGAGG 10792704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428325131241710
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |