Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1425 226 3e-54 seq4 87.8 2e-12 >seq1425 Length=145493 Score = 226 bits (250), Expect = 3e-54 Identities = 422/612 (69%), Gaps = 17/612 (3%) Strand=Plus/Plus Query 145789 TAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGG 145848 || ||||| || ||||| ||||||||||| ||||| ||||||| | |||||||||| Sbjct 66476 TAACTGGCGATATTGAACGGCACCCCCAGGCCCATATCCCCCGCCCTCTGGTACAGCAAA 66535 Query 145849 CAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCC 145908 ||| ||||| || | |||||| | ||||| ||| ||| || |||||||| ||| Sbjct 66536 CAGCTCAGCTCGCCCTCGGCCACGAAAAACTGCGCCAGACAGTGACATGGCGGCAGCGCC 66595 Query 145909 ATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTC-TCGGGGTT 145967 || | ||| || ||| ||||| || | | || | ||||| | || | || || Sbjct 66596 ATTTTGTGCAAATCTTTCGGATTCCACGCCGACATGATAATCCTCC-GATCGTTCGGATT 66654 Query 145968 CCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGT 146027 | || | ||| ||| | | ||||||||||| |||| | ||| || Sbjct 66655 CGTCCTAATCGTGTGTATGACCCGCGCCAGCTGGTCCACCCCCTCGTTCGTGTAGTCCCC 66714 Query 146028 CTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAG 146087 || | || |||| | ||||| ||||||| ||||||||||||||||| ||||||||| Sbjct 66715 CTGGACCCCCTTGTACTCCGCCCCAAAGTGCCGCCACTGGAACCCGTAGATGGGCCCCAG 66774 Query 146088 GTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCG----GGCGAGGAAGTCCCGGGAC--CC 146141 |||||| |||| || | || || |||| | | || || | || ||| | Sbjct 66775 GTCCCC---CTCCTCGTACTCCT-CCAAGCCCACTGAGTCCAGAAA--CGCGCGACTGCT 66828 Query 146142 GTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCT 146201 |||||||||||| || | ||| || | ||| || || || | ||| || || | Sbjct 66829 GTTGGCGTCCCAAATGTGCACGTTTTTCTCCTTGAGGTCGTTCGAATTCGTCGAGCCTTT 66888 Query 146202 GATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAG 146261 |||||||||||||||||| |||| ||| | | |||||| |||| ||||||||||||||| Sbjct 66889 GATGAACCAGAGCAGCTCCTCGACGACAGCGCGCCAGAAAACCCGCTTGGTGGTCAGCAG 66948 Query 146262 GGGGAAC---TGGCCCCGCAGGGAGTACTTGGCCTGGTCCCCGAAGACGGACAGGGTGCC 146318 || ||| | |||| |||||||| |||| ||||||| | ||||| || || Sbjct 66949 CGGAAACACGTTATCCCGGAGGGAGTAGCGCATCTGGACCCCGAAAATCGACAGAGTCCC 67008 Query 146319 CACGCCCGTCCTGTCCCCCCTGCGCACCCCGTTCGCCAGGATCTCCCTGACGGTGTTGAG 146378 | || ||||||||| ||| | ||||| || ||||||||| | || | | ||| Sbjct 67009 GATGCGGGTCCTGTCCATCCTCTGGACCCCCTTTTCCAGGATCTGGCGGATGTGGGAGAG 67068 Query 146379 GTACTGGTGCTC 146390 |||||||| ||| Sbjct 67069 GTACTGGTACTC 67080 >seq4 Length=12290766 Score = 87.8 bits (96), Expect = 2e-12 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 145762 TGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCC 145821 || || | ||| || |||| || ||| || || || || ||||| ||||||||||||||| Sbjct 288617 TGTGCAATCATATACGTCAACAAGGAATAACTTGCAATATTGAACGGCACCCCCAGCCCC 288558 Query 145822 ATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGG 145881 || || |||| | ||||||| | || || | ||||| ||||| | |||| | Sbjct 288557 ATATCAGCCGACCTTTGGTACAACAAACACGACAATTCCCCATTTGCCACAAAAAACT-G 288499 Query 145882 CAC-AGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGC 145937 ||| ||| ||| || ||||| |||||||| |||| | ||| | || ||||| || Sbjct 288498 CACGAGGCAGTGACAAGGCGGGAGGGCCATTTCGGGAATATCCACTGGATTCCACGC 288442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590061443251280