Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq1425 226 3e-54
seq4 87.8 2e-12
>seq1425
Length=145493
Score = 226 bits (250), Expect = 3e-54
Identities = 422/612 (69%), Gaps = 17/612 (3%)
Strand=Plus/Plus
Query 145789 TAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGG 145848
|| ||||| || ||||| ||||||||||| ||||| ||||||| | ||||||||||
Sbjct 66476 TAACTGGCGATATTGAACGGCACCCCCAGGCCCATATCCCCCGCCCTCTGGTACAGCAAA 66535
Query 145849 CAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCC 145908
||| ||||| || | |||||| | ||||| ||| ||| || |||||||| |||
Sbjct 66536 CAGCTCAGCTCGCCCTCGGCCACGAAAAACTGCGCCAGACAGTGACATGGCGGCAGCGCC 66595
Query 145909 ATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTC-TCGGGGTT 145967
|| | ||| || ||| ||||| || | | || | ||||| | || | || ||
Sbjct 66596 ATTTTGTGCAAATCTTTCGGATTCCACGCCGACATGATAATCCTCC-GATCGTTCGGATT 66654
Query 145968 CCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGT 146027
| || | ||| ||| | | ||||||||||| |||| | ||| ||
Sbjct 66655 CGTCCTAATCGTGTGTATGACCCGCGCCAGCTGGTCCACCCCCTCGTTCGTGTAGTCCCC 66714
Query 146028 CTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAG 146087
|| | || |||| | ||||| ||||||| ||||||||||||||||| |||||||||
Sbjct 66715 CTGGACCCCCTTGTACTCCGCCCCAAAGTGCCGCCACTGGAACCCGTAGATGGGCCCCAG 66774
Query 146088 GTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCG----GGCGAGGAAGTCCCGGGAC--CC 146141
|||||| |||| || | || || |||| | | || || | || ||| |
Sbjct 66775 GTCCCC---CTCCTCGTACTCCT-CCAAGCCCACTGAGTCCAGAAA--CGCGCGACTGCT 66828
Query 146142 GTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCT 146201
|||||||||||| || | ||| || | ||| || || || | ||| || || |
Sbjct 66829 GTTGGCGTCCCAAATGTGCACGTTTTTCTCCTTGAGGTCGTTCGAATTCGTCGAGCCTTT 66888
Query 146202 GATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAG 146261
|||||||||||||||||| |||| ||| | | |||||| |||| |||||||||||||||
Sbjct 66889 GATGAACCAGAGCAGCTCCTCGACGACAGCGCGCCAGAAAACCCGCTTGGTGGTCAGCAG 66948
Query 146262 GGGGAAC---TGGCCCCGCAGGGAGTACTTGGCCTGGTCCCCGAAGACGGACAGGGTGCC 146318
|| ||| | |||| |||||||| |||| ||||||| | ||||| || ||
Sbjct 66949 CGGAAACACGTTATCCCGGAGGGAGTAGCGCATCTGGACCCCGAAAATCGACAGAGTCCC 67008
Query 146319 CACGCCCGTCCTGTCCCCCCTGCGCACCCCGTTCGCCAGGATCTCCCTGACGGTGTTGAG 146378
| || ||||||||| ||| | ||||| || ||||||||| | || | | |||
Sbjct 67009 GATGCGGGTCCTGTCCATCCTCTGGACCCCCTTTTCCAGGATCTGGCGGATGTGGGAGAG 67068
Query 146379 GTACTGGTGCTC 146390
|||||||| |||
Sbjct 67069 GTACTGGTACTC 67080
>seq4
Length=12290766
Score = 87.8 bits (96), Expect = 2e-12
Identities = 127/177 (72%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 145762 TGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCC 145821
|| || | ||| || |||| || ||| || || || || ||||| |||||||||||||||
Sbjct 288617 TGTGCAATCATATACGTCAACAAGGAATAACTTGCAATATTGAACGGCACCCCCAGCCCC 288558
Query 145822 ATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGG 145881
|| || |||| | ||||||| | || || | ||||| ||||| | |||| |
Sbjct 288557 ATATCAGCCGACCTTTGGTACAACAAACACGACAATTCCCCATTTGCCACAAAAAACT-G 288499
Query 145882 CAC-AGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGC 145937
||| ||| ||| || ||||| |||||||| |||| | ||| | || ||||| ||
Sbjct 288498 CACGAGGCAGTGACAAGGCGGGAGGGCCATTTCGGGAATATCCACTGGATTCCACGC 288442
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590061443251280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |