Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq5 318 6e-82
seq7 138 1e-27
seq2 129 6e-25
seq4 127 2e-24
>seq5
Length=15459558
Score = 318 bits (352), Expect = 6e-82
Identities = 585/852 (69%), Gaps = 13/852 (2%)
Strand=Plus/Plus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
||||| || |||| || ||||| |||||||| ||| | || ||||| || ||||| |||
Sbjct 2624153 GAGCCCCTTCTGCAGGAAAACCCGCGCCGGTTTGTGGTCTTTCCCATCCAGTACCCCGAC 2624212
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| ||| || ||||| | || || || ||||| ||||| ||| || || || ||
Sbjct 2624213 ATTTGGGACAAATACAAGCAAGCGGAAGCCTCGTTTTGGACGACCGAAGAAGTAGATTTG 2624272
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752
|| || || | ||||||| || | |||| | || ||| | ||||| |
Sbjct 2624273 TCGAAAGATTTGGACGACTGGAAGAACAAACTGAATTCTGATGAACGCTACTTCATTTCG 2624332
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| || || |||||||| ||| ||||| ||||||||||| || || |||||| |
Sbjct 2624333 CACGTTCTTGCATTTTTCGCAGCCTCTGACGGAATCGTCAACGAAAACCTCGTCGAGAGG 2624392
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| ||||||||||| ||| |||| || || ||||| ||||| || || ||||| ||
Sbjct 2624393 TTCAGCCAGGAGGTGCAAGTGACCGAAGCTCGCTGCTTTTACGGGTTCCAAATCGCTATT 2624452
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTC 116928
|| ||| | || ||||| ||||| | | ||||| |||||| | | || |
Sbjct 2624453 GAAAACATCCATTCGGAGATGTACAGCATGTTGATCGAAACGTACATTTCTGAGCCCCA- 2624511
Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988
|||| || || || ||||| || || ||||||||| |||| || || || |||||||
Sbjct 2624512 GGAGAAGGAGTTC---TTGTTCAATGCGATCGAGACGCTGCCCTGTGTTAAGAAGAAGGC 2624568
Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048
||| ||||| ||| ||||| | ||| | || | || ||||| || | |||||
Sbjct 2624569 CGACTGGGCCTTGCTGTGGATAAACAGCAAGAACGCGACTTTTGGCGAACGAATCGTGGC 2624628
Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108
|| || |||||||| || | ||||| || ||||| || || | || || ||||| ||
Sbjct 2624629 GTTTGCCGCCGTCGAAGGGATTTTCTTCTCTGGCAGCTTTGCTTCGATTTTCTGGCTTAA 2624688
Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168
|| || || ||||| || || || || ||| || || || || |||||||||||
Sbjct 2624689 AAAGCGGAATCTTATGCCAGGTCTCACATTTTCCAATGAACTGATTTCGAGGGACGAGGG 2624748
Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGC 117228
|| |||||||| |||||||||||| ||||| || ||||||||| ||| | |
Sbjct 2624749 CCTACATTGCGATTTTGCCTGTTTGATGTTCTCTCACTTGGTGCAGAAGCCGTCCAAAGA 2624808
Query 117229 GC-GCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287
| | ||| | || || ||||||||| |||||| || ||| | || ||||
Sbjct 2624809 ACGGATTCAAAG-CATTATCCAAGACGCGGTCAAAATCGAGAAGGAATTCTTGACTGAAG 2624867
Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347
| | || || | || | ||| | || |||| ||||| ||||||||||| || |
Sbjct 2624868 CTTTACCAGTCAGCATGATTGGAATGAACTGCGCTTTGATGTGCCAATACATCGAATTTG 2624927
Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407
| |||||||| || || |||| ||| ||| || ||||||| | | || |||
Sbjct 2624928 TGGCCGACAGATTGTTGGGCGAGTTGGGGTGCGAGAAAATCTACAACTCACAGAATCCGT 2624987
Query 117408 TGGACTTTATGA 117419
| || || ||||
Sbjct 2624988 TCGATTTCATGA 2624999
>seq7
Length=16482863
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || || |||||||||||| | || ||||| || ||
Sbjct 10794526 ATGCAGATCTTCGTGAAGACTTTGACTGGTAAAACCATCACCTTGGAGGTCGAGCCCTCC 10794467
Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | ||||| |||| | || || | ||||| || || |||||| | |||||
Sbjct 10794466 GATACCATCGAAAACG-TCAAAGCTAAGATCCAGGACAAGGAAGGTATCCCCCCAGACCA 10794408
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| | |||| ||| |||||||| || || |||| ||||| | ||||||||
Sbjct 10794407 GCAACGTTTGATCTTCGCTGGCAAACAACTCGAAGACGGACGCACTTTGTCTGACTACAA 10794348
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||| | ||||| || | || ||| | |||||||||||
Sbjct 10794347 CATCCAGAAGGAATCGACGCTCCACTTGGTTTTGAGATTGAGGGGCGG 10794300
Score = 134 bits (148), Expect = 1e-26
Identities = 161/216 (75%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || | || || ||||| ||||| | || |||||| | |
Sbjct 10793614 ATGCAAATTTTCGTGAAGACTTTGACTGGAAAAACGATCACTCTTGAAGTCGAACCTTCG 10793555
Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | ||||| | |||| ||||||| ||||||||||| || ||| | || ||
Sbjct 10793554 GACACAATCGAAAACG-TGAAGGCGAAAATTCAGGACAAAGAGGGGATTCCCCCAGATCA 10793496
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||| || | || | ||| ||||||||| |||| || | ||||| ||| |||||||||
Sbjct 10793495 GCAAAGATTGATTTTCGCCGGCAAACAGTTGGAGGATGGTCGCACACTCTCCGACTACAA 10793436
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||||||| ||| | || || || | ||||||||
Sbjct 10793435 CATCCAGAAAGAGTCGACCCTCCACTTGGTGTTGCG 10793400
Score = 131 bits (144), Expect = 2e-25
Identities = 160/216 (74%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| ||||| || || ||||||||||||||| | || |||||| | |
Sbjct 10793158 ATGCAAATTTTCGTTAAAACTCTGACTGGCAAAACCATCACCCTGGAAGTCGAACCTTCT 10793099
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | |||| |||||| || |||| ||||||||||| ||||| | |||||
Sbjct 10793098 GATACAATTGAGAACG-TCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCAGACCA 10793040
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| || || ||||| || || |||| || || || ||| |||||
Sbjct 10793039 ACAAAGATTGATCTTTGCTGGAAAACAACTAGAAGACGGCCGTACTCTTTCCGATTACAA 10792980
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||||||||| |||| || || | ||||||||
Sbjct 10792979 TATCCAGAAGGAATCCACTCTCCACTTGGTGTTGCG 10792944
Score = 122 bits (134), Expect = 9e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || || |||||||| || | || |||||| | ||
Sbjct 10794070 ATGCAGATCTTCGTCAAGACCTTGACTGGGAAAACCATTACTTTGGAAGTCGAACCTTCC 10794011
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | || ||||| |||||| || |||| || || || || ||||| | |||||
Sbjct 10794010 GACACGATTGAAAACG-TCAAGGCTAAGATTCAGGATAAGGAAGGGATCCCACCAGACCA 10793952
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| || || ||||| || || || | ||| |||||| || |||||
Sbjct 10793951 ACAAAGATTGATCTTTGCCGGGAAACAACTAGAAGATGGGCGTACCCTCTCAGATTACAA 10793892
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||| |||| || || | || ||||| ||||| || |||
Sbjct 10793891 CATCCAGAAGGAATCCACCCTTCACTTGGTATTGCGTTTGAGAGGTGGC 10793843
Score = 113 bits (124), Expect = 5e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||| ||||| |||||||| | || || || || |
Sbjct 10794298 ATGCAAATCTTCGTTAAGACACTCACTGGCAAGACCATCACTCTGGAAGTTGAGCCCTCT 10794239
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | |||| |||| | || || | ||||| ||||||||||| | || ||
Sbjct 10794238 GATACGATCGAGAACG-TCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGATCA 10794180
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| || | || | ||| || ||||| || || |||| |||||| | ||| |||||
Sbjct 10794179 ACAGCGTTTGATTTTCGCTGGTAAACAACTCGAAGACGGACGCACCTTGTCCGATTACAA 10794120
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||| |||| || || | || ||||| ||||||| |||
Sbjct 10794119 CATCCAGAAGGAATCCACCCTTCACTTGGTTTTGCGTCTGAGGGGAGGC 10794071
Score = 107 bits (118), Expect = 2e-18
Identities = 155/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| |||||||| || | || || || || ||||| | || || ||| | |
Sbjct 10793386 ATGCAAATCTTCGTAAAGACTTTGACTGGGAAGACGATCACTTTGGAAGTAGAACCATCG 10793327
Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | ||||| | |||| ||||||| ||||||||||| || ||| | || ||
Sbjct 10793326 GACACTATCGAAAACGTT-AAGGCGAAAATTCAGGACAAAGAGGGGATTCCCCCAGATCA 10793268
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | | |||| ||| ||||||||||| || || | || || ||| |||||||||
Sbjct 10793267 GCAGAGGTTGATCTTCGCCGGCAAACAGCTCGAAGATGGCCGAACTCTCTCCGACTACAA 10793208
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||| || || || | || || || |||| |||||
Sbjct 10793207 CATTCAAAAAGAATCAACACTCCACTTAGTATTGCG 10793172
>seq2
Length=15265516
Score = 129 bits (142), Expect = 6e-25
Identities = 161/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 40681 CTCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 40740
|||| | |||||| || ||||| ||||| || || ||||| ||||||||| | || |||
Sbjct 12970116 CTCCCCACAATGCAGATTTTCGTTAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTC 12970175
Query 40741 GAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCC 40800
|| | | || | | | | | || | || |||| || |||||||| || |||
Sbjct 12970176 GAGCCGTCAGATACTATCGAGAATGTGAAAGCTAAGATTCAGGATAAAGAGGGGATTCCC 12970235
Query 40801 GCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 40860
|||| |||||||| ||||||| ||| || |||||||| || || | || |||||| |
Sbjct 12970236 CCGGATCAGCAACGTCTCATCTTCGCCGGGAAACAGCTCGAGGATGGACGTACCCTCTCC 12970295
Query 40861 GACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901
|| ||||| ||||||||||| |||| || || ||||| ||
Sbjct 12970296 GATTACAATATCCAGAAGGAATCCACCCTTCACCTAGTTTT 12970336
>seq4
Length=12290766
Score = 127 bits (140), Expect = 2e-24
Identities = 157/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| ||||| || || ||||| |||||||| | || ||||| | |
Sbjct 489165 ATGCAAATTTTCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAGCCTTCA 489106
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | ||| |||| | ||||||| ||||| || ||||| ||| | || ||
Sbjct 489105 GACACCATCGAAAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCCGATCAA 489046
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || | || | ||||| ||||||||||| || | ||||| | ||| ||||||
Sbjct 489045 CAGCGTTTGATTTTTGCGGGTAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAAC 488986
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||||||||| |||| || ||| |||| |||||
Sbjct 488985 ATCCAGAAGGAATCCACCCTTCATTTAGTTTTGCG 488951
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515205791420320
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