Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5 318 6e-82 seq7 138 1e-27 seq2 129 6e-25 seq4 127 2e-24 >seq5 Length=15459558 Score = 318 bits (352), Expect = 6e-82 Identities = 585/852 (69%), Gaps = 13/852 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| || |||| || ||||| |||||||| ||| | || ||||| || ||||| ||| Sbjct 2624153 GAGCCCCTTCTGCAGGAAAACCCGCGCCGGTTTGTGGTCTTTCCCATCCAGTACCCCGAC 2624212 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||| || ||||| | || || || ||||| ||||| ||| || || || || Sbjct 2624213 ATTTGGGACAAATACAAGCAAGCGGAAGCCTCGTTTTGGACGACCGAAGAAGTAGATTTG 2624272 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752 || || || | ||||||| || | |||| | || ||| | ||||| | Sbjct 2624273 TCGAAAGATTTGGACGACTGGAAGAACAAACTGAATTCTGATGAACGCTACTTCATTTCG 2624332 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || |||||||| ||| ||||| ||||||||||| || || |||||| | Sbjct 2624333 CACGTTCTTGCATTTTTCGCAGCCTCTGACGGAATCGTCAACGAAAACCTCGTCGAGAGG 2624392 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||||||||| ||| |||| || || ||||| ||||| || || ||||| || Sbjct 2624393 TTCAGCCAGGAGGTGCAAGTGACCGAAGCTCGCTGCTTTTACGGGTTCCAAATCGCTATT 2624452 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTC 116928 || ||| | || ||||| ||||| | | ||||| |||||| | | || | Sbjct 2624453 GAAAACATCCATTCGGAGATGTACAGCATGTTGATCGAAACGTACATTTCTGAGCCCCA- 2624511 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 |||| || || || ||||| || || ||||||||| |||| || || || ||||||| Sbjct 2624512 GGAGAAGGAGTTC---TTGTTCAATGCGATCGAGACGCTGCCCTGTGTTAAGAAGAAGGC 2624568 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 ||| ||||| ||| ||||| | ||| | || | || ||||| || | ||||| Sbjct 2624569 CGACTGGGCCTTGCTGTGGATAAACAGCAAGAACGCGACTTTTGGCGAACGAATCGTGGC 2624628 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 || || |||||||| || | ||||| || ||||| || || | || || ||||| || Sbjct 2624629 GTTTGCCGCCGTCGAAGGGATTTTCTTCTCTGGCAGCTTTGCTTCGATTTTCTGGCTTAA 2624688 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 || || || ||||| || || || || ||| || || || || ||||||||||| Sbjct 2624689 AAAGCGGAATCTTATGCCAGGTCTCACATTTTCCAATGAACTGATTTCGAGGGACGAGGG 2624748 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGC 117228 || |||||||| |||||||||||| ||||| || ||||||||| ||| | | Sbjct 2624749 CCTACATTGCGATTTTGCCTGTTTGATGTTCTCTCACTTGGTGCAGAAGCCGTCCAAAGA 2624808 Query 117229 GC-GCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 | | ||| | || || ||||||||| |||||| || ||| | || |||| Sbjct 2624809 ACGGATTCAAAG-CATTATCCAAGACGCGGTCAAAATCGAGAAGGAATTCTTGACTGAAG 2624867 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347 | | || || | || | ||| | || |||| ||||| ||||||||||| || | Sbjct 2624868 CTTTACCAGTCAGCATGATTGGAATGAACTGCGCTTTGATGTGCCAATACATCGAATTTG 2624927 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407 | |||||||| || || |||| ||| ||| || ||||||| | | || ||| Sbjct 2624928 TGGCCGACAGATTGTTGGGCGAGTTGGGGTGCGAGAAAATCTACAACTCACAGAATCCGT 2624987 Query 117408 TGGACTTTATGA 117419 | || || |||| Sbjct 2624988 TCGATTTCATGA 2624999 >seq7 Length=16482863 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || |||||||||||| | || ||||| || || Sbjct 10794526 ATGCAGATCTTCGTGAAGACTTTGACTGGTAAAACCATCACCTTGGAGGTCGAGCCCTCC 10794467 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | ||||| |||| | || || | ||||| || || |||||| | ||||| Sbjct 10794466 GATACCATCGAAAACG-TCAAAGCTAAGATCCAGGACAAGGAAGGTATCCCCCCAGACCA 10794408 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| ||| |||||||| || || |||| ||||| | |||||||| Sbjct 10794407 GCAACGTTTGATCTTCGCTGGCAAACAACTCGAAGACGGACGCACTTTGTCTGACTACAA 10794348 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | ||||| || | || ||| | ||||||||||| Sbjct 10794347 CATCCAGAAGGAATCGACGCTCCACTTGGTTTTGAGATTGAGGGGCGG 10794300 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || || ||||| ||||| | || |||||| | | Sbjct 10793614 ATGCAAATTTTCGTGAAGACTTTGACTGGAAAAACGATCACTCTTGAAGTCGAACCTTCG 10793555 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| | |||| ||||||| ||||||||||| || ||| | || || Sbjct 10793554 GACACAATCGAAAACG-TGAAGGCGAAAATTCAGGACAAAGAGGGGATTCCCCCAGATCA 10793496 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| || | || | ||| ||||||||| |||| || | ||||| ||| ||||||||| Sbjct 10793495 GCAAAGATTGATTTTCGCCGGCAAACAGTTGGAGGATGGTCGCACACTCTCCGACTACAA 10793436 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||| ||| | || || || | |||||||| Sbjct 10793435 CATCCAGAAAGAGTCGACCCTCCACTTGGTGTTGCG 10793400 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || ||||||||||||||| | || |||||| | | Sbjct 10793158 ATGCAAATTTTCGTTAAAACTCTGACTGGCAAAACCATCACCCTGGAAGTCGAACCTTCT 10793099 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| |||||| || |||| ||||||||||| ||||| | ||||| Sbjct 10793098 GATACAATTGAGAACG-TCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCAGACCA 10793040 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || || ||||| || || |||| || || || ||| ||||| Sbjct 10793039 ACAAAGATTGATCTTTGCTGGAAAACAACTAGAAGACGGCCGTACTCTTTCCGATTACAA 10792980 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||| |||| || || | |||||||| Sbjct 10792979 TATCCAGAAGGAATCCACTCTCCACTTGGTGTTGCG 10792944 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || |||||||| || | || |||||| | || Sbjct 10794070 ATGCAGATCTTCGTCAAGACCTTGACTGGGAAAACCATTACTTTGGAAGTCGAACCTTCC 10794011 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||||| |||||| || |||| || || || || ||||| | ||||| Sbjct 10794010 GACACGATTGAAAACG-TCAAGGCTAAGATTCAGGATAAGGAAGGGATCCCACCAGACCA 10793952 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || || ||||| || || || | ||| |||||| || ||||| Sbjct 10793951 ACAAAGATTGATCTTTGCCGGGAAACAACTAGAAGATGGGCGTACCCTCTCAGATTACAA 10793892 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || || | || ||||| ||||| || ||| Sbjct 10793891 CATCCAGAAGGAATCCACCCTTCACTTGGTATTGCGTTTGAGAGGTGGC 10793843 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| |||||||| | || || || || | Sbjct 10794298 ATGCAAATCTTCGTTAAGACACTCACTGGCAAGACCATCACTCTGGAAGTTGAGCCCTCT 10794239 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| |||| | || || | ||||| ||||||||||| | || || Sbjct 10794238 GATACGATCGAGAACG-TCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGATCA 10794180 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | || | ||| || ||||| || || |||| |||||| | ||| ||||| Sbjct 10794179 ACAGCGTTTGATTTTCGCTGGTAAACAACTCGAAGACGGACGCACCTTGTCCGATTACAA 10794120 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || || | || ||||| ||||||| ||| Sbjct 10794119 CATCCAGAAGGAATCCACCCTTCACTTGGTTTTGCGTCTGAGGGGAGGC 10794071 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| || | || || || || ||||| | || || ||| | | Sbjct 10793386 ATGCAAATCTTCGTAAAGACTTTGACTGGGAAGACGATCACTTTGGAAGTAGAACCATCG 10793327 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| | |||| ||||||| ||||||||||| || ||| | || || Sbjct 10793326 GACACTATCGAAAACGTT-AAGGCGAAAATTCAGGACAAAGAGGGGATTCCCCCAGATCA 10793268 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| ||| ||||||||||| || || | || || ||| ||||||||| Sbjct 10793267 GCAGAGGTTGATCTTCGCCGGCAAACAGCTCGAAGATGGCCGAACTCTCTCCGACTACAA 10793208 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| || || || | || || || |||| ||||| Sbjct 10793207 CATTCAAAAAGAATCAACACTCCACTTAGTATTGCG 10793172 >seq2 Length=15265516 Score = 129 bits (142), Expect = 6e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 40681 CTCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 40740 |||| | |||||| || ||||| ||||| || || ||||| ||||||||| | || ||| Sbjct 12970116 CTCCCCACAATGCAGATTTTCGTTAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTC 12970175 Query 40741 GAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCC 40800 || | | || | | | | | || | || |||| || |||||||| || ||| Sbjct 12970176 GAGCCGTCAGATACTATCGAGAATGTGAAAGCTAAGATTCAGGATAAAGAGGGGATTCCC 12970235 Query 40801 GCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 40860 |||| |||||||| ||||||| ||| || |||||||| || || | || |||||| | Sbjct 12970236 CCGGATCAGCAACGTCTCATCTTCGCCGGGAAACAGCTCGAGGATGGACGTACCCTCTCC 12970295 Query 40861 GACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 || ||||| ||||||||||| |||| || || ||||| || Sbjct 12970296 GATTACAATATCCAGAAGGAATCCACCCTTCACCTAGTTTT 12970336 >seq4 Length=12290766 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || ||||| |||||||| | || ||||| | | Sbjct 489165 ATGCAAATTTTCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAGCCTTCA 489106 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||| | ||||||| ||||| || ||||| ||| | || || Sbjct 489105 GACACCATCGAAAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCCGATCAA 489046 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | ||||| ||||||||||| || | ||||| | ||| |||||| Sbjct 489045 CAGCGTTTGATTTTTGCGGGTAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAAC 488986 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||| |||| || ||| |||| ||||| Sbjct 488985 ATCCAGAAGGAATCCACCCTTCATTTAGTTTTGCG 488951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515205791420320