Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq4 120 2e-22 >seq4 Length=12290766 Score = 120 bits (132), Expect = 2e-22 Identities = 241/349 (69%), Gaps = 10/349 (3%) Strand=Plus/Minus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 || ||||| || |||||| | || || | ||||| || ||||| || || |||||||| Sbjct 288623 GTAACATGTGCAATCATATACGTCAACAAGGAATAACTTGCAATATTGAACGGCACCCCC 288564 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 || ||||||||||| || ||||| || ||| ||| || | | |||| |||| || Sbjct 288563 AGCCCCATATCAGCCGACCTTTGGTACAACAAACACGACAATTCCCCATTTGCCACAAAA 288504 Query 97237 AACTGACTCAATACA-TGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCA 97295 ||||| | | | || ||||| || || | ||||||| |||| ||| | |||||| Sbjct 288503 AACTG-CACGAGGCAGTGACAAGGCGGGAGGGCCATTTCGGGAATATCCACTGGATTCCA 288445 Query 97296 AGCACACATCAACATTCTTCTATCGGTTGGGTTT-GTGTGTATGGTATTAATTATCTGCT 97354 |||||||| | ||||| ||||| ||||||||| | | || || | || | || Sbjct 288444 CGCACACATTATGATTCTCCTATC-GTTGGGTTTATTACGAATTGTTTCGATAACATGAG 288386 Query 97355 TTAATTGATCAACGCCTTCTCCACCATAAT---TGTGCTTAAGACCTTGATATTCTGCTC 97411 ||||| |||| |||| | |||| |||| | ||||| || || || | Sbjct 288385 CCAATTGGTCAATCCCTTGATTGGCGTAATCCCAGTGC--ATCCCCTTG-TACTCGGCCC 288329 Query 97412 CAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTC 97460 |||| || | ||| ||||| |||||||| ||||| || || || || || Sbjct 288328 CAAAGTGGCGCCACTGGAAACCATAAACCGGTCCCAGATCGCCCTCCTC 288280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346775200572740