Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_001987.1
Length=108409
Score E
Sequences producing significant alignments: (Bits) Value
seq4 120 2e-22
>seq4
Length=12290766
Score = 120 bits (132), Expect = 2e-22
Identities = 241/349 (69%), Gaps = 10/349 (3%)
Strand=Plus/Minus
Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176
|| ||||| || |||||| | || || | ||||| || ||||| || || ||||||||
Sbjct 288623 GTAACATGTGCAATCATATACGTCAACAAGGAATAACTTGCAATATTGAACGGCACCCCC 288564
Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236
|| ||||||||||| || ||||| || ||| ||| || | | |||| |||| ||
Sbjct 288563 AGCCCCATATCAGCCGACCTTTGGTACAACAAACACGACAATTCCCCATTTGCCACAAAA 288504
Query 97237 AACTGACTCAATACA-TGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCA 97295
||||| | | | || ||||| || || | ||||||| |||| ||| | ||||||
Sbjct 288503 AACTG-CACGAGGCAGTGACAAGGCGGGAGGGCCATTTCGGGAATATCCACTGGATTCCA 288445
Query 97296 AGCACACATCAACATTCTTCTATCGGTTGGGTTT-GTGTGTATGGTATTAATTATCTGCT 97354
|||||||| | ||||| ||||| ||||||||| | | || || | || | ||
Sbjct 288444 CGCACACATTATGATTCTCCTATC-GTTGGGTTTATTACGAATTGTTTCGATAACATGAG 288386
Query 97355 TTAATTGATCAACGCCTTCTCCACCATAAT---TGTGCTTAAGACCTTGATATTCTGCTC 97411
||||| |||| |||| | |||| |||| | ||||| || || || |
Sbjct 288385 CCAATTGGTCAATCCCTTGATTGGCGTAATCCCAGTGC--ATCCCCTTG-TACTCGGCCC 288329
Query 97412 CAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTC 97460
|||| || | ||| ||||| |||||||| ||||| || || || || ||
Sbjct 288328 CAAAGTGGCGCCACTGGAAACCATAAACCGGTCCCAGATCGCCCTCCTC 288280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346775200572740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |