Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4 141 8e-29 seq7 129 5e-25 seq2 114 1e-20 >seq4 Length=12290766 Score = 141 bits (156), Expect = 8e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| || || || | || || || || || |||||||||||| || |||||| ||| Sbjct 488953 CAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCATC 489012 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| |||||||| || || | || | |||||| |||||||| || ||||| |||||||| Sbjct 489013 CTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGAATGCCTTCCTTGTC 489072 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 |||||| ||| || | ||||| |||||| | ||||||||| | || | || Sbjct 489073 CTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACCTCAAGAGTGATGGT 489132 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||||||||||| || ||||| ||||| Sbjct 489133 CTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 134576 GCCGTGAATGGCCAGAGCGACGCGCATGAGCATGTGTTGGGGTCTCTCCATGATCACGTC 134635 |||||| ||| | | |||||||||||| |||||||||||||| | ||| | ||| | | Sbjct 1757903 GCCGTGGATGCCGACAGCGACGCGCATTAGCATGTGTTGGGGGCGCTCAACGATTTTGCC 1757844 Query 134636 GTCGATTTTTAACAAATATCCATTGGTGAGGGTTTTGAAACCGAAATATTTGTAA 134690 || |||||| | ||| || | |||||||||||||||||| || |||||| Sbjct 1757843 GTTGATTTTAAGCAAGTAGGAACGCTCGAGGGTTTTGAAACCGAAGTAATTGTAA 1757789 >seq7 Length=16482863 Score = 129 bits (142), Expect = 5e-25 Identities = 159/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| || ||||||| ||| || ||||||||||||||||| ||| | ||| || ||| Sbjct 10793174 CAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCATC 10793233 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||||| || ||| |||| | | ||||||||| || || || ||||| ||||| Sbjct 10793234 TTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGGAATCCCCTCTTTGTC 10793293 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCG 118704 |||||| ||||| | ||||| ||||||| || | || || || | || | || Sbjct 10793294 CTGAATTTTCGCCTTAACGTTTTCGATAGTGTCCGATGGT-TCTACTTCCAAAGTGATCG 10793352 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || || |||| ||| ||||| || || |||||| Sbjct 10793353 TCTTCCCAGTCAAAGTCTTTACGAAGATTTGCATG 10793387 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||||||||| || |||||||| || |||||||| ||| | ||||| ||| Sbjct 10793402 CAACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGACCATC 10793461 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| | |||||| || ||| | || | | |||||||| || || || ||||| ||||| Sbjct 10793462 CTCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGAATCCCCTCTTTGTC 10793521 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 |||||| || || | ||||| ||||||| ||||| || | || | ||| Sbjct 10793522 CTGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACTTCAAGAGTGATCGT 10793581 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| || |||| ||| || || ||||| |||||| Sbjct 10793582 TTTTCCAGTCAAAGTCTTCACGAAAATTTGCATG 10793615 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||||||||| || || |||||||| || ||||| ||| | ||| || || Sbjct 10793630 CAACACCAAGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCGGAAAGAGTACGGCCGTC 10793689 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || || |||||||||||| |||| | | || || || || || || || |||||||| Sbjct 10793690 TTCAAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCCTTGTC 10793749 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | || || ||||| | || | ||| || | |||||||| | ||| | || Sbjct 10793750 TTGGATCTTGGCCTTAACATTCTCAATGGTATCAGAAGGTTCGACCTCCAAGGTGATGGT 10793809 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| ||||| || ||||| |||||| Sbjct 10793810 CTTGCCAGTCAGGGTTTTGACGAAAATTTGCATG 10793843 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| |||||||| | || || || || || |||||||||||| || ||||| || Sbjct 10794086 CAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTC 10794145 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||| ||||| |||||| | || | |||||| ||||| ||||| |||||||||||||| Sbjct 10794146 TTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCCTCCTTGTC 10794205 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || ||| || | |||| || || | | ||| || || | || | || Sbjct 10794206 CTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAACTTCCAGAGTGATGGT 10794265 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || || || ||||| Sbjct 10794266 CTTGCCAGTGAGTGTCTTAACGAAGATTTGCAT 10794298 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | | ||| || || || | || || ||||||||||| || || || Sbjct 10792702 TACCTCCTCGCAGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCG 10792761 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || |||||| ||| ||||| ||||| ||||| |||| | | ||||||||| |||| Sbjct 10792762 ACAGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAG 10792821 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| || || || ||||| |||||| | || | ||||| | | || | Sbjct 10792822 GAATGCCTTCTTTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTA 10792881 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || | || | ||| || || |||| || || || ||||| |||||| Sbjct 10792882 CTTCCAAAGTGATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCATG 10792931 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||||||||| || || || || || || ||||||||| | ||| || || Sbjct 10792946 CAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAAAGAGTACGGCCGTC 10793005 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || || ||||||||||| |||| | | || || || || || || ||||| ||||| Sbjct 10793006 TTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCCTCTTTGTC 10793065 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | ||| || || || | || | || || | ||||| || | ||| | || Sbjct 10793066 TTGAATCTTAGCCTTGACGTTCTCAATTGTATCAGAAGGTTCGACTTCCAGGGTGATGGT 10793125 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||| ||||||||||| || ||||| |||||| Sbjct 10793126 TTTGCCAGTCAGAGTTTTAACGAAAATTTGCATG 10793159 >seq2 Length=15265516 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 ||| || || | ||| | || || || || || || ||||||||| | || || Sbjct 12970340 TCTTAAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGAGAGGGTACGTCC 12970281 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||||||||||||||| || ||| |||||||||| |||||||| || || || ||||| || Sbjct 12970280 ATCCTCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCCTCTTT 12970221 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 || ||| || ||| || | |||| || || | ||||||||| | ||| | Sbjct 12970220 ATCCTGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCGACCTCAAGGGTGAT 12970161 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| ||||| ||||| || ||||||||||| Sbjct 12970160 GGTCTTGCCAGTCAGGGTTTTAACGAAAATCTGCAT 12970125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433819391824744