Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq4 141 8e-29
seq7 129 5e-25
seq2 114 1e-20
>seq4
Length=12290766
Score = 141 bits (156), Expect = 8e-29
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
||| || || || | || || || || || |||||||||||| || |||||| |||
Sbjct 488953 CAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCATC 489012
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
||| |||||||| || || | || | |||||| |||||||| || ||||| ||||||||
Sbjct 489013 CTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGAATGCCTTCCTTGTC 489072
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
|||||| ||| || | ||||| |||||| | ||||||||| | || | ||
Sbjct 489073 CTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACCTCAAGAGTGATGGT 489132
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||||||||||||||| || ||||| |||||
Sbjct 489133 CTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165
Score = 86.0 bits (94), Expect = 5e-12
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 134576 GCCGTGAATGGCCAGAGCGACGCGCATGAGCATGTGTTGGGGTCTCTCCATGATCACGTC 134635
|||||| ||| | | |||||||||||| |||||||||||||| | ||| | ||| | |
Sbjct 1757903 GCCGTGGATGCCGACAGCGACGCGCATTAGCATGTGTTGGGGGCGCTCAACGATTTTGCC 1757844
Query 134636 GTCGATTTTTAACAAATATCCATTGGTGAGGGTTTTGAAACCGAAATATTTGTAA 134690
|| |||||| | ||| || | |||||||||||||||||| || ||||||
Sbjct 1757843 GTTGATTTTAAGCAAGTAGGAACGCTCGAGGGTTTTGAAACCGAAGTAATTGTAA 1757789
>seq7
Length=16482863
Score = 129 bits (142), Expect = 5e-25
Identities = 159/215 (74%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
||| || ||||||| ||| || ||||||||||||||||| ||| | ||| || |||
Sbjct 10793174 CAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCATC 10793233
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
||||||||||| || ||| |||| | | ||||||||| || || || ||||| |||||
Sbjct 10793234 TTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGGAATCCCCTCTTTGTC 10793293
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCG 118704
|||||| ||||| | ||||| ||||||| || | || || || | || | ||
Sbjct 10793294 CTGAATTTTCGCCTTAACGTTTTCGATAGTGTCCGATGGT-TCTACTTCCAAAGTGATCG 10793352
Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
| || || |||| ||| ||||| || || ||||||
Sbjct 10793353 TCTTCCCAGTCAAAGTCTTTACGAAGATTTGCATG 10793387
Score = 116 bits (128), Expect = 3e-21
Identities = 154/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|||||||||||||| || |||||||| || |||||||| ||| | ||||| |||
Sbjct 10793402 CAACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGACCATC 10793461
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
||| | |||||| || ||| | || | | |||||||| || || || ||||| |||||
Sbjct 10793462 CTCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGAATCCCCTCTTTGTC 10793521
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
|||||| || || | ||||| ||||||| ||||| || | || | |||
Sbjct 10793522 CTGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACTTCAAGAGTGATCGT 10793581
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||| || |||| ||| || || ||||| ||||||
Sbjct 10793582 TTTTCCAGTCAAAGTCTTCACGAAAATTTGCATG 10793615
Score = 102 bits (112), Expect = 7e-17
Identities = 151/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|||||||||||||| || || |||||||| || ||||| ||| | ||| || ||
Sbjct 10793630 CAACACCAAGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCGGAAAGAGTACGGCCGTC 10793689
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| || |||||||||||| |||| | | || || || || || || || ||||||||
Sbjct 10793690 TTCAAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCCTTGTC 10793749
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
| || || ||||| | || | ||| || | |||||||| | ||| | ||
Sbjct 10793750 TTGGATCTTGGCCTTAACATTCTCAATGGTATCAGAAGGTTCGACCTCCAAGGTGATGGT 10793809
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||||| ||||| ||||| || ||||| ||||||
Sbjct 10793810 CTTGCCAGTCAGGGTTTTGACGAAAATTTGCATG 10793843
Score = 100 bits (110), Expect = 2e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
||| |||||||| | || || || || || |||||||||||| || ||||| ||
Sbjct 10794086 CAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTC 10794145
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
||||| ||||| |||||| | || | |||||| ||||| ||||| ||||||||||||||
Sbjct 10794146 TTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCCTCCTTGTC 10794205
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
|| || ||| || | |||| || || | | ||| || || | || | ||
Sbjct 10794206 CTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAACTTCCAGAGTGATGGT 10794265
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || || || || || || || |||||
Sbjct 10794266 CTTGCCAGTGAGTGTCTTAACGAAGATTTGCAT 10794298
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
||||||| || | | ||| || || || | || || ||||||||||| || || ||
Sbjct 10792702 TACCTCCTCGCAGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCG 10792761
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
|| |||||| ||| ||||| ||||| ||||| |||| | | ||||||||| ||||
Sbjct 10792762 ACAGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAG 10792821
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| ||||| || || || ||||| |||||| | || | ||||| | | || |
Sbjct 10792822 GAATGCCTTCTTTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTA 10792881
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
| || | || | ||| || || |||| || || || ||||| ||||||
Sbjct 10792882 CTTCCAAAGTGATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCATG 10792931
Score = 93.3 bits (102), Expect = 4e-14
Identities = 149/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|||||||||||||| || || || || || || ||||||||| | ||| || ||
Sbjct 10792946 CAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAAAGAGTACGGCCGTC 10793005
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| || ||||||||||| |||| | | || || || || || || ||||| |||||
Sbjct 10793006 TTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCCTCTTTGTC 10793065
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
| ||| || || || | || | || || | ||||| || | ||| | ||
Sbjct 10793066 TTGAATCTTAGCCTTGACGTTCTCAATTGTATCAGAAGGTTCGACTTCCAGGGTGATGGT 10793125
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|||||| ||||||||||| || ||||| ||||||
Sbjct 10793126 TTTGCCAGTCAGAGTTTTAACGAAAATTTGCATG 10793159
>seq2
Length=15265516
Score = 114 bits (126), Expect = 1e-20
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582
||| || || | ||| | || || || || || || ||||||||| | || ||
Sbjct 12970340 TCTTAAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGAGAGGGTACGTCC 12970281
Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642
||||||||||||||| || ||| |||||||||| |||||||| || || || ||||| ||
Sbjct 12970280 ATCCTCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCCTCTTT 12970221
Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702
|| ||| || ||| || | |||| || || | ||||||||| | ||| |
Sbjct 12970220 ATCCTGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCGACCTCAAGGGTGAT 12970161
Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| ||||| ||||| ||||| || |||||||||||
Sbjct 12970160 GGTCTTGCCAGTCAGGGTTTTAACGAAAATCTGCAT 12970125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433819391824744
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |