Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 seq7 111 2e-19 seq8 109 6e-19 seq9 105 8e-18 seq2 105 8e-18 >seq5 Length=15459558 Score = 114 bits (126), Expect = 1e-20 Identities = 84/97 (87%), Gaps = 3/97 (3%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 10923626 AAAAAAAGTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 10923685 Query 60117 TCACCACTATACTACCGAGGAT---TGAATATATAAC 60150 | |||||||||||||||||||| |||||| ||||| Sbjct 10923686 TGACCACTATACTACCGAGGATTAATGAATAAATAAC 10923722 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 11471285 AAAAAAGTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 11471344 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 11471345 TGACCACTATACTACCGAGGA 11471365 >seq7 Length=16482863 Score = 111 bits (122), Expect = 2e-19 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 60051 TTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110 || || ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| Sbjct 12852948 TTAATTAAAAAAAGTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 12853007 Query 60111 ACATACTCACCACTATACTACCGAGGATTGA 60141 ||||| ||||||||||||||||||| ||| Sbjct 12853008 GGATACTGACCACTATACTACCGAGGACTGA 12853038 Score = 107 bits (118), Expect = 2e-18 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 468445 AAAAAAAGTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 468386 Query 60117 TCACCACTATACTACCGAGGATTG 60140 | ||||||||||||||||||| || Sbjct 468385 TGACCACTATACTACCGAGGACTG 468362 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | |||||| ||||| || | ||| ||||| || || |||||||| | | Sbjct 10794072 CCTCCCCTCAGACGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 10794131 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || |||| || || || ||||||||||| || | ||||| || || | || Sbjct 10794132 AAGGTGCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGG 10794191 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || |||||||||| ||| || ||||| || | | ||| || | || || Sbjct 10794192 ATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAACT 10794251 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| ||||| || || ||||| || ||||||||||| Sbjct 10794252 TCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCAT 10794298 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 13142200 AAAAAAGATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 13142141 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 13142140 TGACCACTATACTACCGAGGA 13142120 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 13148180 AAAAAAACTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 13148239 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 13148240 TGACCACTATACTACCGAGGA 13148260 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | |||||||||||| || | ||| ||||| || ||||||||||| | Sbjct 10792932 CCACCTCGGAGACGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAA 10792991 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| ||||| || || ||||| || || | || || ||||| | || Sbjct 10792992 AGAGTACGGCCGTCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTGGG 10793051 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||| |||| | ||| | || | |||| || | | || || | ||| || Sbjct 10793052 ATACCCTCTTTGT-CTTGAATCTTAGCCTTGACGTTCTCAATTGTATCAGAAGGTTCGAC 10793110 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||||||||| || || || || || || |||||||| Sbjct 10793111 TTCCAGGGTGATGGTTTTGCCAGTCAGAGTTTTAACGAAAATTTGCAT 10793158 >seq8 Length=14581690 Score = 109 bits (120), Expect = 6e-19 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 10559041 GAAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 10558982 Query 60116 CTCACCACTATACTACCGAGGATTGAAT 60143 || ||||||||||||||||||| | ||| Sbjct 10558981 CTGACCACTATACTACCGAGGACTTAAT 10558954 >seq9 Length=16184580 Score = 105 bits (116), Expect = 8e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 11408373 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 11408314 Query 60126 TACTACCGAGGATTGAAT 60143 |||||||||||| || || Sbjct 11408313 TACTACCGAGGACTGTAT 11408296 >seq2 Length=15265516 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 4367965 AAAAAGGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 4367906 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 4367905 TGACCACTATACTACCGAGGA 4367885 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 10114006 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 10114065 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 10114066 TACTACCGAGGA 10114077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571802718446960