Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq5 114 1e-20
seq7 111 2e-19
seq8 109 6e-19
seq9 105 8e-18
seq2 105 8e-18
>seq5
Length=15459558
Score = 114 bits (126), Expect = 1e-20
Identities = 84/97 (87%), Gaps = 3/97 (3%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 10923626 AAAAAAAGTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 10923685
Query 60117 TCACCACTATACTACCGAGGAT---TGAATATATAAC 60150
| |||||||||||||||||||| |||||| |||||
Sbjct 10923686 TGACCACTATACTACCGAGGATTAATGAATAAATAAC 10923722
Score = 111 bits (122), Expect = 2e-19
Identities = 73/81 (90%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 11471285 AAAAAAGTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 11471344
Query 60117 TCACCACTATACTACCGAGGA 60137
| |||||||||||||||||||
Sbjct 11471345 TGACCACTATACTACCGAGGA 11471365
>seq7
Length=16482863
Score = 111 bits (122), Expect = 2e-19
Identities = 79/91 (87%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 60051 TTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110
|| || ||||| ||||| |||| ||||||||||||| |||||||||||||||||||||
Sbjct 12852948 TTAATTAAAAAAAGTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 12853007
Query 60111 ACATACTCACCACTATACTACCGAGGATTGA 60141
||||| ||||||||||||||||||| |||
Sbjct 12853008 GGATACTGACCACTATACTACCGAGGACTGA 12853038
Score = 107 bits (118), Expect = 2e-18
Identities = 74/84 (88%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 468445 AAAAAAAGTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 468386
Query 60117 TCACCACTATACTACCGAGGATTG 60140
| ||||||||||||||||||| ||
Sbjct 468385 TGACCACTATACTACCGAGGACTG 468362
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
||||| || | |||||| ||||| || | ||| ||||| || || |||||||| | |
Sbjct 10794072 CCTCCCCTCAGACGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 10794131
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
| || || |||| || || || ||||||||||| || | ||||| || || | ||
Sbjct 10794132 AAGGTGCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGG 10794191
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| || |||||||||| ||| || ||||| || | | ||| || | || ||
Sbjct 10794192 ATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAACT 10794251
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| | |||||||| ||||| || || ||||| || |||||||||||
Sbjct 10794252 TCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCAT 10794298
Score = 105 bits (116), Expect = 8e-18
Identities = 72/81 (89%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 13142200 AAAAAAGATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 13142141
Query 60117 TCACCACTATACTACCGAGGA 60137
| |||||||||||||||||||
Sbjct 13142140 TGACCACTATACTACCGAGGA 13142120
Score = 105 bits (116), Expect = 8e-18
Identities = 72/81 (89%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 13148180 AAAAAAACTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 13148239
Query 60117 TCACCACTATACTACCGAGGA 60137
| |||||||||||||||||||
Sbjct 13148240 TGACCACTATACTACCGAGGA 13148260
Score = 89.7 bits (98), Expect = 6e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| |||| | |||||||||||| || | ||| ||||| || ||||||||||| |
Sbjct 10792932 CCACCTCGGAGACGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAA 10792991
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||| || |||| ||||| || || ||||| || || | || || ||||| | ||
Sbjct 10792992 AGAGTACGGCCGTCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTGGG 10793051
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135
| | ||| |||| | ||| | || | |||| || | | || || | ||| ||
Sbjct 10793052 ATACCCTCTTTGT-CTTGAATCTTAGCCTTGACGTTCTCAATTGTATCAGAAGGTTCGAC 10793110
Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| | |||||||||||||| || || || || || || ||||||||
Sbjct 10793111 TTCCAGGGTGATGGTTTTGCCAGTCAGAGTTTTAACGAAAATTTGCAT 10793158
>seq8
Length=14581690
Score = 109 bits (120), Expect = 6e-19
Identities = 77/88 (88%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115
|||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||
Sbjct 10559041 GAAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 10558982
Query 60116 CTCACCACTATACTACCGAGGATTGAAT 60143
|| ||||||||||||||||||| | |||
Sbjct 10558981 CTGACCACTATACTACCGAGGACTTAAT 10558954
>seq9
Length=16184580
Score = 105 bits (116), Expect = 8e-18
Identities = 70/78 (90%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 11408373 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 11408314
Query 60126 TACTACCGAGGATTGAAT 60143
|||||||||||| || ||
Sbjct 11408313 TACTACCGAGGACTGTAT 11408296
>seq2
Length=15265516
Score = 105 bits (116), Expect = 8e-18
Identities = 72/81 (89%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 4367965 AAAAAGGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 4367906
Query 60117 TCACCACTATACTACCGAGGA 60137
| |||||||||||||||||||
Sbjct 4367905 TGACCACTATACTACCGAGGA 4367885
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 10114006 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 10114065
Query 60126 TACTACCGAGGA 60137
||||||||||||
Sbjct 10114066 TACTACCGAGGA 10114077
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571802718446960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |