Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq7 111 2e-19 >seq7 Length=16482863 Score = 111 bits (122), Expect = 2e-19 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| || | || ||||| || | ||| ||||| || ||||| ||||| ||| Sbjct 10792932 CCACCTCGGAGACGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAA 10792991 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || || |||| ||||||||||||||| ||||||||||| || || || || Sbjct 10792992 AGAGTACGGCCGTCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTGGG 10793051 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || || ||||| ||||| ||||| ||| ||| ||| Sbjct 10793052 ATACCCTCTTTGTCTTGAATCTTAGCCTTGACGTTCTCAATTGTATCAGAAGGTTCGACT 10793111 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || ||||| ||||| || || | ||||||| ||| |||||||| Sbjct 10793112 TCCAGGGTGATGGTTTTGCCAGTCAGAGTTTTAACGAAAATTTGCAT 10793158 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 ||||| ||||||| || |||||||| |||||||| || || || || | | ||| Sbjct 10792719 AATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGACAGGGTGCGCCCATCT 10792778 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || | |||||| |||||||| ||||| || |||||||| |||||||| ||||||||||| Sbjct 10792779 TCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTATCC 10792838 Query 146186 TG 146187 || Sbjct 10792839 TG 10792840 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| || | ||| | ||| || | ||| | ||| ||||| || ||||| || || || Sbjct 10792475 TCCTCCGCGAAGACGTAAGACTAGATGAAGAGTGGATTCCTTTTGGATATTGTAGTCCGA 10792534 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| || | | ||| || || |||||||| ||||| |||||||||||||| || || || Sbjct 10792535 AAGTGTGCGACCATCTTCCAACTGTTTTCCCGCAAAGATCAATCTTTGCTGGTCTGGGGG 10792594 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| |||||||| Sbjct 10792595 AATACCTTCCTTATCTTG 10792612 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| || | || ||||| || | || |||||||| ||||| || || ||| Sbjct 10793616 CCACCTCGGAGACGCAACACCAAGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCGGAA 10793675 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || || || | |||||||||||| || ||||||||||| || || || || Sbjct 10793676 AGAGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGTGGG 10793735 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 10793736 ATACCTTCCTTGTCTTG 10793752 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | |||||||| || | || ||||| || || || |||||||| Sbjct 10793844 CCACCTCTCAAACGCAATACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGAG 10793903 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| |||| |||||| || ||||| ||||||||||| || || || || Sbjct 10793904 AGGGTACGCCCATCTTCTAGTTGTTTCCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGG 10793963 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 10793964 ATCCCTTCCTTATCCTG 10793980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743507049725440