Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq7 91.5 1e-13
seq4 87.8 1e-12
>seq7
Length=16482863
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| | || |||| |||| ||| | || ||| ||||| ||||||||||| |||
Sbjct 10794300 CCGCCCCTCAATCTCAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAC 10794359
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
| || |||| || | || ||||| ||||| || | || |||||||| |||
Sbjct 10794360 AAAGTGCGTCCGTCTTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGG 10794419
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341
| | |||||||| ||||| ||||| | | | || | ||||| | |||||
Sbjct 10794420 ATACCTTCCTTGTCCTGGATCTTA-GCTTTGACGTTTTCGATGGTATCGGAGGGCTCGAC 10794478
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|||| ||||||||||| || || | ||| ||||| ||||||||||||
Sbjct 10794479 CTCCAAGGTGATGGTTTTACCAGTCAAAGTCTTCACGAAGATCTGCATC 10794527
>seq4
Length=12290766
Score = 87.8 bits (96), Expect = 1e-12
Identities = 138/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||| ||||| |||||||| ||||||| || | || |||| ||| || || || ||
Sbjct 488974 TTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTACCCGCAAA 489033
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316
||| | ||||| || ||| ||| | || |||||||| || ||| ||||| | ||
Sbjct 489034 AATCAAACGCTGTTGATCGGGGGGAATGCCTTCCTTGTCCTGAAT-TTTCGCTTTGACAT 489092
Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376
| || | || | | ||||| || | |||||||| |||||||| ||||||||||
Sbjct 489093 TTTCGATGGTGTCTGAAGGCTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCA 489152
Query 34377 CAAAGATCTGCATCG 34391
| || || |||||||
Sbjct 489153 CGAAAATTTGCATCG 489167
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323063802249920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |