Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq7 91.5 1e-13 seq4 87.8 1e-12 >seq7 Length=16482863 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | || |||| |||| ||| | || ||| ||||| ||||||||||| ||| Sbjct 10794300 CCGCCCCTCAATCTCAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAC 10794359 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || |||| || | || ||||| ||||| || | || |||||||| ||| Sbjct 10794360 AAAGTGCGTCCGTCTTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGG 10794419 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| ||||| ||||| | | | || | ||||| | ||||| Sbjct 10794420 ATACCTTCCTTGTCCTGGATCTTA-GCTTTGACGTTTTCGATGGTATCGGAGGGCTCGAC 10794478 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| ||||||||||| || || | ||| ||||| |||||||||||| Sbjct 10794479 CTCCAAGGTGATGGTTTTACCAGTCAAAGTCTTCACGAAGATCTGCATC 10794527 >seq4 Length=12290766 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||| ||||||| || | || |||| ||| || || || || Sbjct 488974 TTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTACCCGCAAA 489033 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 ||| | ||||| || ||| ||| | || |||||||| || ||| ||||| | || Sbjct 489034 AATCAAACGCTGTTGATCGGGGGGAATGCCTTCCTTGTCCTGAAT-TTTCGCTTTGACAT 489092 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | ||||| || | |||||||| |||||||| |||||||||| Sbjct 489093 TTTCGATGGTGTCTGAAGGCTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCA 489152 Query 34377 CAAAGATCTGCATCG 34391 | || || ||||||| Sbjct 489153 CGAAAATTTGCATCG 489167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323063802249920