Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq5 242 3e-59
>seq5
Length=15459558
Score = 242 bits (268), Expect = 3e-59
Identities = 588/886 (66%), Gaps = 17/886 (2%)
Strand=Plus/Minus
Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003
|| || ||||| | ||| |||| ||||||||||| || || ||||| |||||| |
Sbjct 2625060 TTCTGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTGGAAATAATC 2625001
Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAAT 16063
||| ||||| || ||||| | ||| ||| ||| ||||| ||||| || |||
Sbjct 2625000 GTCATGAAATCGAACGGATTCTGTGAGTTGTAGATTTTCTCGCACCCCAACTCGCCCAAC 2624941
Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123
||||| || ||||||||||| || || || ||| ||| | ||||||||||| || |
Sbjct 2624940 AATCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATTCCAATCATG 2624881
Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATA 16183
| || || | ||||| || || || | || || || || ||||| || ||| ||
Sbjct 2624880 CTGACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCTTGGATAATG 2624821
Query 16184 TCTCTTACTACACTATTTAACGGAGGGTTT----AATAAGTGTTTAAACATTATACAAGC 16239
|| | | | | | ||| ||| || || | ||||| ||||| | ||| ||
Sbjct 2624820 -CTTTGAATCCGTTCTTT---GGACGGCTTCTGCACCAAGTGAGAGAACATCAAACAGGC 2624765
Query 16240 AAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGG 16299
|||||| ||||| | || |||||||| || | || || |||||||| ||||||||
Sbjct 2624764 AAAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGG 2624705
Query 16300 CATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACC 16359
||| || || ||||||| ||| || || | ||||| ||||| ||||| || ||
Sbjct 2624704 CATAAGATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAATCCC 2624645
Query 16360 TTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatcca 16419
||| || |||||||| || || | ||| || || | || || || || | ||||||
Sbjct 2624644 TTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTGCTGTTTATCCA 2624585
Query 16420 ttttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAA 16479
||||| | || || | ||||||||| || |||| || ||||| || ||
Sbjct 2624584 CAGCAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGAACAA 2624525
Query 16480 ATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGA 16539
| | || || | | || |||| || || || || | | || ||||| || ||
Sbjct 2624524 GAACTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTGTACATCTCCGA 2624465
Query 16540 ATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTAC 16599
||| || || || || || || || || || |||||||| | |||||||| | ||| ||
Sbjct 2624464 ATGGATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCGGTCACTTGCAC 2624405
Query 16600 TTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAA 16659
|| | ||||| || | | ||||||||| || ||||| || ||||| |||||
Sbjct 2624404 CTCCTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAGGCTGCGAAAAA 2624345
Query 16660 CGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAA---AGT---TTTAACCAGTC 16713
||||| | ||| ||| || | ||| ||| ||| ||| || ||||||
Sbjct 2624344 TGCAAGAACGTGCGAAATGAAGTAGCGTTC---ATCAGAATTCAGTTTGTTCTTCCAGTC 2624288
Query 16714 AGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTT 16773
|||||||| || ||||| || ||||| |||||||| || || | || | ||
Sbjct 2624287 GTCCAAATCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTCCGCTTGCTT 2624228
Query 16774 ATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACATAC 16819
|| | | ||| ||||| ||| || ||||| || ||| ||
Sbjct 2624227 GTATTTGTCCCAAATGTCGGGGTACTGGATGGGAAAGACCACAAAC 2624182
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462499963125200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |