Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq5 242 3e-59 >seq5 Length=15459558 Score = 242 bits (268), Expect = 3e-59 Identities = 588/886 (66%), Gaps = 17/886 (2%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 || || ||||| | ||| |||| ||||||||||| || || ||||| |||||| | Sbjct 2625060 TTCTGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTGGAAATAATC 2625001 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAAT 16063 ||| ||||| || ||||| | ||| ||| ||| ||||| ||||| || ||| Sbjct 2625000 GTCATGAAATCGAACGGATTCTGTGAGTTGTAGATTTTCTCGCACCCCAACTCGCCCAAC 2624941 Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123 ||||| || ||||||||||| || || || ||| ||| | ||||||||||| || | Sbjct 2624940 AATCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATTCCAATCATG 2624881 Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATA 16183 | || || | ||||| || || || | || || || || ||||| || ||| || Sbjct 2624880 CTGACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCTTGGATAATG 2624821 Query 16184 TCTCTTACTACACTATTTAACGGAGGGTTT----AATAAGTGTTTAAACATTATACAAGC 16239 || | | | | | ||| ||| || || | ||||| ||||| | ||| || Sbjct 2624820 -CTTTGAATCCGTTCTTT---GGACGGCTTCTGCACCAAGTGAGAGAACATCAAACAGGC 2624765 Query 16240 AAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGG 16299 |||||| ||||| | || |||||||| || | || || |||||||| |||||||| Sbjct 2624764 AAAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGG 2624705 Query 16300 CATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACC 16359 ||| || || ||||||| ||| || || | ||||| ||||| ||||| || || Sbjct 2624704 CATAAGATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAATCCC 2624645 Query 16360 TTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatcca 16419 ||| || |||||||| || || | ||| || || | || || || || | |||||| Sbjct 2624644 TTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTGCTGTTTATCCA 2624585 Query 16420 ttttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAA 16479 ||||| | || || | ||||||||| || |||| || ||||| || || Sbjct 2624584 CAGCAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGAACAA 2624525 Query 16480 ATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGA 16539 | | || || | | || |||| || || || || | | || ||||| || || Sbjct 2624524 GAACTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTGTACATCTCCGA 2624465 Query 16540 ATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTAC 16599 ||| || || || || || || || || || |||||||| | |||||||| | ||| || Sbjct 2624464 ATGGATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCGGTCACTTGCAC 2624405 Query 16600 TTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAA 16659 || | ||||| || | | ||||||||| || ||||| || ||||| ||||| Sbjct 2624404 CTCCTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAGGCTGCGAAAAA 2624345 Query 16660 CGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAA---AGT---TTTAACCAGTC 16713 ||||| | ||| ||| || | ||| ||| ||| ||| || |||||| Sbjct 2624344 TGCAAGAACGTGCGAAATGAAGTAGCGTTC---ATCAGAATTCAGTTTGTTCTTCCAGTC 2624288 Query 16714 AGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTT 16773 |||||||| || ||||| || ||||| |||||||| || || | || | || Sbjct 2624287 GTCCAAATCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTCCGCTTGCTT 2624228 Query 16774 ATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACATAC 16819 || | | ||| ||||| ||| || ||||| || ||| || Sbjct 2624227 GTATTTGTCCCAAATGTCGGGGTACTGGATGGGAAAGACCACAAAC 2624182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462499963125200