Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq4 123 2e-23 >seq4 Length=12290766 Score = 123 bits (136), Expect = 2e-23 Identities = 233/343 (68%), Gaps = 0/343 (0%) Strand=Plus/Plus Query 20215 GAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTT 20274 ||||| ||| |||| || || ||||| || || ||| | || ||||| || || || Sbjct 288283 GAGGGCGATCTGGGACCGGTTTATGGTTTCCAGTGGCGCCACTTTGGGGCCGAGTACAAG 288342 Query 20275 GACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTA 20334 | ||| || |||| ||||| | || ||||| ||||||| | | Sbjct 288343 GGGATGCACTGGGATTACGCCAATCAAGGGATTGACCAATTGGCTCATGTTATCGAAACA 288402 Query 20335 ATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTG 20394 ||| | || || ||||| || ||||| || | || || ||||| | ||| | Sbjct 288403 ATTCGTAATAAACCCAACGATAGGAGAATCATAATGTGTGCGTGGAATCCAGTGGATATT 288462 Query 20395 CCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAA 20454 || |||||| | || || ||||| || || |||| || || ||| ||| Sbjct 288463 CCCGAAATGGCCCTCCCGCCTTGTCACTGCCTCGTGCAGTTTTTTGTGGCAAATGGGGAA 288522 Query 20455 TTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATT 20514 ||||||||| |||| ||| | || ||||||||||| ||||| || || ||||||||| Sbjct 288523 TTGTCGTGTTTGTTGTACCAAAGGTCGGCTGATATGGGGCTGGGGGTGCCGTTCAATATT 288582 Query 20515 GCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAG 20557 ||||||||| | || | ||||||||||||||||||||||||| Sbjct 288583 GCAAGTTATTCCTTGTTGACGTATATGATTGCACATGTTACAG 288625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399173870955490