Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq7 113 4e-20
>seq7
Length=16482863
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|| || |||||||| || |||||||| ||||| |||||||| ||||||||||| |
Sbjct 10794300 CCGCCCCTCAATCTCAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAC 10794359
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
| ||| |||| || |||||||| || ||||| ||||| || || ||||| || ||
Sbjct 10794360 AAAGTGCGTCCGTCTTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGG 10794419
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| ||| ||||||||| || || || || | | | | || ||| |||
Sbjct 10794420 ATACCTTCCTTGTCCTGGATCTTAGCTTTGACGTTTTCGATGGTATCGGAGGGCTCGACC 10794479
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| ||| || || || || |||| ||||||||| ||||| |||||
Sbjct 10794480 TCCAAGGTGATGGTTTTACCAGTCAAAGTCTTCACGAAGATCTGCAT 10794526
Score = 105 bits (116), Expect = 5e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
||| || |||| | || |||||||| || ||| |||||||| |||||||| |||
Sbjct 10794071 GCCTCCCCTCAGACGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGA 10794130
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| ||| |||| || |||||||| || ||||| ||||| |||||||| || |||||
Sbjct 10794131 CAAGGTGCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGG 10794190
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| |||||||||||| || || || || | | | | || ||| ||
Sbjct 10794191 GATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAAC 10794250
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| || || |||||||| || || ||||| || |||||||||||
Sbjct 10794251 TTCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCAT 10794298
Score = 104 bits (114), Expect = 2e-17
Identities = 163/232 (70%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||||| | | ||||| ||||| || || || || |||||||||||||||
Sbjct 10793159 GCCACCTCGGAGCCGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGA 10793218
Query 45169 CAG---TTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGG 45225
|| | ||| ||| ||| || ||||| |||||||| ||||||| ||| || || ||
Sbjct 10793219 GAGAGTTCGGCCATCTTCG---AGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGG 10793275
Query 45226 AGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTC 45285
|| | ||||| |||||| |||||| |||||| | | ||||| ||
Sbjct 10793276 GGGAATCCCCTCTTTGTCCTGAATTTTCGCCTTAACGTTTTCGATAGTGTCCGATGGTTC 10793335
Query 45286 CACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| |||| || |||||||| || |||| |||||| || ||||||||||||
Sbjct 10793336 TACTTCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCATG 10793387
Score = 102 bits (112), Expect = 6e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||||| | | || |||||||| || ||| || || || || |||||||||
Sbjct 10793615 GCCACCTCGGAGACGCAACACCAAGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCGGA 10793674
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| || |||| || ||||||||||| ||||| ||||| | |||||||| || ||
Sbjct 10793675 AAGAGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGTGG 10793734
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| ||| |||||||| || || |||||| | | | | | || | || ||
Sbjct 10793735 GATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTATCAGAAGGTTCGAC 10793794
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
||||| ||| || |||||||| ||||| || || || || |||||||||
Sbjct 10793795 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTGACGAAAATTTGCATG 10793843
Score = 100 bits (110), Expect = 2e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184
|| |||||||| || || ||| ||||| |||||||||||| ||| |||| | ||
Sbjct 10793403 AACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGACCATCC 10793462
Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
|||| ||||| |||||||| ||||| | || || || || || | ||||| ||||||
Sbjct 10793463 TCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGAATCCCCTCTTTGTCC 10793522
Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304
|||||| ||| || | | ||||| | || || || | || |||||
Sbjct 10793523 TGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACTTCAAGAGTGATCGTT 10793582
Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| || |||| ||||||||| || |||||||||
Sbjct 10793583 TTTCCAGTCAAAGTCTTCACGAAAATTTGCATG 10793615
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/231 (70%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||||||||| | ||||||||||| || ||| |||||||| |||||||| || |
Sbjct 10793843 GCCACCTCTCAAACGCAATACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATC--T 10793900
Query 45169 CAGTTGG--CGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226
|| || || | || || |||||||| ||||| || ||||| | |||||||| ||
Sbjct 10793901 GAGAGGGTACGCCCATCTTCTAGTTGTTTCCCGGCAAAGATCAATCTTTGTTGGTCTGGT 10793960
Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286
|| | || ||||| ||| ||| || ||| || | | |||| | ||
Sbjct 10793961 GGGATCCCTTCCTTATCCTGAATCTTAGCCTTGACGTTTTCAATCGTGTCGGAAGGTTCG 10794020
Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| |||| ||||| || || || |||| ||||| || ||||| ||||||
Sbjct 10794021 ACTTCCAAAGTAATGGTTTTCCCAGTCAAGGTCTTGACGAAGATCTGCATG 10794071
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395065175213722
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