Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq7 113 4e-20 >seq7 Length=16482863 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || |||||||| || |||||||| ||||| |||||||| ||||||||||| | Sbjct 10794300 CCGCCCCTCAATCTCAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAC 10794359 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| |||| || |||||||| || ||||| ||||| || || ||||| || || Sbjct 10794360 AAAGTGCGTCCGTCTTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGG 10794419 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||||||| || || || || | | | | || ||| ||| Sbjct 10794420 ATACCTTCCTTGTCCTGGATCTTAGCTTTGACGTTTTCGATGGTATCGGAGGGCTCGACC 10794479 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || || || || |||| ||||||||| ||||| ||||| Sbjct 10794480 TCCAAGGTGATGGTTTTACCAGTCAAAGTCTTCACGAAGATCTGCAT 10794526 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||| || |||| | || |||||||| || ||| |||||||| |||||||| ||| Sbjct 10794071 GCCTCCCCTCAGACGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGA 10794130 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| |||| || |||||||| || ||||| ||||| |||||||| || ||||| Sbjct 10794131 CAAGGTGCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGG 10794190 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || || || || | | | | || ||| || Sbjct 10794191 GATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAAC 10794250 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || |||||||| || || ||||| || ||||||||||| Sbjct 10794251 TTCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCAT 10794298 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| | | ||||| ||||| || || || || ||||||||||||||| Sbjct 10793159 GCCACCTCGGAGCCGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGA 10793218 Query 45169 CAG---TTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGG 45225 || | ||| ||| ||| || ||||| |||||||| ||||||| ||| || || || Sbjct 10793219 GAGAGTTCGGCCATCTTCG---AGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGG 10793275 Query 45226 AGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTC 45285 || | ||||| |||||| |||||| |||||| | | ||||| || Sbjct 10793276 GGGAATCCCCTCTTTGTCCTGAATTTTCGCCTTAACGTTTTCGATAGTGTCCGATGGTTC 10793335 Query 45286 CACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| || |||||||| || |||| |||||| || |||||||||||| Sbjct 10793336 TACTTCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCATG 10793387 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| | | || |||||||| || ||| || || || || ||||||||| Sbjct 10793615 GCCACCTCGGAGACGCAACACCAAGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCGGA 10793674 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || |||| || ||||||||||| ||||| ||||| | |||||||| || || Sbjct 10793675 AAGAGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGTGG 10793734 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||| |||||||| || || |||||| | | | | | || | || || Sbjct 10793735 GATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTATCAGAAGGTTCGAC 10793794 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| ||| || |||||||| ||||| || || || || ||||||||| Sbjct 10793795 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTGACGAAAATTTGCATG 10793843 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||| ||||| |||||||||||| ||| |||| | || Sbjct 10793403 AACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGACCATCC 10793462 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||||| |||||||| ||||| | || || || || || | ||||| |||||| Sbjct 10793463 TCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGAATCCCCTCTTTGTCC 10793522 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 |||||| ||| || | | ||||| | || || || | || ||||| Sbjct 10793523 TGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACTTCAAGAGTGATCGTT 10793582 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || |||| ||||||||| || ||||||||| Sbjct 10793583 TTTCCAGTCAAAGTCTTCACGAAAATTTGCATG 10793615 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||||||| | ||||||||||| || ||| |||||||| |||||||| || | Sbjct 10793843 GCCACCTCTCAAACGCAATACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATC--T 10793900 Query 45169 CAGTTGG--CGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 || || || | || || |||||||| ||||| || ||||| | |||||||| || Sbjct 10793901 GAGAGGGTACGCCCATCTTCTAGTTGTTTCCCGGCAAAGATCAATCTTTGTTGGTCTGGT 10793960 Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286 || | || ||||| ||| ||| || ||| || | | |||| | || Sbjct 10793961 GGGATCCCTTCCTTATCCTGAATCTTAGCCTTGACGTTTTCAATCGTGTCGGAAGGTTCG 10794020 Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| ||||| || || || |||| ||||| || ||||| |||||| Sbjct 10794021 ACTTCCAAAGTAATGGTTTTCCCAGTCAAGGTCTTGACGAAGATCTGCATG 10794071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395065175213722