Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq7 109 4e-19
seq4 100 2e-16
>seq7
Length=16482863
Score = 109 bits (120), Expect = 4e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 18098 TCCTCCCCGTAGTC-TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGG 18156
|||||| || || | |||| || | ||||| || ||||| ||||| || |||||||| |
Sbjct 10792475 TCCTCCGCGAAGACGTAAG-ACTAGATGAAGAGTGGATTCCTTTTGGATATTGTAGTCCG 10792533
Query 18157 CCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGG 18216
| ||| || ||||||||| ||||| |||||| |||| | |||||| || || ||
Sbjct 10792534 AAAGTGTGCGACCATCTTCCAACTGTTTTCCCGCAAAGATCAATCTTTGCTGGTCTGGGG 10792593
Query 18217 GCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276
| | ||||||||||| ||||| ||| || | | ||| ||||| |||||
Sbjct 10792594 GAATACCTTCCTTATCTTGAATTTTGGCCTTCACATTTTCAATCGTGTCCGATGGCTCAA 10792653
Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||| | || || |||| || ||||| || || || |||||||||||
Sbjct 10792654 CTTCCAACGTAATTGTTTTCCCAGTCAACGTCTTCACGAAAATTTGCAT 10792702
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176
|||| ||| || || || ||||| || ||||||||||||| | ||| || ||| |||
Sbjct 10793406 ACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGACCATCCTCC 10793465
Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236
|| |||||||| || | || | |||||| ||||| ||| | || || || || |
Sbjct 10793466 AACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGAATCCCCTCTTTGTCCTGA 10793525
Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296
|||| ||| || | | | | ||||| || ||| ||||| ||||| ||||
Sbjct 10793526 ATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACTTCAAGAGTGATCGTTTTT 10793585
Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| ||||| || || || |||||||||||
Sbjct 10793586 CCAGTCAAAGTCTTCACGAAAATTTGCAT 10793614
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175
||| | ||| ||||||||||||||||||||||||||||||| | ||| | ||||||
Sbjct 10793177 TACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCATCTTC 10793236
Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235
| |||||||| || |||| | || || ||||| ||| | || || || ||
Sbjct 10793237 GAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGGAATCCCCTCTTTGTCCTG 10793296
Query 18236 AATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295
||||| ||| || | | | | |||||| || || ||| | ||||| | ||
Sbjct 10793297 AATTTTCGCCTTAACGTTTTCGATAGTGTCCGATGGTTCTACTTCCAAAGTGATCGTCTT 10793356
Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| ||||| || ||||| || ||||||||
Sbjct 10793357 CCCAGTCAAAGTCTTTACGAAGATTTGCAT 10793386
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175
||||| |||||| || ||||| || || |||||||| || | | || | ||||||
Sbjct 10793861 TACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGCCCATCTTC 10793920
Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235
| |||||| || ||| |||| | ||||||||| || || | |||||||||||
Sbjct 10793921 TAGTTGTTTCCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATCCCTTCCTTATCCTG 10793980
Query 18236 AATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295
||| | |||||| | | ||| ||||| || ||| ||| | || ||| ||||
Sbjct 10793981 AATCTTAGCCTTGACGTTTTCAATCGTGTCGGAAGGTTCGACTTCCAAAGTAATGGTTTT 10794040
Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| ||||| || || || || || |||||
Sbjct 10794041 CCCAGTCAAGGTCTTGACGAAGATCTGCAT 10794070
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||| || || | | ||| | || || ||||||||||||||||| || ||||| | |
Sbjct 10792704 CCTCCTCGCAGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGAC 10792763
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | |||||| | ||||||||| ||| |||| | || || ||||| ||
Sbjct 10792764 AGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 10792823
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| |||||| ||||| |||| | || || || | ||| ||||| ||| ||
Sbjct 10792824 ATGCCTTCTTTATCCTGGATTT-TAGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTAC 10792882
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||| | ||||| | || || ||||| || || || |||||||||||
Sbjct 10792883 TTCCAAAGTGATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCAT 10792930
>seq4
Length=12290766
Score = 100 bits (110), Expect = 2e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
||||| || ||||| || || |||||||| |||| || || | ||| |||| |||
Sbjct 488963 TGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGT 489022
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
|| |||||| | || | | |||||||| ||| | ||||||||| || ||||| |
Sbjct 489023 TTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGAATGCCTTCCTTGTCCTGAATTT-T 489081
Query 18243 TGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301
|||| ||| | | | | ||||| |||||| |||| |||||| | ||||||||
Sbjct 489082 CGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACCTCAAGAGTGATGGTCTTGCCGGT 489141
Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325
|| ||||| || |||||||||||
Sbjct 489142 CAGAGTTTTCACGAAAATTTGCAT 489165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379334374383090
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |