Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq7 109 4e-19 seq4 100 2e-16 >seq7 Length=16482863 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTC-TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGG 18156 |||||| || || | |||| || | ||||| || ||||| ||||| || |||||||| | Sbjct 10792475 TCCTCCGCGAAGACGTAAG-ACTAGATGAAGAGTGGATTCCTTTTGGATATTGTAGTCCG 10792533 Query 18157 CCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGG 18216 | ||| || ||||||||| ||||| |||||| |||| | |||||| || || || Sbjct 10792534 AAAGTGTGCGACCATCTTCCAACTGTTTTCCCGCAAAGATCAATCTTTGCTGGTCTGGGG 10792593 Query 18217 GCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | | ||||||||||| ||||| ||| || | | ||| ||||| ||||| Sbjct 10792594 GAATACCTTCCTTATCTTGAATTTTGGCCTTCACATTTTCAATCGTGTCCGATGGCTCAA 10792653 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || |||| || ||||| || || || ||||||||||| Sbjct 10792654 CTTCCAACGTAATTGTTTTCCCAGTCAACGTCTTCACGAAAATTTGCAT 10792702 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || || || ||||| || ||||||||||||| | ||| || ||| ||| Sbjct 10793406 ACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGACCATCCTCC 10793465 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 || |||||||| || | || | |||||| ||||| ||| | || || || || | Sbjct 10793466 AACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGAATCCCCTCTTTGTCCTGA 10793525 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| ||| || | | | | ||||| || ||| ||||| ||||| |||| Sbjct 10793526 ATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACTTCAAGAGTGATCGTTTTT 10793585 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| || || || ||||||||||| Sbjct 10793586 CCAGTCAAAGTCTTCACGAAAATTTGCAT 10793614 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||| | ||| ||||||||||||||||||||||||||||||| | ||| | |||||| Sbjct 10793177 TACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCATCTTC 10793236 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 | |||||||| || |||| | || || ||||| ||| | || || || || Sbjct 10793237 GAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGGAATCCCCTCTTTGTCCTG 10793296 Query 18236 AATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 ||||| ||| || | | | | |||||| || || ||| | ||||| | || Sbjct 10793297 AATTTTCGCCTTAACGTTTTCGATAGTGTCCGATGGTTCTACTTCCAAAGTGATCGTCTT 10793356 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| || ||||| || |||||||| Sbjct 10793357 CCCAGTCAAAGTCTTTACGAAGATTTGCAT 10793386 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| |||||| || ||||| || || |||||||| || | | || | |||||| Sbjct 10793861 TACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGCCCATCTTC 10793920 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 | |||||| || ||| |||| | ||||||||| || || | ||||||||||| Sbjct 10793921 TAGTTGTTTCCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATCCCTTCCTTATCCTG 10793980 Query 18236 AATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 ||| | |||||| | | ||| ||||| || ||| ||| | || ||| |||| Sbjct 10793981 AATCTTAGCCTTGACGTTTTCAATCGTGTCGGAAGGTTCGACTTCCAAAGTAATGGTTTT 10794040 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| || || || || || ||||| Sbjct 10794041 CCCAGTCAAGGTCTTGACGAAGATCTGCAT 10794070 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | | ||| | || || ||||||||||||||||| || ||||| | | Sbjct 10792704 CCTCCTCGCAGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGAC 10792763 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| | ||||||||| ||| |||| | || || ||||| || Sbjct 10792764 AGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 10792823 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||| ||||| |||| | || || || | ||| ||||| ||| || Sbjct 10792824 ATGCCTTCTTTATCCTGGATTT-TAGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTAC 10792882 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||| | || || ||||| || || || ||||||||||| Sbjct 10792883 TTCCAAAGTGATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCAT 10792930 >seq4 Length=12290766 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || ||||| || || |||||||| |||| || || | ||| |||| ||| Sbjct 488963 TGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGT 489022 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || |||||| | || | | |||||||| ||| | ||||||||| || ||||| | Sbjct 489023 TTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGAATGCCTTCCTTGTCCTGAATTT-T 489081 Query 18243 TGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 |||| ||| | | | | ||||| |||||| |||| |||||| | |||||||| Sbjct 489082 CGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACCTCAAGAGTGATGGTCTTGCCGGT 489141 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 || ||||| || ||||||||||| Sbjct 489142 CAGAGTTTTCACGAAAATTTGCAT 489165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379334374383090