Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq4 107 4e-18 >seq4 Length=12290766 Score = 107 bits (118), Expect = 4e-18 Identities = 355/541 (66%), Gaps = 26/541 (5%) Strand=Plus/Plus Query 35168 GGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGACACTATTCCA 35227 || ||| | || ||||||||| |||||||| | | ||| || || ||| | | |||| Sbjct 288058 GGCACTTTTTCGATTTTTGGAGCCCAAATGCGCTACTCCCTCCGCGACAATG-TCTTCCC 288116 Query 35228 GTTCTCACTACCAAGAAAATT---TTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTC 35284 ||| |||| |||| | |||||| | ||||| || || || | |||||| Sbjct 288117 --TCTGTTGACCACGAAACGTGTGTTCTGGCGCGGAGTCGTTGAGGAGTTGCTTTGGTTC 288174 Query 35285 ATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATACACATCTGGAACGCT 35344 |||| ||| || |||| || ||||| |||| || | || || ||| | || Sbjct 288175 ATCAAAGGCTCAACGAACGCAAACGAATTAAAAGAGAAAAATGTGCATATTTGGGATGCG 288234 Query 35345 AATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTG 35404 || | | || || ||| | || | ||| | | || | | ||||| ||| || Sbjct 288235 AACAGCACACGAGAGTTTCTCGATTCTGTGGGGCTCAATGAGCGCGAGGAGGGCGATCTG 288294 Query 35405 GGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATAT-----GATAC-CTGT 35458 ||||| || || || ||||| ||||| || ||||| || || || ||| | ||| Sbjct 288295 GGACCGGTTTATGGTTTCCAGTGGCGCCACTTTGGGGCCGAGTACAAGGGGATGCACTGG 288354 Query 35459 TCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGA 35518 || || || ||||| ||||| |||||||| || | | | || | | Sbjct 288355 GATTACGCCAATC-----AAGGG-ATTGACCAATTGGCTCATGTTATCGAAACAATTCGT 288408 Query 35519 GAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTT 35578 | || || | ||||| || || || ||| || |||||||| ||||| ||| | Sbjct 288409 AATAAACCCAACGATAGGAGAATCATAATGTGTGCGTGGAATCCAGTGGATATTCCCGAA 288468 Query 35579 ATGGCTCTTCCTCCATGCCACATGACTGCT-CAATTTTATGTGGCTAATGGAGAATTGTC 35637 ||||| || || || || ||| || || | || |||| |||||| ||||| |||||||| Sbjct 288469 ATGGCCCTCCCGCCTTGTCAC-TGCCTCGTGCAGTTTTTTGTGGCAAATGGGGAATTGTC 288527 Query 35638 GTGCCAGTTGTATCAGCGAAG--CGG-AGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 ||| |||||| || ||| ||| ||| | ||| |||| ||||| ||||||||||| Sbjct 288528 GTGTTTGTTGTACCA---AAGGTCGGCTGATATGGGGCTGGGGGTGCCGTTCAATATTGC 288584 Query 35695 A 35695 | Sbjct 288585 A 288585 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 94873 AGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCA 94932 || ||||| ||||| ||||||||| || |||| || || ||||| || || Sbjct 1758022 AGAAAGCAGGAGGAGAGTTGGGGTTTGGGTGTTGCAGCTGAGAAGAGTGTAGGACTGGCG 1757963 Query 94933 TGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGAT 94992 || || || || | |||||| | || ||||| ||| | || | ||||||||| Sbjct 1757962 TGTGTGAAGTATTTTTCTGACATGTAGTTGTAAGTTTCGATGGCTGAGTCGATGTCTGAG 1757903 Query 94993 CCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 ||||| ||||||||||| || ||||| | ||||| || ||||||||||| Sbjct 1757902 CCGTGGATGCCGACAGCGACGCGCATTAGCATGTGTTGGGGGCGCTCAAC 1757853 Score = 84.2 bits (92), Expect = 4e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 94939 AAATAGTGCCTCG-ACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTG 94997 ||||| | ||||| ||||| || || ||||| ||| | || | ||||||| ||||| Sbjct 1761388 AAATA-TCCCTCGGACATGTAATTGTACGTTTCGATGGCTGAGTCGATGTCTTCGCCGTG 1761330 Query 94998 AATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 |||||||||||||||||||| | ||||| ||| |||||||| || Sbjct 1761329 GATGCCGACAGCCACACGCATTAGCATGTGCTGGGGGCGCTCTAC 1761285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989557602228310