Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq4 343 2e-89
seq5 237 2e-57
>seq4
Length=12290766
Score = 343 bits (380), Expect = 2e-89
Identities = 1215/1888 (64%), Gaps = 49/1888 (3%)
Strand=Plus/Minus
Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096
|| |||| |||||||||||||||| | || |||||||| | || ||||||||| ||
Sbjct 1759639 TTATCCACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAATAGTACATCCCT 1759580
Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA----ATAACT 62152
|| |||| ||| | ||| ||||| |||||||| | || || |||| |
Sbjct 1759579 GTCTTTAAACCCTTATCCCACCCGTAGAAATGCAT----GGAAGACATGACCCCATAATT 1759524
Query 62153 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 62212
||| | || ||||| |||||||| || ||||| || || || || || || || || ||
Sbjct 1759523 CGGGGCCGCAATATGAATATTCATCGACTGACTCTGGTCAATAAACGCGCCTCTATCAGC 1759464
Query 62213 AGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 62272
||||| | || || || || | ||| ||||| | |||||||| | | | || |
Sbjct 1759463 CGCCATATCAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTTGTTTCAA 1759404
Query 62273 ATCTTCTGGAA-----GGTTTGTATTCTGAATGGATCCACCATCTACCATAATCCTATTC 62327
||| || |||| || ||| || |||| || ||| || | |||||| ||||
Sbjct 1759403 ATCGTCGGGAATCCCCGGAATGTTTT--GAATCGAACCATAATTCGCAATAATCTGATTC 1759346
Query 62328 TTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACT 62387
|| ||| ||| | ||| | ||||| || ||| | | || || ||| | || ||
Sbjct 1759345 TTCATCGTATCGTCCCAAAGCCCCCTCTCAGTCAAATCCTTCAGCAGGTGCTGATTCACG 1759286
Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447
||||| || || |||||||| || | || || |||||| || |||||||| |
Sbjct 1759285 ACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTACGGTTCGGTC 1759226
Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507
|| |||||||| ||||||||||| ||||| || || || ||||| || |||| | ||
Sbjct 1759225 GATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAAAAGTAGC 1759166
Query 62508 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCC 62567
||| | || ||||||| | |||||| | ||| | || ||||| ||| | ||
Sbjct 1759165 GAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCCACAAATTT 1759106
Query 62568 GACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACA 62627
| || || || || | | ||| | |||| | || ||| ||
Sbjct 1759105 GTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGGTGACCCTTCA 1759046
Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687
|| || ||||| || || | ||| || || |||| ||||| ||||| || || ||||||
Sbjct 1759045 TAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGGCGCCGTAA 1758986
Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747
|||| ||||| || || | | ||||| ||| || |||||||||||||| || |
Sbjct 1758985 TAAAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGGGCTATCAAAAGG--CA 1758928
Query 62748 TT--TAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805
|| | |||||| ||||| || || | || ||||| ||||| || | || || || |
Sbjct 1758927 TTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGGCCTGTGGC 1758868
Query 62806 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 62865
| ||| || | || ||||| | |||||| ||||| | ||| || | ||| || |
Sbjct 1758867 GCAGATTCGACTTACGCGCCTCTGGCAAAGGATAGTAATTCAGATCAATGACTTTGTTCA 1758808
Query 62866 GATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC-AAATCGCCCAT-- 62922
||| | | | |||||| | ||||||| ||| ||| || | ||| | |
Sbjct 1758807 AATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTTAAAGTCGTAGCCGCTCCTGT 1758748
Query 62923 ---CTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAG 62979
|| | || |||||||| | || | || |||| ||||| ||||| | || | |
Sbjct 1758747 CCGCTTTCACGAACATGTTTACGGCGATTGAGGCCAAGTTACAGACGGCGATTTCGTCGG 1758688
Query 62980 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTT 63039
| | | | | ||| || ||||| | ||| || | | ||||||| ||||||||||
Sbjct 1758687 GTGATGTAAACTCGACTATTTCCGTGCATAAATTGCTGCTCCTGATAGTGCCTAAATTTT 1758628
Query 63040 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 63099
|||| || || || ||||||| || || || || || ||| | || || ||||| || |
Sbjct 1758627 GTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATGTAAGGGGTGCCAGTCTCCA 1758568
Query 63100 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-CTTTATTATAGATTTGTATCTC 63158
||| || | ||| || ||| ||| | || || | | | | | || |
Sbjct 1758567 CCTGGGAGACGCAAATAGCGCGCCAAACGTCCCGCGCTGGTAACTGTCTA-ACATAGCGA 1758509
Query 63159 CTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT 63218
| || | |||||| |||||| ||||||||| || |||||| || | | |
Sbjct 1758508 CCGTCAGTCTCGTATTTTTCGTACAATTTTTCGAACTCTTCGCCCCAACAATCGGCAAGG 1758449
Query 63219 CTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63278
| || | | | |||||||||| ||||| | |||| | ||||| || |||
Sbjct 1758448 CCTGGTGACTGGTGTGGACACATCAGGGACCATTTCTCGTCGTTTTTCACCCGGCGCATG 1758389
Query 63279 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCT 63338
|| | ||||| |||| | ||| | || | || | || || | | ||| || ||
Sbjct 1758388 AACAAGTCAGGCGTCCACAAAGCGAAGAACAAGTCGCGTGCCCTTAGCTGCTCCTTCCCC 1758329
Query 63339 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63398
|| || || || | | | || ||| |||||| | |||||| || || | ||| ||
Sbjct 1758328 GTGTTTTTCTTCAAGTTTAAAAAATCCAAAATATCGGCATGCCAAGGCTCGAGGTAAATA 1758269
Query 63399 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63458
|| | | || || | |||||| || || || || | ||| | |||| ||| ||| ||
Sbjct 1758268 GCGCAAGCCCCCGGTCTTTTGTTCCCCCCTTGGTCCACGTAGCGCGCGGAGTTGTTAAAA 1758209
Query 63459 ACTCTCAACATTGGAATAATACCGTTTGATATACCATT---GGTACCGGAGATA-TAGCC 63514
|| | ||| | || | ||| |||| ||| | | || ||| |||| | | | | |
Sbjct 1758208 ACGCGCAAAACGGGCACAATCCCGTCTGAGA---CTTTGGGGGTGCCGGCCAAAGTGGTC 1758152
Query 63515 -----------TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 63563
|| |||| || | || ||| | |||| || |||||| ||
Sbjct 1758151 CGAAAGGTGGTGCCTTTGGCCCGTAAGTTGTGAATACTGACGCCTAGACCGCCTGCCGTT 1758092
Query 63564 TTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATC 63623
|| || || | || ||| | | || | | ||||| || | | || |||
Sbjct 1758091 TTGGAAATCATGGCACATTGGGTCAAACAGCGCGAAATGCCCTCGAGATTGTCCTCGGGG 1758032
Query 63624 A-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGT 63682
| |||| | ||||| ||| || | |||| | | ||| | || || | ||
Sbjct 1758031 AGAGTTACG-AGAAAGCAGGAGGAGAGTTGGGGTTTGGGTGTTGCAGCTGAGAAGAGTGT 1757973
Query 63683 AGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGT 63741
|||| ||||| || || ||||||| || | |||| ||||| || || || |||||||
Sbjct 1757972 AGGACTGGCGTGTGTGAAGTATTTTTCTGACATGTAG-TTGTAAGTTTCGATGGCTGAGT 1757914
Query 63742 CTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 63801
| || || | || || || || ||||| ||||||| |||||| || || | ||||
Sbjct 1757913 CGATGTCTGAGCCGTGGATGCCGACAGCGACGCGCATTAGCATGTGTTGGGGGCGCTCAA 1757854
Query 63802 CAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63861
| |||||| ||| ||||| | ||||||||| || | ||||| ||||| || || |
Sbjct 1757853 CGATTTTGCCGTTGATTTTAAGCAAGTAGGAACGCTCGAGGGTTTTGAAACCGAAGTAAT 1757794
Query 63862 TGTATGAAAAGTCTCGTTCGTAAATAAT 63889
|||| || || || || ||||| || ||
Sbjct 1757793 TGTAAGAGAAATCGCGATCGTAGATTAT 1757766
>seq5
Length=15459558
Score = 237 bits (262), Expect = 2e-57
Identities = 614/930 (66%), Gaps = 13/930 (1%)
Strand=Plus/Minus
Query 33234 CTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAGACATAACTCCCATTTTT 33293
||||||||||| | ||||| | | | | | || | | || | ||||| | ||
Sbjct 2625117 CTTTAAAAGTCCAAATCTAGATGGTACTCCTCGGTTTGCTCACACGTGACTCCGCTCTTC 2625058
Query 33294 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 33353
|||||||| ||||| || || || ||||| || || ||||| || ||| | |
Sbjct 2625057 TGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTGGAAATAATCGTC 2624998
Query 33354 ATGAAATCAAACGGATTG-GTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAA 33412
|||||||| |||||||| || | ||||| ||||| | | ||||| || | |||
Sbjct 2624997 ATGAAATCGAACGGATTCTGTGAG-TTGTAGATTTTCTCGCACCCCAACTCGCCCAACAA 2624939
Query 33413 TCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 33472
||| || || || ||||| || ||| ||||| | || |||||||| || | |
Sbjct 2624938 TCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATTCCAATCATGCT 2624879
Query 33473 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAA 33532
||||| | ||| |||| | ||||| | || || ||||| | | |||||
Sbjct 2624878 GACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCTTGGATAATGCT 2624819
Query 33533 TCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATC 33592
| || ||||| ||| || | || || ||||||||||| || |||||
Sbjct 2624818 TTGAATCCGTTCTTTGGACGGCTTCTGCACCAAGTGAGAGAACATCAAACAGGCAAAATC 2624759
Query 33593 GCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAG 33652
||| || || |||||||| || ||| | ||| || ||||| ||||| || ||||| ||
Sbjct 2624758 GCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGGCATAAG 2624699
Query 33653 GCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTAC 33712
|||||||||||||| || || ||||| || || || ||||| || ||||| ||
Sbjct 2624698 ATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAATCCCTTCGAC 2624639
Query 33713 TGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-----TATCCACTTT 33767
|| ||||| || | | || || ||| || | ||| || || |||||||
Sbjct 2624638 GGCGGCAAACGCCACGATTCGTTCGCCAAAA--GTCGCGTTCTTGCTGTTTATCCACAGC 2624581
Query 33768 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 33827
||||| ||||||||||| || ||||| |||| ||| || || ||||| || | |
Sbjct 2624580 AAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGAACAAGAAC 2624521
Query 33828 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 33887
| || || | || || || || |||||||| | || ||||| ||||||||
Sbjct 2624520 TCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTGTACATCTCCGAATGG 2624461
Query 33888 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947
||||||||||| || || || || ||||| || || | ||| ||||| | ||||| ||
Sbjct 2624460 ATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCGGTCACTTGCACCTCC 2624401
Query 33948 GTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCC 34007
| || | || | | ||||| || || ||||| ||| |||||| ||||| ||
Sbjct 2624400 TGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAGGCTGCGAAAAATGCA 2624341
Query 34008 AATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCCAATCATTGATA 34064
| || || || || || ||| || | | ||| || ||||| || | | |
Sbjct 2624340 AGAACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTTGTTCTTCCAGTCGTCCAAA 2624281
Query 34065 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 34124
||||| || | ||| |||||||| |||||||| || || || || | || || |
Sbjct 2624280 TCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTCCGCTTGCTTGTATTTG 2624221
Query 34125 TTCCAGATGTCATGATATTGGATTGGGAAA 34154
| ||| ||||| | || |||| |||||||
Sbjct 2624220 TCCCAAATGTCGGGGTACTGGA-TGGGAAA 2624192
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629801208996960
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