Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4 203 3e-47 >seq4 Length=12290766 Score = 203 bits (224), Expect = 3e-47 Identities = 575/873 (66%), Gaps = 13/873 (1%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || |||||||||| || ||||| | |||| ||| || || | ||| ||||| || || Sbjct 1759636 TCCACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAATAGTACATCCCTGTC 1759577 Query 36850 TTTAGCCCCA-ATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATT 36908 |||| ||| ||| ||| ||||| |||||||| | || | || | || Sbjct 1759576 TTTAAACCCTTATC-CCACCCGTAGAAATGCATGGAAGACATGACCCCATAATTCGGGGC 1759518 Query 36909 ATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCAT 36968 | |||| || |||| || ||||| || || |||||||| ||||| || || ||||| Sbjct 1759517 CGCAATATGAATATTCATCGACTGACTCTGGTCAATAAACGCGCCTCTATCAGCCGCCAT 1759458 Query 36969 TTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATC 37028 || | |||| ||| || || |||||||| || |||||||| | |||||| | || || Sbjct 1759457 ATCAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTTGTTTCAAATCGTC 1759398 Query 37029 TGGTAAATCTA---AATGTT--GAATAGAACCATTATGTAACACAATTGTATTCTTTATG 37083 || |||| |||||| |||| ||||||| || | ||| |||||| || Sbjct 1759397 GGG--AATCCCCGGAATGTTTTGAATCGAACCATAATTCGCAATAATCTGATTCTTCATC 1759340 Query 37084 TCATTATTCCACATATTTCTACTTATT-AGTTCTCTCAATAGGTGTGGATTTACAACCTG 37142 || | ||| | || || | | | || ||| ||||| |||| || || || Sbjct 1759339 GTATCGTCCCAAAGCCCCCT-CTCAGTCAAATCCTTCAGCAGGTGCTGATTCACGACTTG 1759281 Query 37143 AAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTC 37202 ||| || ||||| || || | || ||| ||||| ||| || ||||| | || || Sbjct 1759280 AAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTACGGTTCGGTCGATTC 1759221 Query 37203 ATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATT 37262 |||||||| || ||||| | || || || || |||||||| || | || || ||| Sbjct 1759220 ATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAAAAGTAGCGAATT 1759161 Query 37263 TCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322 | | || | | | ||| | ||||| | || ||||||||| |||| ||| || Sbjct 1759160 GCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCCACAAATTTGTAGG 1759101 Query 37323 GTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGT 37382 | |||||| || || || | | ||||| ||| | || || | | ||| || Sbjct 1759100 AGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGGTGACCCTTCATAAGT 1759041 Query 37383 CTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATAT 37442 |||||| || ||||| ||| || ||||||||||||| || | ||| | ||||| | Sbjct 1759040 CTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGGCGCCGTAATAAAG 1758981 Query 37443 TGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATC-GAATGCATAGCCCA 37501 |||||||||||||| |||| ||| || || |||||| || |||| | || Sbjct 1758980 CGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGGGCTATCAAAAGGCAT-TCGCA 1758922 Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561 | || ||| ||||||||| |||||||| || || || | || || || | || Sbjct 1758921 GGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGGCCTGTGGCGCAGAT 1758862 Query 37562 TAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTT 37621 | || || || ||| || ||||| ||||| | ||| || | ||| || | ||| | Sbjct 1758861 TCGACTTACGCGCCTCTGGCAAAGGATAGTAATTCAGATCAATGACTTTGTTCAAATTCT 1758802 Query 37622 TAACTAGTATTTTCGTAATTATTCTCAACTTGT 37654 | | | | ||| || ||| ||||||||| Sbjct 1758801 TTGCCACAACTTTGGTGATTTCCTTCAACTTGT 1758769 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 36823 TTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCT-CCATCCGTAAAAATGCAT 36881 || ||||||| || |||||| |||||||| || || ||| ||| || || |||||||| Sbjct 1763020 TTCGTTCTCAAATTATACATCCCAGTTTTGAGACCTT-TCTGCCAACCATAGAAATGCAT 1762962 Query 36882 ACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATC 36941 | || ||||| | ||| | |||| | |||| | ||| ||||| || Sbjct 1762961 CGACGACATAACCGCGTAACTTGGAGCCCCAATATGAACATTCATCGCTTGGCTTTGGTC 1762902 Query 36942 TATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAAC 37001 |||||||| || | |||||||||||||| | || |||||| | |||||||| || Sbjct 1762901 AATAAACGCCCCCCGATCGGCTGCCATTTCAATAACGATTTTTTGCGGAATCTCCCAGAC 1762842 Query 37002 CGTTTTATATAT 37013 |||||||| || Sbjct 1762841 TGTTTTATAGAT 1762830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468512606642080