Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq4 203 3e-47
>seq4
Length=12290766
Score = 203 bits (224), Expect = 3e-47
Identities = 575/873 (66%), Gaps = 13/873 (1%)
Strand=Plus/Minus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
|| |||||||||| || ||||| | |||| ||| || || | ||| ||||| || ||
Sbjct 1759636 TCCACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAATAGTACATCCCTGTC 1759577
Query 36850 TTTAGCCCCA-ATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATT 36908
|||| ||| ||| ||| ||||| |||||||| | || | || | ||
Sbjct 1759576 TTTAAACCCTTATC-CCACCCGTAGAAATGCATGGAAGACATGACCCCATAATTCGGGGC 1759518
Query 36909 ATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCAT 36968
| |||| || |||| || ||||| || || |||||||| ||||| || || |||||
Sbjct 1759517 CGCAATATGAATATTCATCGACTGACTCTGGTCAATAAACGCGCCTCTATCAGCCGCCAT 1759458
Query 36969 TTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATC 37028
|| | |||| ||| || || |||||||| || |||||||| | |||||| | || ||
Sbjct 1759457 ATCAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTTGTTTCAAATCGTC 1759398
Query 37029 TGGTAAATCTA---AATGTT--GAATAGAACCATTATGTAACACAATTGTATTCTTTATG 37083
|| |||| |||||| |||| ||||||| || | ||| |||||| ||
Sbjct 1759397 GGG--AATCCCCGGAATGTTTTGAATCGAACCATAATTCGCAATAATCTGATTCTTCATC 1759340
Query 37084 TCATTATTCCACATATTTCTACTTATT-AGTTCTCTCAATAGGTGTGGATTTACAACCTG 37142
|| | ||| | || || | | | || ||| ||||| |||| || || ||
Sbjct 1759339 GTATCGTCCCAAAGCCCCCT-CTCAGTCAAATCCTTCAGCAGGTGCTGATTCACGACTTG 1759281
Query 37143 AAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTC 37202
||| || ||||| || || | || ||| ||||| ||| || ||||| | || ||
Sbjct 1759280 AAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTACGGTTCGGTCGATTC 1759221
Query 37203 ATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATT 37262
|||||||| || ||||| | || || || || |||||||| || | || || |||
Sbjct 1759220 ATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAAAAGTAGCGAATT 1759161
Query 37263 TCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322
| | || | | | ||| | ||||| | || ||||||||| |||| ||| ||
Sbjct 1759160 GCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCCACAAATTTGTAGG 1759101
Query 37323 GTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGT 37382
| |||||| || || || | | ||||| ||| | || || | | ||| ||
Sbjct 1759100 AGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGGTGACCCTTCATAAGT 1759041
Query 37383 CTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATAT 37442
|||||| || ||||| ||| || ||||||||||||| || | ||| | ||||| |
Sbjct 1759040 CTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGGCGCCGTAATAAAG 1758981
Query 37443 TGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATC-GAATGCATAGCCCA 37501
|||||||||||||| |||| ||| || || |||||| || |||| | ||
Sbjct 1758980 CGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGGGCTATCAAAAGGCAT-TCGCA 1758922
Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561
| || ||| ||||||||| |||||||| || || || | || || || | ||
Sbjct 1758921 GGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGGCCTGTGGCGCAGAT 1758862
Query 37562 TAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTT 37621
| || || || ||| || ||||| ||||| | ||| || | ||| || | ||| |
Sbjct 1758861 TCGACTTACGCGCCTCTGGCAAAGGATAGTAATTCAGATCAATGACTTTGTTCAAATTCT 1758802
Query 37622 TAACTAGTATTTTCGTAATTATTCTCAACTTGT 37654
| | | | ||| || ||| |||||||||
Sbjct 1758801 TTGCCACAACTTTGGTGATTTCCTTCAACTTGT 1758769
Score = 82.4 bits (90), Expect = 7e-11
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 36823 TTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCT-CCATCCGTAAAAATGCAT 36881
|| ||||||| || |||||| |||||||| || || ||| ||| || || ||||||||
Sbjct 1763020 TTCGTTCTCAAATTATACATCCCAGTTTTGAGACCTT-TCTGCCAACCATAGAAATGCAT 1762962
Query 36882 ACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATC 36941
| || ||||| | ||| | |||| | |||| | ||| ||||| ||
Sbjct 1762961 CGACGACATAACCGCGTAACTTGGAGCCCCAATATGAACATTCATCGCTTGGCTTTGGTC 1762902
Query 36942 TATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAAC 37001
|||||||| || | |||||||||||||| | || |||||| | |||||||| ||
Sbjct 1762901 AATAAACGCCCCCCGATCGGCTGCCATTTCAATAACGATTTTTTGCGGAATCTCCCAGAC 1762842
Query 37002 CGTTTTATATAT 37013
|||||||| ||
Sbjct 1762841 TGTTTTATAGAT 1762830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468512606642080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |