Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4 338 8e-88 seq5 255 8e-63 >seq4 Length=12290766 Score = 338 bits (374), Expect = 8e-88 Identities = 1219/1900 (64%), Gaps = 49/1900 (3%) Strand=Plus/Minus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 || |||| |||||||||||||||| | || |||||||| | || ||||||||| || Sbjct 1759639 TTATCCACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAATAGTACATCCCT 1759580 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA----ATAACT 64945 || |||| ||| | ||| ||||| |||||||| | || || |||| | Sbjct 1759579 GTCTTTAAACCCTTATCCCACCCGTAGAAATGCAT----GGAAGACATGACCCCATAATT 1759524 Query 64946 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 65005 ||| | || ||||| |||||||| || ||||| || || || || || || || || || Sbjct 1759523 CGGGGCCGCAATATGAATATTCATCGACTGACTCTGGTCAATAAACGCGCCTCTATCAGC 1759464 Query 65006 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 65065 ||||| | || || || || | ||| ||||| | |||||||| | | | || | Sbjct 1759463 CGCCATATCAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTTGTTTCAA 1759404 Query 65066 ATCTTCTGGAA-----GGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTC 65120 ||| || |||| || ||| || |||| || ||| || || |||||| |||| Sbjct 1759403 ATCGTCGGGAATCCCCGGAATGTTTT--GAATCGAACCATAATTCGCAATAATCTGATTC 1759346 Query 65121 TTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 65180 || ||| ||| | ||| | ||||| || ||| | | || || ||| |||| || Sbjct 1759345 TTCATCGTATCGTCCCAAAGCCCCCTCTCAGTCAAATCCTTCAGCAGGTGCTGATTCACG 1759286 Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 |||||||| || |||||||| || | || || |||||| || |||||||| Sbjct 1759285 ACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTACGGTTCGGTC 1759226 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 || |||||||| ||||||||||| ||||| || || || ||||| || |||| | || Sbjct 1759225 GATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAAAAGTAGC 1759166 Query 65301 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 65360 ||| | || ||||||| | |||||| | ||| | | ||||| ||| | || Sbjct 1759165 GAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCCACAAATTT 1759106 Query 65361 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 65420 | || || || | | ||| | |||| | || ||| || Sbjct 1759105 GTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGGTGACCCTTCA 1759046 Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480 || || || || || || | ||| || || ||||| ||||| ||||| || || |||||| Sbjct 1759045 TAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGGCGCCGTAA 1758986 Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540 |||| |||||||| || | | ||||| ||| || ||| |||||||||| || | Sbjct 1758985 TAAAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGGGCTATCAAAAGGC--A 1758928 Query 65541 TTT--AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 || | |||||| ||||| || || | || ||||| ||||| || | || || || | Sbjct 1758927 TTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGGCCTGTGGC 1758868 Query 65599 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 65658 | ||| || | || ||||| | |||||| ||||| | ||| || | ||| || | Sbjct 1758867 GCAGATTCGACTTACGCGCCTCTGGCAAAGGATAGTAATTCAGATCAATGACTTTGTTCA 1758808 Query 65659 GATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC-GCTCAT-- 65715 ||| | | | |||||| | ||||||| ||| ||| || | | |||| | Sbjct 1758807 AATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTTAAAGTCGTAGCCGCTCCTGT 1758748 Query 65716 ---CTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 65772 || | || |||||||| | || | || |||| ||||| ||||| | || | | Sbjct 1758747 CCGCTTTCACGAACATGTTTACGGCGATTGAGGCCAAGTTACAGACGGCGATTTCGTCGG 1758688 Query 65773 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 65832 | | | | | ||| || ||||| | ||| || | | |||| || |||||||||| Sbjct 1758687 GTGATGTAAACTCGACTATTTCCGTGCATAAATTGCTGCTCCTGATAGTGCCTAAATTTT 1758628 Query 65833 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 65892 |||| || || || ||||||| || || || || || ||| | || || ||||| || | Sbjct 1758627 GTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATGTAAGGGGTGCCAGTCTCCA 1758568 Query 65893 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-CTTTATTATAGATTTGTATCTC 65951 ||| || | ||| || ||| ||| | || || | | | | | || | Sbjct 1758567 CCTGGGAGACGCAAATAGCGCGCCAAACGTCCCGCGCTGGTAACTGTCTA-ACATAGCGA 1758509 Query 65952 TTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT 66011 || | |||||| | |||||| ||||||||| || |||||| || | | | Sbjct 1758508 CCGTCAGTCTCGTATTTTTCGTACAATTTTTCGAACTCTTCGCCCCAACAATCGGCAAGG 1758449 Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071 || || | | | |||||||||| ||||| | |||| | ||||| || ||| Sbjct 1758448 CCTGGTGACTGGTGTGGACACATCAGGGACCATTTCTCGTCGTTTTTCACCCGGCGCATG 1758389 Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131 || | ||||| |||| | ||| | || || || | | || | | ||| || || Sbjct 1758388 AACAAGTCAGGCGTCCACAAAGCGAAGAACAAGTCGCGTGCCCTTAGCTGCTCCTTCCCC 1758329 Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191 || || || || | | | || ||| |||||| |||||| || || | ||| || Sbjct 1758328 GTGTTTTTCTTCAAGTTTAAAAAATCCAAAATATCGGCATGCCAAGGCTCGAGGTAAATA 1758269 Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251 || | | || || | |||||| || || || || | ||| | |||| ||| ||| || Sbjct 1758268 GCGCAAGCCCCCGGTCTTTTGTTCCCCCCTTGGTCCACGTAGCGCGCGGAGTTGTTAAAA 1758209 Query 66252 ACTCTCAACATTGGAATAATAC---------CATTGGATGTACC------ATTGGTCCCG 66296 || | ||| | || | ||| | | |||| || || | |||||| Sbjct 1758208 ACGCGCAAAACGGGCACAATCCCGTCTGAGACTTTGGGGGTGCCGGCCAAAGTGGTCCGA 1758149 Query 66297 GAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 66356 || | | | || | || || | || ||| | |||| || |||||| || Sbjct 1758148 AAGGT---GGTGCCTTTGGCCCGTAAGTTGTGAATACTGACGCCTAGACCGCCTGCCGTT 1758092 Query 66357 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 66416 || || || | || ||| | | || | |||||||| | | | || || Sbjct 1758091 TTGGAAATCATGGCACATTGGGTCAAACAGCGCGAAATGCCCTCGAGATTGTCCTCGGGG 1758032 Query 66417 A-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 66475 | |||| | ||||| ||| || | |||| | ||| | || || | || Sbjct 1758031 AGAGTTACG-AGAAAGCAGGAGGAGAGTTGGGGTTTGGGTGTTGCAGCTGAGAAGAGTGT 1757973 Query 66476 AGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGT 66534 |||| ||||| || || ||||||| || | |||| ||||| || || || ||||||| Sbjct 1757972 AGGACTGGCGTGTGTGAAGTATTTTTCTGACATGTAG-TTGTAAGTTTCGATGGCTGAGT 1757914 Query 66535 CTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 66594 | || || | || || || || ||||| ||||||| |||||| || || | |||| Sbjct 1757913 CGATGTCTGAGCCGTGGATGCCGACAGCGACGCGCATTAGCATGTGTTGGGGGCGCTCAA 1757854 Query 66595 CGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 66654 |||| ||| ||| ||||| | ||||||||| || | ||||| ||||| || || | Sbjct 1757853 CGATTTTGCCGTTGATTTTAAGCAAGTAGGAACGCTCGAGGGTTTTGAAACCGAAGTAAT 1757794 Query 66655 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 66694 |||| || || || || ||||| || || |||||||| Sbjct 1757793 TGTAAGAGAAATCGCGATCGTAGATTATGCAAGAGTTGAG 1757754 >seq5 Length=15459558 Score = 255 bits (282), Expect = 8e-63 Identities = 622/938 (66%), Gaps = 12/938 (1%) Strand=Plus/Minus Query 35810 CTTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTCTTGAGACATAACTCCCATTTTT 35869 |||||||| || | ||||||| | | | | || | | || | ||||| | || Sbjct 2625117 CTTTAAAAGTCCAAATCTAGATGGTACTCCTCGGTTTGCTCACACGTGACTCCGCTCTTC 2625058 Query 35870 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCC 35929 |||||||| ||||| || || || ||||| || || ||||| || ||| | | Sbjct 2625057 TGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTGGAAATAATCGTC 2624998 Query 35930 ATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 35989 ||||||||||| ||||| || || ||||| | | ||||| || | |||| Sbjct 2624997 ATGAAATCGAACGGATTCTGTGAGTTGTAGATTTTCTCGCACCCCAACTCGCCCAACAAT 2624938 Query 35990 CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 36049 || || || |||||||| || ||| ||||| | || |||||||| || | | Sbjct 2624937 CTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATTCCAATCATGCTG 2624878 Query 36050 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGAT 36109 ||||| | ||| |||| | ||||| | || || |||||||||| ||||| | | Sbjct 2624877 ACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCTTGGATAAT-GCT 2624819 Query 36110 ATTACTGT-TTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATC 36168 | | | ||||| ||| | || || || ||||||||||| || ||||| Sbjct 2624818 TTGAATCCGTTCTTTGGACGGCTTCTGCACCAAGTGAGAGAACATCAAACAGGCAAAATC 2624759 Query 36169 GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAG 36228 ||| ||||| |||||||| || ||| | ||| |||||||| ||||| || ||||| || Sbjct 2624758 GCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGGCATAAG 2624699 Query 36229 GCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTAC 36288 |||||||||||||| || || || ||||| ||||| |||||||| ||||| || Sbjct 2624698 ATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAATCCCTTCGAC 2624639 Query 36289 TGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATG-----TATCCACTTT 36343 || ||||| || | | || || ||| || | | | || || ||||||| Sbjct 2624638 GGCGGCAAACGCCACGATTCGTTCGCCAAAA--GTCGCGTTCTTGCTGTTTATCCACAGC 2624581 Query 36344 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 36403 ||||| ||||||||||| || ||||| |||| ||||| || ||||| || | | Sbjct 2624580 AAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGAACAAGAAC 2624521 Query 36404 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 36463 | || || | || || || || || ||||| | || ||||| |||||||| Sbjct 2624520 TCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTGTACATCTCCGAATGG 2624461 Query 36464 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||||||||| || ||||| || ||||| || || | ||| ||||| | || || || Sbjct 2624460 ATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCGGTCACTTGCACCTCC 2624401 Query 36524 GTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 36583 | || | || | | ||||| || || ||||||||| |||||| ||||| || Sbjct 2624400 TGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAGGCTGCGAAAAATGCA 2624341 Query 36584 AATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGT---TTATTCCAATCATTGATA 36640 | || || || || || ||| | | | ||| || ||||| || | | | Sbjct 2624340 AGAACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTTGTTCTTCCAGTCGTCCAAA 2624281 Query 36641 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 36700 ||||| || | ||| |||||||| |||||||| || || || || | || || | Sbjct 2624280 TCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTCCGCTTGCTTGTATTTG 2624221 Query 36701 TTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 | ||| ||||| | || || || ||||| | ||||| Sbjct 2624220 TCCCAAATGTCGGGGTACTGGATGGGAAAGACCACAAA 2624183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658155671052880