Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq4 338 8e-88
seq5 255 8e-63
>seq4
Length=12290766
Score = 338 bits (374), Expect = 8e-88
Identities = 1219/1900 (64%), Gaps = 49/1900 (3%)
Strand=Plus/Minus
Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889
|| |||| |||||||||||||||| | || |||||||| | || ||||||||| ||
Sbjct 1759639 TTATCCACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAATAGTACATCCCT 1759580
Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA----ATAACT 64945
|| |||| ||| | ||| ||||| |||||||| | || || |||| |
Sbjct 1759579 GTCTTTAAACCCTTATCCCACCCGTAGAAATGCAT----GGAAGACATGACCCCATAATT 1759524
Query 64946 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 65005
||| | || ||||| |||||||| || ||||| || || || || || || || || ||
Sbjct 1759523 CGGGGCCGCAATATGAATATTCATCGACTGACTCTGGTCAATAAACGCGCCTCTATCAGC 1759464
Query 65006 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 65065
||||| | || || || || | ||| ||||| | |||||||| | | | || |
Sbjct 1759463 CGCCATATCAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTTGTTTCAA 1759404
Query 65066 ATCTTCTGGAA-----GGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTC 65120
||| || |||| || ||| || |||| || ||| || || |||||| ||||
Sbjct 1759403 ATCGTCGGGAATCCCCGGAATGTTTT--GAATCGAACCATAATTCGCAATAATCTGATTC 1759346
Query 65121 TTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 65180
|| ||| ||| | ||| | ||||| || ||| | | || || ||| |||| ||
Sbjct 1759345 TTCATCGTATCGTCCCAAAGCCCCCTCTCAGTCAAATCCTTCAGCAGGTGCTGATTCACG 1759286
Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240
|||||||| || |||||||| || | || || |||||| || ||||||||
Sbjct 1759285 ACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTACGGTTCGGTC 1759226
Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300
|| |||||||| ||||||||||| ||||| || || || ||||| || |||| | ||
Sbjct 1759225 GATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAAAAGTAGC 1759166
Query 65301 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 65360
||| | || ||||||| | |||||| | ||| | | ||||| ||| | ||
Sbjct 1759165 GAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCCACAAATTT 1759106
Query 65361 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 65420
| || || || | | ||| | |||| | || ||| ||
Sbjct 1759105 GTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGGTGACCCTTCA 1759046
Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480
|| || || || || || | ||| || || ||||| ||||| ||||| || || ||||||
Sbjct 1759045 TAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGGCGCCGTAA 1758986
Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540
|||| |||||||| || | | ||||| ||| || ||| |||||||||| || |
Sbjct 1758985 TAAAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGGGCTATCAAAAGGC--A 1758928
Query 65541 TTT--AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598
|| | |||||| ||||| || || | || ||||| ||||| || | || || || |
Sbjct 1758927 TTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGGCCTGTGGC 1758868
Query 65599 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 65658
| ||| || | || ||||| | |||||| ||||| | ||| || | ||| || |
Sbjct 1758867 GCAGATTCGACTTACGCGCCTCTGGCAAAGGATAGTAATTCAGATCAATGACTTTGTTCA 1758808
Query 65659 GATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC-GCTCAT-- 65715
||| | | | |||||| | ||||||| ||| ||| || | | |||| |
Sbjct 1758807 AATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTTAAAGTCGTAGCCGCTCCTGT 1758748
Query 65716 ---CTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 65772
|| | || |||||||| | || | || |||| ||||| ||||| | || | |
Sbjct 1758747 CCGCTTTCACGAACATGTTTACGGCGATTGAGGCCAAGTTACAGACGGCGATTTCGTCGG 1758688
Query 65773 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 65832
| | | | | ||| || ||||| | ||| || | | |||| || ||||||||||
Sbjct 1758687 GTGATGTAAACTCGACTATTTCCGTGCATAAATTGCTGCTCCTGATAGTGCCTAAATTTT 1758628
Query 65833 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 65892
|||| || || || ||||||| || || || || || ||| | || || ||||| || |
Sbjct 1758627 GTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATGTAAGGGGTGCCAGTCTCCA 1758568
Query 65893 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-CTTTATTATAGATTTGTATCTC 65951
||| || | ||| || ||| ||| | || || | | | | | || |
Sbjct 1758567 CCTGGGAGACGCAAATAGCGCGCCAAACGTCCCGCGCTGGTAACTGTCTA-ACATAGCGA 1758509
Query 65952 TTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT 66011
|| | |||||| | |||||| ||||||||| || |||||| || | | |
Sbjct 1758508 CCGTCAGTCTCGTATTTTTCGTACAATTTTTCGAACTCTTCGCCCCAACAATCGGCAAGG 1758449
Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071
|| || | | | |||||||||| ||||| | |||| | ||||| || |||
Sbjct 1758448 CCTGGTGACTGGTGTGGACACATCAGGGACCATTTCTCGTCGTTTTTCACCCGGCGCATG 1758389
Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131
|| | ||||| |||| | ||| | || || || | | || | | ||| || ||
Sbjct 1758388 AACAAGTCAGGCGTCCACAAAGCGAAGAACAAGTCGCGTGCCCTTAGCTGCTCCTTCCCC 1758329
Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191
|| || || || | | | || ||| |||||| |||||| || || | ||| ||
Sbjct 1758328 GTGTTTTTCTTCAAGTTTAAAAAATCCAAAATATCGGCATGCCAAGGCTCGAGGTAAATA 1758269
Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251
|| | | || || | |||||| || || || || | ||| | |||| ||| ||| ||
Sbjct 1758268 GCGCAAGCCCCCGGTCTTTTGTTCCCCCCTTGGTCCACGTAGCGCGCGGAGTTGTTAAAA 1758209
Query 66252 ACTCTCAACATTGGAATAATAC---------CATTGGATGTACC------ATTGGTCCCG 66296
|| | ||| | || | ||| | | |||| || || | ||||||
Sbjct 1758208 ACGCGCAAAACGGGCACAATCCCGTCTGAGACTTTGGGGGTGCCGGCCAAAGTGGTCCGA 1758149
Query 66297 GAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 66356
|| | | | || | || || | || ||| | |||| || |||||| ||
Sbjct 1758148 AAGGT---GGTGCCTTTGGCCCGTAAGTTGTGAATACTGACGCCTAGACCGCCTGCCGTT 1758092
Query 66357 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 66416
|| || || | || ||| | | || | |||||||| | | | || ||
Sbjct 1758091 TTGGAAATCATGGCACATTGGGTCAAACAGCGCGAAATGCCCTCGAGATTGTCCTCGGGG 1758032
Query 66417 A-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 66475
| |||| | ||||| ||| || | |||| | ||| | || || | ||
Sbjct 1758031 AGAGTTACG-AGAAAGCAGGAGGAGAGTTGGGGTTTGGGTGTTGCAGCTGAGAAGAGTGT 1757973
Query 66476 AGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGT 66534
|||| ||||| || || ||||||| || | |||| ||||| || || || |||||||
Sbjct 1757972 AGGACTGGCGTGTGTGAAGTATTTTTCTGACATGTAG-TTGTAAGTTTCGATGGCTGAGT 1757914
Query 66535 CTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 66594
| || || | || || || || ||||| ||||||| |||||| || || | ||||
Sbjct 1757913 CGATGTCTGAGCCGTGGATGCCGACAGCGACGCGCATTAGCATGTGTTGGGGGCGCTCAA 1757854
Query 66595 CGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 66654
|||| ||| ||| ||||| | ||||||||| || | ||||| ||||| || || |
Sbjct 1757853 CGATTTTGCCGTTGATTTTAAGCAAGTAGGAACGCTCGAGGGTTTTGAAACCGAAGTAAT 1757794
Query 66655 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 66694
|||| || || || || ||||| || || ||||||||
Sbjct 1757793 TGTAAGAGAAATCGCGATCGTAGATTATGCAAGAGTTGAG 1757754
>seq5
Length=15459558
Score = 255 bits (282), Expect = 8e-63
Identities = 622/938 (66%), Gaps = 12/938 (1%)
Strand=Plus/Minus
Query 35810 CTTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTCTTGAGACATAACTCCCATTTTT 35869
|||||||| || | ||||||| | | | | || | | || | ||||| | ||
Sbjct 2625117 CTTTAAAAGTCCAAATCTAGATGGTACTCCTCGGTTTGCTCACACGTGACTCCGCTCTTC 2625058
Query 35870 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCC 35929
|||||||| ||||| || || || ||||| || || ||||| || ||| | |
Sbjct 2625057 TGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTGGAAATAATCGTC 2624998
Query 35930 ATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 35989
||||||||||| ||||| || || ||||| | | ||||| || | ||||
Sbjct 2624997 ATGAAATCGAACGGATTCTGTGAGTTGTAGATTTTCTCGCACCCCAACTCGCCCAACAAT 2624938
Query 35990 CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 36049
|| || || |||||||| || ||| ||||| | || |||||||| || | |
Sbjct 2624937 CTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATTCCAATCATGCTG 2624878
Query 36050 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGAT 36109
||||| | ||| |||| | ||||| | || || |||||||||| ||||| | |
Sbjct 2624877 ACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCTTGGATAAT-GCT 2624819
Query 36110 ATTACTGT-TTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATC 36168
| | | ||||| ||| | || || || ||||||||||| || |||||
Sbjct 2624818 TTGAATCCGTTCTTTGGACGGCTTCTGCACCAAGTGAGAGAACATCAAACAGGCAAAATC 2624759
Query 36169 GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAG 36228
||| ||||| |||||||| || ||| | ||| |||||||| ||||| || ||||| ||
Sbjct 2624758 GCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGGCATAAG 2624699
Query 36229 GCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTAC 36288
|||||||||||||| || || || ||||| ||||| |||||||| ||||| ||
Sbjct 2624698 ATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAATCCCTTCGAC 2624639
Query 36289 TGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATG-----TATCCACTTT 36343
|| ||||| || | | || || ||| || | | | || || |||||||
Sbjct 2624638 GGCGGCAAACGCCACGATTCGTTCGCCAAAA--GTCGCGTTCTTGCTGTTTATCCACAGC 2624581
Query 36344 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 36403
||||| ||||||||||| || ||||| |||| ||||| || ||||| || | |
Sbjct 2624580 AAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGAACAAGAAC 2624521
Query 36404 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 36463
| || || | || || || || || ||||| | || ||||| ||||||||
Sbjct 2624520 TCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTGTACATCTCCGAATGG 2624461
Query 36464 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523
||||||||||| || ||||| || ||||| || || | ||| ||||| | || || ||
Sbjct 2624460 ATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCGGTCACTTGCACCTCC 2624401
Query 36524 GTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 36583
| || | || | | ||||| || || ||||||||| |||||| ||||| ||
Sbjct 2624400 TGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAGGCTGCGAAAAATGCA 2624341
Query 36584 AATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGT---TTATTCCAATCATTGATA 36640
| || || || || || ||| | | | ||| || ||||| || | | |
Sbjct 2624340 AGAACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTTGTTCTTCCAGTCGTCCAAA 2624281
Query 36641 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 36700
||||| || | ||| |||||||| |||||||| || || || || | || || |
Sbjct 2624280 TCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTCCGCTTGCTTGTATTTG 2624221
Query 36701 TTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738
| ||| ||||| | || || || ||||| | |||||
Sbjct 2624220 TCCCAAATGTCGGGGTACTGGATGGGAAAGACCACAAA 2624183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658155671052880
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