Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1425 196 4e-45 >seq1425 Length=145493 Score = 196 bits (216), Expect = 4e-45 Identities = 408/604 (68%), Gaps = 13/604 (2%) Strand=Plus/Plus Query 20994 CCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACC 21053 ||||| || || || |||| || || || || || |||||||| || ||||| ||| Sbjct 66440 CCCGTAACATGTGCAATCATCCTTGTAAGAAGCGCATAACTGGCGATATTGAACGGCACC 66499 Query 21054 CCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACG 21113 || |||||||| || | | ||||||||||||| ||| |||||| ||| |||||| Sbjct 66500 CCCAGGCCCATATCCCCCGCCCTCTGGTACAGCAAACAGCTCAGCTCGCCCTCGGCCACG 66559 Query 21114 TAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCC-GCGCGAGGTCCGCGGGGTT 21172 ||||||| || | |||||| || || || ||||| | || | || || || Sbjct 66560 AAAAACTGCGCCAGACAGTGACATGGCGGCAGCGCCATTTTGTGCAAA-TCTTTCGGATT 66618 Query 21173 CCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAAT----TAGATCCACCA 21228 |||||| |||| | || | |||||||| || | | |||| | || || Sbjct 66619 CCACGCCGACATGATAATCCTCCGATCGTTCGGATTCGTCCTAATCGTGTGTATGACCCG 66678 Query 21229 CGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCG 21288 || ||||||||||||||||| | ||||| | | | ||||| ||||||||| Sbjct 66679 CGC----CAGCTGGTCCACCCCCTCGTTCGTGTAGTCCCCCTGGACCCCCTTGTACTCCG 66734 Query 21289 CCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCC 21348 ||||||| || | ||||||||||||||| | |||||||| || ||||| | ||| Sbjct 66735 CCCCAAAGTGCCGCCACTGGAACCCGTAGATGGGCCCCAGGTCCCCCTCCTCGTACTCCT 66794 Query 21349 CGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGC 21408 | |||||| | ||| ||| ||||| | || ||||||||||| | ||| Sbjct 66795 CCAAGCCCACTGAGTCCAGAAACGCGCGACTGCTGTTGGCGTCCCAAATGTGCACGTTTT 66854 Query 21409 GGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGA 21468 | || ||| | || | || ||||| |||| ||||| |||| |||||| |||| Sbjct 66855 TCTCCTTGAGGTCGTTCGAATTCGTCGAGCCTTTGATGAACCAGAGCAGCTCCTCGACGA 66914 Query 21469 CGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCG---TCCCTGAGGTTAT 21525 | | | ||| || |||| |||||||| | ||| |||||| || |||| |||| | Sbjct 66915 CAGCGCGCCAGAAAACCCGCTTGGTGGTCAGCAGCGGAAACACGTTATCCCGGAGGGAGT 66974 Query 21526 ATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCCCTCTGCA 21585 | || ||| | |||||| | ||| || || | || ||||||||| |||||| | Sbjct 66975 AGCGCATCTGGACCCCGAAAATCGACAGAGTCCCGATGCGGGTCCTGTCCATCCTCTGGA 67034 Query 21586 CGCC 21589 | || Sbjct 67035 CCCC 67038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427765145451360