Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq1425 196 4e-45
>seq1425
Length=145493
Score = 196 bits (216), Expect = 4e-45
Identities = 408/604 (68%), Gaps = 13/604 (2%)
Strand=Plus/Plus
Query 20994 CCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACC 21053
||||| || || || |||| || || || || || |||||||| || ||||| |||
Sbjct 66440 CCCGTAACATGTGCAATCATCCTTGTAAGAAGCGCATAACTGGCGATATTGAACGGCACC 66499
Query 21054 CCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACG 21113
|| |||||||| || | | ||||||||||||| ||| |||||| ||| ||||||
Sbjct 66500 CCCAGGCCCATATCCCCCGCCCTCTGGTACAGCAAACAGCTCAGCTCGCCCTCGGCCACG 66559
Query 21114 TAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCC-GCGCGAGGTCCGCGGGGTT 21172
||||||| || | |||||| || || || ||||| | || | || || ||
Sbjct 66560 AAAAACTGCGCCAGACAGTGACATGGCGGCAGCGCCATTTTGTGCAAA-TCTTTCGGATT 66618
Query 21173 CCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAAT----TAGATCCACCA 21228
|||||| |||| | || | |||||||| || | | |||| | || ||
Sbjct 66619 CCACGCCGACATGATAATCCTCCGATCGTTCGGATTCGTCCTAATCGTGTGTATGACCCG 66678
Query 21229 CGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCG 21288
|| ||||||||||||||||| | ||||| | | | ||||| |||||||||
Sbjct 66679 CGC----CAGCTGGTCCACCCCCTCGTTCGTGTAGTCCCCCTGGACCCCCTTGTACTCCG 66734
Query 21289 CCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCC 21348
||||||| || | ||||||||||||||| | |||||||| || ||||| | |||
Sbjct 66735 CCCCAAAGTGCCGCCACTGGAACCCGTAGATGGGCCCCAGGTCCCCCTCCTCGTACTCCT 66794
Query 21349 CGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGC 21408
| |||||| | ||| ||| ||||| | || ||||||||||| | |||
Sbjct 66795 CCAAGCCCACTGAGTCCAGAAACGCGCGACTGCTGTTGGCGTCCCAAATGTGCACGTTTT 66854
Query 21409 GGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGA 21468
| || ||| | || | || ||||| |||| ||||| |||| |||||| ||||
Sbjct 66855 TCTCCTTGAGGTCGTTCGAATTCGTCGAGCCTTTGATGAACCAGAGCAGCTCCTCGACGA 66914
Query 21469 CGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCG---TCCCTGAGGTTAT 21525
| | | ||| || |||| |||||||| | ||| |||||| || |||| |||| |
Sbjct 66915 CAGCGCGCCAGAAAACCCGCTTGGTGGTCAGCAGCGGAAACACGTTATCCCGGAGGGAGT 66974
Query 21526 ATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCCCTCTGCA 21585
| || ||| | |||||| | ||| || || | || ||||||||| |||||| |
Sbjct 66975 AGCGCATCTGGACCCCGAAAATCGACAGAGTCCCGATGCGGGTCCTGTCCATCCTCTGGA 67034
Query 21586 CGCC 21589
| ||
Sbjct 67035 CCCC 67038
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427765145451360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |