Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq4 150 2e-31
seq7 140 3e-28
seq2 102 8e-17
>seq4
Length=12290766
Score = 150 bits (166), Expect = 2e-31
Identities = 174/229 (76%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| ||||| | |||||||||||| |||| || || || || || ||||| |||||| |
Sbjct 488939 CCACCTCGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 488998
Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| |||| || | || || ||||||||||| ||| | |||| ||| || |||||||| ||
Sbjct 488999 AAAGTGCGTCCA-TCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGG 489057
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715
|||||||| ||||| ||| |||| | ||| | | ||| | ||||| | ||||| |
Sbjct 489058 AATGCCTTCCTTGTC-CTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGA 489116
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||| || | ||||||||||||| ||||| ||||| ||||||||
Sbjct 489117 CCTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165
>seq7
Length=16482863
Score = 140 bits (154), Expect = 3e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| ||||| | |||||| ||||| || | || || ||||||||||| ||||| || |
Sbjct 10792704 CCTCCTCGCAGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGAC 10792763
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| | |||||||| ||||| |||||| |||||| | |||||||| |||||
Sbjct 10792764 AGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 10792823
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
||||||||||| || |||||| ||| | | || | |||||| | ||| || ||
Sbjct 10792824 ATGCCTTCTTTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTACT 10792883
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | || | |||||| || ||||| || || ||||| ||||||||
Sbjct 10792884 TCCAAAGTGATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCAT 10792930
Score = 118 bits (130), Expect = 1e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| ||||| | ||||| |||||||| | || || |||||||||||||| || |||
Sbjct 10793159 GCCACCTCGGAGCCGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGA 10793218
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| || | |||||||||||||| || || |||||| | |||||||| || ||
Sbjct 10793219 GAGAGTTCGGCCATCTTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGG 10793278
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715
|| || |||||||| ||| |||| | ||| | | ||| | ||||| | || || |
Sbjct 10793279 AATCCCCTCTTTGTC-CTGAATTTTCGCCTTAACGTTTTCGATAGTGTCCGATGGTTCTA 10793337
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
| || | || | |||||| || ||||| || |||||||| ||||||||
Sbjct 10793338 CTTCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCAT 10793386
Score = 116 bits (128), Expect = 4e-21
Identities = 156/217 (72%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608
||||||||| ||||||| || || || || || ||||| |||||| || ||||
Sbjct 10794083 ACGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCC 10794142
Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668
||||||||| ||||||||||| | |||| ||| || ||||| ||||| ||||| || ||
Sbjct 10794143 GTCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCCTCCTT 10794202
Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728
||| ||| || ||| | | || | || || | |||||| || || | || |
Sbjct 10794203 GTCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAACTTCCAGAGTGAT 10794262
Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||||||| || | || || ||||| |||||||||
Sbjct 10794263 GGTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCATA 10794299
>seq2
Length=15265516
Score = 102 bits (112), Expect = 8e-17
Identities = 154/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTC 139611
||||||| ||||| || || || || || || || |||||| | || | || | ||
Sbjct 12970336 AAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGAGAGGGTACGTCCA-TC 12970278
Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671
||||||||||| || || |||| |||||||||||||| || || || || ||||| ||
Sbjct 12970277 CTCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCCTCTTTATC 12970218
Query 139672 GGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730
||| | || | ||| | | || | || || | ||||| ||||||| ||| | |
Sbjct 12970217 -CTGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCGACCTCAAGGGTGATGG 12970159
Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||||| |||| ||||| ||||| || |||||
Sbjct 12970158 TCTTGCCAGTCAGGGTTTTAACGAAAATCTGCAT 12970125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496051089934400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |