Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq4 367 2e-96
seq5 271 1e-67
>seq4
Length=12290766
Score = 367 bits (406), Expect = 2e-96
Identities = 1229/1902 (65%), Gaps = 53/1902 (3%)
Strand=Plus/Minus
Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768
|| |||| |||||||||||||||| | || |||||||| | || ||||||||| ||
Sbjct 1759639 TTATCCACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAATAGTACATCCCT 1759580
Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGA----ATAACT 78824
|| |||| ||| | ||| |||||||||||||| | || || |||| |
Sbjct 1759579 GTCTTTAAACCCTTATCCCACCCGTAGAAATGCAT----GGAAGACATGACCCCATAATT 1759524
Query 78825 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 78884
||| | || ||||| |||||||| || ||||| || || || || || || || || ||
Sbjct 1759523 CGGGGCCGCAATATGAATATTCATCGACTGACTCTGGTCAATAAACGCGCCTCTATCAGC 1759464
Query 78885 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 78944
||||| | || || || || | ||| ||||| | |||||||| | | | || |
Sbjct 1759463 CGCCATATCAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTTGTTTCAA 1759404
Query 78945 ATCTTCTGGAA-----GGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTC 78999
||| || |||| || ||| || |||| || ||| || || |||||| ||||
Sbjct 1759403 ATCGTCGGGAATCCCCGGAATGTTTT--GAATCGAACCATAATTCGCAATAATCTGATTC 1759346
Query 79000 TTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 79059
|| ||| || | ||| | ||||| || ||| | | || || ||| |||| ||
Sbjct 1759345 TTCATCGTATCGTCCCAAAGCCCCCTCTCAGTCAAATCCTTCAGCAGGTGCTGATTCACG 1759286
Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119
|||||||| || |||||||| || | || || |||||| || || ||||| |
Sbjct 1759285 ACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTACGGTTCGGTC 1759226
Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179
||||||||||| ||||||||||| ||||| || ||||| ||||| || |||| | ||
Sbjct 1759225 GATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAAAAGTAGC 1759166
Query 79180 CTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCA 79239
||| | || ||||||| |||||| | ||| | | ||||||||| | ||
Sbjct 1759165 GAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCCACAAATTT 1759106
Query 79240 GACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTG 79299
| || || ||| | || || || | | ||| | ||| | ||| |||
Sbjct 1759105 GTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGGTGACCCTTCA 1759046
Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359
|| || ||||| || || | ||||||||| | ||| ||||| ||||| || || ||||||
Sbjct 1759045 TAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGGCGCCGTAA 1758986
Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419
|||| ||||||||||| | | || || ||| || || |||||||||| || |
Sbjct 1758985 TAAAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGGGCTATCAAAAGG--CA 1758928
Query 79420 TT--TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 79477
|| | |||||| ||||| || || | || ||||| ||||| || | || || || |
Sbjct 1758927 TTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGGCCTGTGGC 1758868
Query 79478 TCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 79537
| ||| || | || ||||| | |||||| ||||| | ||| || | ||| || |
Sbjct 1758867 GCAGATTCGACTTACGCGCCTCTGGCAAAGGATAGTAATTCAGATCAATGACTTTGTTCA 1758808
Query 79538 GATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATC-------GT 79590
|||| | | | |||||| | ||||| | ||| ||| || | | ||
Sbjct 1758807 AATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTTAAAGTCGTAGCCGCTCCTGT 1758748
Query 79591 CCATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTA 79650
|| || | || |||||||| | |||| || |||| ||||| ||||| | || |
Sbjct 1758747 CC-GCTTTCACGAACATGTTTACGGCGATTGAGGCCAAGTTACAGACGGCGATTTCGTCG 1758689
Query 79651 GCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTT 79710
| | | | | | |||||| ||||| | || || | | | || || |||||||||
Sbjct 1758688 GGTGATGTAAACTCGACTATTTCCGTGCATAAATTGCTGCTCCTGATAGTGCCTAAATTT 1758629
Query 79711 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCA 79770
||||| || || || ||||||| || || || || || ||| | || || ||||| ||
Sbjct 1758628 TGTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATGTAAGGGGTGCCAGTCTCC 1758569
Query 79771 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACT--TGTATC 79828
| ||| || | ||| || ||| ||| | || || | | | | || || |
Sbjct 1758568 ACCTGGGAGACGCAAATAGCGCGCCAAACGTCCCGCGC--TGGTAACTGTCTAACATAGC 1758511
Query 79829 TCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTA 79888
|| | ||||||| | || ||| ||||||||| || |||||| |||| | |
Sbjct 1758510 GACCGTCAGTCTCGTATTTTTCGTACAATTTTTCGAACTCTTCGCCCCAACAATCGGCAA 1758451
Query 79889 ATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCA 79948
|| || | | || |||||||||| ||||| | | || | || || || ||
Sbjct 1758450 GGCCTGGTGACTGGTGTGGACACATCAGGGACCATTTCTCGTCGTTTTTCACCCGGCGCA 1758391
Query 79949 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 80008
| || | ||||| |||| | ||| | || | || | | || ||| ||| || |
Sbjct 1758390 TGAACAAGTCAGGCGTCCACAAAGCGAAGAACAAGTCGCGTGCCCTTAGCTGCTCCTTCC 1758331
Query 80009 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 80068
| || || || || | | | || ||| |||||| | |||||| || || | ||| |
Sbjct 1758330 CCGTGTTTTTCTTCAAGTTTAAAAAATCCAAAATATCGGCATGCCAAGGCTCGAGGTAAA 1758271
Query 80069 TGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 80128
| || | | ||||||| |||||| || || || || | ||| | |||| ||| |||
Sbjct 1758270 TAGCGCAAGCCCCCGGTCTTTTGTTCCCCCCTTGGTCCACGTAGCGCGCGGAGTTGTTAA 1758211
Query 80129 AAACTCTCAACATTGGAATAATAC---------CATTGGATGTACC------ATTGGTCC 80173
|||| | ||| | || | ||| | | |||| || || | ||||||
Sbjct 1758210 AAACGCGCAAAACGGGCACAATCCCGTCTGAGACTTTGGGGGTGCCGGCCAAAGTGGTCC 1758151
Query 80174 CGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCA 80233
|| | | | || |||| || | || ||| | |||| || ||||||
Sbjct 1758150 GAAAGGT---GGTGCCTTTGGCCCGTAAGTTGTGAATACTGACGCCTAGACCGCCTGCCG 1758094
Query 80234 TTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAA 80293
|||| || || | || ||| | | || | |||||||| | | || ||
Sbjct 1758093 TTTTGGAAATCATGGCACATTGGGTCAAACAGCGCGAAATGCCCTCGAGATTGTCCTCGG 1758034
Query 80294 TCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG 80352
| |||| | ||||| ||| || | |||| | ||| | || || |
Sbjct 1758033 GGAGAGTTACG-AGAAAGCAGGAGGAGAGTTGGGGTTTGGGTGTTGCAGCTGAGAAGAGT 1757975
Query 80353 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGA 80411
|||||| ||||| || || ||||||| |||| |||| ||||| || || || |||||
Sbjct 1757974 GTAGGACTGGCGTGTGTGAAGTATTTTTCTGACATGTAG-TTGTAAGTTTCGATGGCTGA 1757916
Query 80412 TTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471
|| || || | || || || || ||||| ||||||| |||||| || || | ||
Sbjct 1757915 GTCGATGTCTGAGCCGTGGATGCCGACAGCGACGCGCATTAGCATGTGTTGGGGGCGCTC 1757856
Query 80472 AACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATA 80531
|||||| ||| || ||||| | |||||| || || | ||||| ||||| || ||
Sbjct 1757855 AACGATTTTGCCGTTGATTTTAAGCAAGTAGGAACGCTCGAGGGTTTTGAAACCGAAGTA 1757796
Query 80532 GTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573
||||| || || || || ||||| || || ||||||||
Sbjct 1757795 ATTGTAAGAGAAATCGCGATCGTAGATTATGCAAGAGTTGAG 1757754
>seq5
Length=15459558
Score = 271 bits (300), Expect = 1e-67
Identities = 620/928 (67%), Gaps = 9/928 (1%)
Strand=Plus/Minus
Query 49612 CTTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGAGACATAACTCCCATTTTT 49671
||||||||||| | ||||||| | | | || | | || | ||||| | ||
Sbjct 2625117 CTTTAAAAGTCCAAATCTAGATGGTACTCCTCGGTTTGCTCACACGTGACTCCGCTCTTC 2625058
Query 49672 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 49731
|||||||| ||||| || || || ||||| || || ||||| || ||| | |
Sbjct 2625057 TGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTGGAAATAATCGTC 2624998
Query 49732 ATGAAATCAAACGGATTG-GTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 49790
|||||||| |||||||| || | || || ||||| | | ||||| || | |||
Sbjct 2624997 ATGAAATCGAACGGATTCTGTGAG-TTGTAGATTTTCTCGCACCCCAACTCGCCCAACAA 2624939
Query 49791 TCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 49850
||| || || |||||||| || ||| ||||| | || |||||||| || | |
Sbjct 2624938 TCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATTCCAATCATGCT 2624879
Query 49851 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGA 49910
||||| | ||| |||| | ||||| | || || ||||| ||| |||||
Sbjct 2624878 GACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCTTGGATAATGCT 2624819
Query 49911 TCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATC 49970
| || ||||| ||| |||| || || ||||||||||| || |||||
Sbjct 2624818 TTGAATCCGTTCTTTGGACGGCTTCTGCACCAAGTGAGAGAACATCAAACAGGCAAAATC 2624759
Query 49971 GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAG 50030
||| || || |||||||| || ||| ||||| |||||||| ||||| || ||||| ||
Sbjct 2624758 GCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGGCATAAG 2624699
Query 50031 GCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTAC 50090
|||||||||||||| || || || ||||| ||||| ||||| || ||||| ||
Sbjct 2624698 ATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAATCCCTTCGAC 2624639
Query 50091 TGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG---CTGTCATGTATCCACTTTTG 50147
|||||||| || || | || || ||| || | ||| || | |||||||
Sbjct 2624638 GGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTGCTGTTTATCCACAGCAA 2624579
Query 50148 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 50207
||||| ||||||||||| || ||||| |||| ||| || || ||||| || | | |
Sbjct 2624578 GGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGAACAAGAACTC 2624519
Query 50208 tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 50267
|| || | || || || || |||||||| | || ||||| |||||||| ||
Sbjct 2624518 CTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTGTACATCTCCGAATGGAT 2624459
Query 50268 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGT 50327
||||||||| || || || || ||||| || || | ||| ||||| | ||||| ||
Sbjct 2624458 GTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCGGTCACTTGCACCTCCTG 2624399
Query 50328 ACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 50387
| || | || | | ||||| || || ||||||||| |||||| ||||| || |
Sbjct 2624398 GCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAGGCTGCGAAAAATGCAAG 2624339
Query 50388 TACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGT---TTATTCCAATCATTGATATC 50444
|| || || || | ||| | | | ||| || ||||| || | | |||
Sbjct 2624338 AACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTTGTTCTTCCAGTCGTCCAAATC 2624279
Query 50445 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 50504
||| || | |||||||||||| |||||||| || || || || | || || | |
Sbjct 2624278 TTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTCCGCTTGCTTGTATTTGTC 2624219
Query 50505 CCAGATGTCATGATATTGGATTGGGAAA 50532
||| ||||| | || |||| |||||||
Sbjct 2624218 CCAAATGTCGGGGTACTGGA-TGGGAAA 2624192
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718250107054480
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