Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4 367 2e-96 seq5 271 1e-67 >seq4 Length=12290766 Score = 367 bits (406), Expect = 2e-96 Identities = 1229/1902 (65%), Gaps = 53/1902 (3%) Strand=Plus/Minus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 || |||| |||||||||||||||| | || |||||||| | || ||||||||| || Sbjct 1759639 TTATCCACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAATAGTACATCCCT 1759580 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGA----ATAACT 78824 || |||| ||| | ||| |||||||||||||| | || || |||| | Sbjct 1759579 GTCTTTAAACCCTTATCCCACCCGTAGAAATGCAT----GGAAGACATGACCCCATAATT 1759524 Query 78825 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 78884 ||| | || ||||| |||||||| || ||||| || || || || || || || || || Sbjct 1759523 CGGGGCCGCAATATGAATATTCATCGACTGACTCTGGTCAATAAACGCGCCTCTATCAGC 1759464 Query 78885 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 78944 ||||| | || || || || | ||| ||||| | |||||||| | | | || | Sbjct 1759463 CGCCATATCAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTTGTTTCAA 1759404 Query 78945 ATCTTCTGGAA-----GGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTC 78999 ||| || |||| || ||| || |||| || ||| || || |||||| |||| Sbjct 1759403 ATCGTCGGGAATCCCCGGAATGTTTT--GAATCGAACCATAATTCGCAATAATCTGATTC 1759346 Query 79000 TTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 79059 || ||| || | ||| | ||||| || ||| | | || || ||| |||| || Sbjct 1759345 TTCATCGTATCGTCCCAAAGCCCCCTCTCAGTCAAATCCTTCAGCAGGTGCTGATTCACG 1759286 Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 |||||||| || |||||||| || | || || |||||| || || ||||| | Sbjct 1759285 ACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTACGGTTCGGTC 1759226 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 ||||||||||| ||||||||||| ||||| || ||||| ||||| || |||| | || Sbjct 1759225 GATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAAAAGTAGC 1759166 Query 79180 CTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCA 79239 ||| | || ||||||| |||||| | ||| | | ||||||||| | || Sbjct 1759165 GAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCCACAAATTT 1759106 Query 79240 GACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTG 79299 | || || ||| | || || || | | ||| | ||| | ||| ||| Sbjct 1759105 GTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGGTGACCCTTCA 1759046 Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || || ||||| || || | ||||||||| | ||| ||||| ||||| || || |||||| Sbjct 1759045 TAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGGCGCCGTAA 1758986 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 |||| ||||||||||| | | || || ||| || || |||||||||| || | Sbjct 1758985 TAAAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGGGCTATCAAAAGG--CA 1758928 Query 79420 TT--TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 79477 || | |||||| ||||| || || | || ||||| ||||| || | || || || | Sbjct 1758927 TTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGGCCTGTGGC 1758868 Query 79478 TCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 79537 | ||| || | || ||||| | |||||| ||||| | ||| || | ||| || | Sbjct 1758867 GCAGATTCGACTTACGCGCCTCTGGCAAAGGATAGTAATTCAGATCAATGACTTTGTTCA 1758808 Query 79538 GATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATC-------GT 79590 |||| | | | |||||| | ||||| | ||| ||| || | | || Sbjct 1758807 AATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTTAAAGTCGTAGCCGCTCCTGT 1758748 Query 79591 CCATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTA 79650 || || | || |||||||| | |||| || |||| ||||| ||||| | || | Sbjct 1758747 CC-GCTTTCACGAACATGTTTACGGCGATTGAGGCCAAGTTACAGACGGCGATTTCGTCG 1758689 Query 79651 GCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTT 79710 | | | | | | |||||| ||||| | || || | | | || || ||||||||| Sbjct 1758688 GGTGATGTAAACTCGACTATTTCCGTGCATAAATTGCTGCTCCTGATAGTGCCTAAATTT 1758629 Query 79711 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCA 79770 ||||| || || || ||||||| || || || || || ||| | || || ||||| || Sbjct 1758628 TGTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATGTAAGGGGTGCCAGTCTCC 1758569 Query 79771 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACT--TGTATC 79828 | ||| || | ||| || ||| ||| | || || | | | | || || | Sbjct 1758568 ACCTGGGAGACGCAAATAGCGCGCCAAACGTCCCGCGC--TGGTAACTGTCTAACATAGC 1758511 Query 79829 TCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTA 79888 || | ||||||| | || ||| ||||||||| || |||||| |||| | | Sbjct 1758510 GACCGTCAGTCTCGTATTTTTCGTACAATTTTTCGAACTCTTCGCCCCAACAATCGGCAA 1758451 Query 79889 ATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCA 79948 || || | | || |||||||||| ||||| | | || | || || || || Sbjct 1758450 GGCCTGGTGACTGGTGTGGACACATCAGGGACCATTTCTCGTCGTTTTTCACCCGGCGCA 1758391 Query 79949 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 80008 | || | ||||| |||| | ||| | || | || | | || ||| ||| || | Sbjct 1758390 TGAACAAGTCAGGCGTCCACAAAGCGAAGAACAAGTCGCGTGCCCTTAGCTGCTCCTTCC 1758331 Query 80009 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 80068 | || || || || | | | || ||| |||||| | |||||| || || | ||| | Sbjct 1758330 CCGTGTTTTTCTTCAAGTTTAAAAAATCCAAAATATCGGCATGCCAAGGCTCGAGGTAAA 1758271 Query 80069 TGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 80128 | || | | ||||||| |||||| || || || || | ||| | |||| ||| ||| Sbjct 1758270 TAGCGCAAGCCCCCGGTCTTTTGTTCCCCCCTTGGTCCACGTAGCGCGCGGAGTTGTTAA 1758211 Query 80129 AAACTCTCAACATTGGAATAATAC---------CATTGGATGTACC------ATTGGTCC 80173 |||| | ||| | || | ||| | | |||| || || | |||||| Sbjct 1758210 AAACGCGCAAAACGGGCACAATCCCGTCTGAGACTTTGGGGGTGCCGGCCAAAGTGGTCC 1758151 Query 80174 CGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCA 80233 || | | | || |||| || | || ||| | |||| || |||||| Sbjct 1758150 GAAAGGT---GGTGCCTTTGGCCCGTAAGTTGTGAATACTGACGCCTAGACCGCCTGCCG 1758094 Query 80234 TTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAA 80293 |||| || || | || ||| | | || | |||||||| | | || || Sbjct 1758093 TTTTGGAAATCATGGCACATTGGGTCAAACAGCGCGAAATGCCCTCGAGATTGTCCTCGG 1758034 Query 80294 TCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG 80352 | |||| | ||||| ||| || | |||| | ||| | || || | Sbjct 1758033 GGAGAGTTACG-AGAAAGCAGGAGGAGAGTTGGGGTTTGGGTGTTGCAGCTGAGAAGAGT 1757975 Query 80353 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGA 80411 |||||| ||||| || || ||||||| |||| |||| ||||| || || || ||||| Sbjct 1757974 GTAGGACTGGCGTGTGTGAAGTATTTTTCTGACATGTAG-TTGTAAGTTTCGATGGCTGA 1757916 Query 80412 TTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471 || || || | || || || || ||||| ||||||| |||||| || || | || Sbjct 1757915 GTCGATGTCTGAGCCGTGGATGCCGACAGCGACGCGCATTAGCATGTGTTGGGGGCGCTC 1757856 Query 80472 AACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATA 80531 |||||| ||| || ||||| | |||||| || || | ||||| ||||| || || Sbjct 1757855 AACGATTTTGCCGTTGATTTTAAGCAAGTAGGAACGCTCGAGGGTTTTGAAACCGAAGTA 1757796 Query 80532 GTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573 ||||| || || || || ||||| || || |||||||| Sbjct 1757795 ATTGTAAGAGAAATCGCGATCGTAGATTATGCAAGAGTTGAG 1757754 >seq5 Length=15459558 Score = 271 bits (300), Expect = 1e-67 Identities = 620/928 (67%), Gaps = 9/928 (1%) Strand=Plus/Minus Query 49612 CTTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGAGACATAACTCCCATTTTT 49671 ||||||||||| | ||||||| | | | || | | || | ||||| | || Sbjct 2625117 CTTTAAAAGTCCAAATCTAGATGGTACTCCTCGGTTTGCTCACACGTGACTCCGCTCTTC 2625058 Query 49672 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 49731 |||||||| ||||| || || || ||||| || || ||||| || ||| | | Sbjct 2625057 TGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTGGAAATAATCGTC 2624998 Query 49732 ATGAAATCAAACGGATTG-GTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 49790 |||||||| |||||||| || | || || ||||| | | ||||| || | ||| Sbjct 2624997 ATGAAATCGAACGGATTCTGTGAG-TTGTAGATTTTCTCGCACCCCAACTCGCCCAACAA 2624939 Query 49791 TCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 49850 ||| || || |||||||| || ||| ||||| | || |||||||| || | | Sbjct 2624938 TCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATTCCAATCATGCT 2624879 Query 49851 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGA 49910 ||||| | ||| |||| | ||||| | || || ||||| ||| ||||| Sbjct 2624878 GACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCTTGGATAATGCT 2624819 Query 49911 TCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATC 49970 | || ||||| ||| |||| || || ||||||||||| || ||||| Sbjct 2624818 TTGAATCCGTTCTTTGGACGGCTTCTGCACCAAGTGAGAGAACATCAAACAGGCAAAATC 2624759 Query 49971 GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAG 50030 ||| || || |||||||| || ||| ||||| |||||||| ||||| || ||||| || Sbjct 2624758 GCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGGCATAAG 2624699 Query 50031 GCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTAC 50090 |||||||||||||| || || || ||||| ||||| ||||| || ||||| || Sbjct 2624698 ATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAATCCCTTCGAC 2624639 Query 50091 TGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG---CTGTCATGTATCCACTTTTG 50147 |||||||| || || | || || ||| || | ||| || | ||||||| Sbjct 2624638 GGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTGCTGTTTATCCACAGCAA 2624579 Query 50148 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 50207 ||||| ||||||||||| || ||||| |||| ||| || || ||||| || | | | Sbjct 2624578 GGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGAACAAGAACTC 2624519 Query 50208 tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 50267 || || | || || || || |||||||| | || ||||| |||||||| || Sbjct 2624518 CTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTGTACATCTCCGAATGGAT 2624459 Query 50268 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGT 50327 ||||||||| || || || || ||||| || || | ||| ||||| | ||||| || Sbjct 2624458 GTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCGGTCACTTGCACCTCCTG 2624399 Query 50328 ACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 50387 | || | || | | ||||| || || ||||||||| |||||| ||||| || | Sbjct 2624398 GCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAGGCTGCGAAAAATGCAAG 2624339 Query 50388 TACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGT---TTATTCCAATCATTGATATC 50444 || || || || | ||| | | | ||| || ||||| || | | ||| Sbjct 2624338 AACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTTGTTCTTCCAGTCGTCCAAATC 2624279 Query 50445 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 50504 ||| || | |||||||||||| |||||||| || || || || | || || | | Sbjct 2624278 TTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTCCGCTTGCTTGTATTTGTC 2624219 Query 50505 CCAGATGTCATGATATTGGATTGGGAAA 50532 ||| ||||| | || |||| ||||||| Sbjct 2624218 CCAAATGTCGGGGTACTGGA-TGGGAAA 2624192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718250107054480