Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4 286 5e-72 seq5 246 4e-60 >seq4 Length=12290766 Score = 286 bits (316), Expect = 5e-72 Identities = 1199/1889 (63%), Gaps = 51/1889 (3%) Strand=Plus/Minus Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCT 70851 || |||| ||| || ||||||||| | || | |||||| | || ||||||||| ||| Sbjct 1759639 TTATCCACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAATAGTACATCCCT 1759580 Query 70852 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA----ATAGCT 70907 || |||| ||| | ||| ||||| |||||||| | || || ||| | Sbjct 1759579 GTCTTTAAACCCTTATCCCACCCGTAGAAATGCAT----GGAAGACATGACCCCATAATT 1759524 Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967 || | || || |||||||||||||||||||| || || || || || || || || || Sbjct 1759523 CGGGGCCGCAATATGAATATTCATCGACTGACTCTGGTCAATAAACGCGCCTCTATCAGC 1759464 Query 70968 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 71027 ||||| | || || || || | ||| ||||| | |||||||| | | | || | Sbjct 1759463 CGCCATATCAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTTGTTTCAA 1759404 Query 71028 ATCTTCTGGAA-----GGTTTGTATTCTGAATGGATCCACCATCTGCAATAATCCTATTT 71082 ||| || |||| || ||| || |||| || ||| || ||||||||| ||| Sbjct 1759403 ATCGTCGGGAATCCCCGGAATGTTTT--GAATCGAACCATAATTCGCAATAATCTGATTC 1759346 Query 71083 TTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACT 71142 || ||| || | ||| | ||||| || ||| | | || || || |||| || Sbjct 1759345 TTCATCGTATCGTCCCAAAGCCCCCTCTCAGTCAAATCCTTCAGCAGGTGCTGATTCACG 1759286 Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 |||||||| || |||||||| || | | || |||||| || |||||||| Sbjct 1759285 ACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTACGGTTCGGTC 1759226 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 || |||||||| ||||||||||| ||||| || || || ||||| || |||| | ||| Sbjct 1759225 GATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAAAAGTAGC 1759166 Query 71263 CTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCC 71322 ||| | || ||| | | |||||| | ||| | | ||||| ||| | || Sbjct 1759165 GAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCCACAAATTT 1759106 Query 71323 GATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCA 71382 | || || | || | ||| | ||| ||| || Sbjct 1759105 GTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGGTGACCCTTCA 1759046 Query 71383 TATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAA 71442 || || || || || || | |||||||| ||||| ||||| ||||| || || || ||| Sbjct 1759045 TAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGGCGCCGTAA 1758986 Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 |||| ||||||||||| | | || || ||| || |||||||||||||| || | Sbjct 1758985 TAAAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGGGCTATCAAAAGG--CA 1758928 Query 71503 TT--TAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 || | |||||| ||||| || || | || ||||| ||||| || | || ||||| | Sbjct 1758927 TTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGGCCTGTGGC 1758868 Query 71561 TCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 71620 | ||| || | || ||||| | |||||| ||||| | ||| || | ||| || | Sbjct 1758867 GCAGATTCGACTTACGCGCCTCTGGCAAAGGATAGTAATTCAGATCAATGACTTTGTTCA 1758808 Query 71621 GATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCC--- 71674 ||| | | | |||||| | ||||| | ||| ||| || | |||| Sbjct 1758807 AATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTTAAAGTCGTAGCCGCTCCTGT 1758748 Query 71675 CATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 71734 | || | || |||| ||| | ||| | || |||| ||||| ||||| | || | | Sbjct 1758747 CCGCTTTCACGAACATGTTTACGGCGATTGAGGCCAAGTTACAGACGGCGATTTCGTCGG 1758688 Query 71735 CATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 71794 | | | | | ||||| ||||| | ||| || | | |||| || |||||||||| Sbjct 1758687 GTGATGTAAACTCGACTATTTCCGTGCATAAATTGCTGCTCCTGATAGTGCCTAAATTTT 1758628 Query 71795 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAA 71854 |||| || || || ||||||| || || || || || || | || || ||||| || | Sbjct 1758627 GTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATGTAAGGGGTGCCAGTCTCCA 1758568 Query 71855 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCT--TGTATCT 71912 ||| || | ||| || ||| ||| | || || | | | ||| || | Sbjct 1758567 CCTGGGAGACGCAAATAGCGCGCCAAACGTCCCGCGC--TGGTAACTGTCTAACATAGCG 1758510 Query 71913 CTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAA 71972 || | ||||||| | || ||| ||||||||| || |||||| || | | | Sbjct 1758509 ACCGTCAGTCTCGTATTTTTCGTACAATTTTTCGAACTCTTCGCCCCAACAATCGGCAAG 1758450 Query 71973 TCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCAT 72032 || || | | | |||||||||| ||||| | | || | || || || ||| Sbjct 1758449 GCCTGGTGACTGGTGTGGACACATCAGGGACCATTTCTCGTCGTTTTTCACCCGGCGCAT 1758390 Query 72033 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCC 72092 || | ||||| |||| | ||| | || | || | | || ||| ||| || || Sbjct 1758389 GAACAAGTCAGGCGTCCACAAAGCGAAGAACAAGTCGCGTGCCCTTAGCTGCTCCTTCCC 1758330 Query 72093 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 72152 || || || || | | | || ||| |||||| | |||||| || || | ||| || Sbjct 1758329 CGTGTTTTTCTTCAAGTTTAAAAAATCCAAAATATCGGCATGCCAAGGCTCGAGGTAAAT 1758270 Query 72153 GGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 72212 || | | ||||| | |||||| || || || || | ||| | |||| ||| ||| | Sbjct 1758269 AGCGCAAGCCCCCGGTCTTTTGTTCCCCCCTTGGTCCACGTAGCGCGCGGAGTTGTTAAA 1758210 Query 72213 AACTCTCAACATTGGAATAATAC---------CATTGGATGCACC------ATTGGTCCC 72257 ||| | ||| | || | ||| | | |||| | || | |||||| Sbjct 1758209 AACGCGCAAAACGGGCACAATCCCGTCTGAGACTTTGGGGGTGCCGGCCAAAGTGGTCCG 1758150 Query 72258 GGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCAT 72317 || | | | || |||| || | ||| ||| | |||| || |||||| | Sbjct 1758149 AAAGGT---GGTGCCTTTGGCCCGTAAGTTGTGAATACTGACGCCTAGACCGCCTGCCGT 1758093 Query 72318 TTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCAT 72377 ||| || || | || ||| | | || | |||||||| | | | || || Sbjct 1758092 TTTGGAAATCATGGCACATTGGGTCAAACAGCGCGAAATGCCCTCGAGATTGTCCTCGGG 1758033 Query 72378 CA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGG 72436 | |||| | ||||| ||| || | |||| | ||| | || || | | Sbjct 1758032 GAGAGTTACG-AGAAAGCAGGAGGAGAGTTGGGGTTTGGGTGTTGCAGCTGAGAAGAGTG 1757974 Query 72437 TAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGAT 72495 ||||| ||||| || || ||||||| |||| |||| ||||| || || || ||||| Sbjct 1757973 TAGGACTGGCGTGTGTGAAGTATTTTTCTGACATGTAG-TTGTAAGTTTCGATGGCTGAG 1757915 Query 72496 TCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555 || || || | || || || || ||||| ||||||| ||| || || || | ||| Sbjct 1757914 TCGATGTCTGAGCCGTGGATGCCGACAGCGACGCGCATTAGCATGTGTTGGGGGCGCTCA 1757855 Query 72556 ACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 72615 ||||| ||| || ||||| | ||||||||| || | ||||| ||||| || || Sbjct 1757854 ACGATTTTGCCGTTGATTTTAAGCAAGTAGGAACGCTCGAGGGTTTTGAAACCGAAGTAA 1757795 Query 72616 TTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||| || || || || ||||| || || Sbjct 1757794 TTGTAAGAGAAATCGCGATCGTAGATTAT 1757766 Score = 138 bits (152), Expect = 2e-27 Identities = 337/508 (66%), Gaps = 6/508 (1%) Strand=Plus/Minus Query 71391 GTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGT 71450 ||| || || ||| ||||||| | ||| |||| || || || || ||||||| | || Sbjct 1762454 GTACGGCCCATCTCTTTCGGCAATTTCGGAACTTGCTTCCAAGGCGGCATAATACAAAGT 1762395 Query 71451 TTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG 71510 ||||||||| | | |||||| | || |||||||| ||||| || | | ||| Sbjct 1762394 TTCGAAAATTTGCACATTGAGTGAACGAGCCTCCGGGCTCTCAAACGGCATACGCAGGAG 1762335 Query 71511 AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGA 71570 ||| || | || || || ||||| || || || ||||| |||| ||||||| ||| || Sbjct 1762334 AATGAAAGTATCGGCCAAACCTTGCACCCCTATTCCGATCGGTCGGTGTCTCAAATTCGA 1762275 Query 71571 AATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 71630 || ||| || || | || || | | | ||||| || ||||||||| || Sbjct 1762274 CGTTCGAGCCTCAGGGCTCGGGTACGCACTTACGTCTATCGCCTTGTTGAGATTTTTGGT 1762215 Query 71631 TATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATC---TCCCATC--TATT-AC 71684 || |||||||| | || | || ||||| | | ||| || ||| || Sbjct 1762214 TAAGGTCTTGACCACTTGTTTCAACTTTTCGAAATCGTAACCGTTCCGTTCCGGATTCAC 1762155 Query 71685 AAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATA 71744 |||| ||| | ||||| || ||| | ||||| |||| | || | || | | || Sbjct 1762154 GAACATGTTTAGTGCAACTGAGGCCGTAATACAAGCGGCAATTTCGTCAGAAGAGCTGTA 1762095 Query 71745 TTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 71804 ||| || ||| |||| | | | |||| ||||| || ||||||||||| || || || Sbjct 1762094 TTGAATTGATTCGGTGCTCAAACTGCTACTTTTGATCGTCCCTAAATTTTGCTGGTTGCT 1762035 Query 71805 CTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTC 71864 ||||| || || |||||||| || | |||| | || | || ||||| ||||| || | Sbjct 1762034 TTTTTTATTGCAAGCATCCTTGTACAAAATATAGGGCGAGCCTGTTTCCATCTGTGAGAC 1761975 Query 71865 TATAATCGCTTTCCAGACGACTCGAGCC 71892 ||||| ||||||| | || ||| Sbjct 1761974 GCAGATCGCGCGCCAGACGTCCCGTGCC 1761947 >seq5 Length=15459558 Score = 246 bits (272), Expect = 4e-60 Identities = 618/931 (66%), Gaps = 15/931 (2%) Strand=Plus/Minus Query 41717 CTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAGACATAACTCCCATTTTT 41776 ||||||||||| | ||||| | | | | | || | | || | ||||| | || Sbjct 2625117 CTTTAAAAGTCCAAATCTAGATGGTACTCCTCGGTTTGCTCACACGTGACTCCGCTCTTC 2625058 Query 41777 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCC 41836 |||||||| ||||| || || || ||||| ||||| ||||| || ||| | | Sbjct 2625057 TGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTGGAAATAATCGTC 2624998 Query 41837 ATGAAATCAAACGGATTG-GTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 41895 |||||||| |||||||| || | || || ||||| | | ||||| || | ||| Sbjct 2624997 ATGAAATCGAACGGATTCTGTGAG-TTGTAGATTTTCTCGCACCCCAACTCGCCCAACAA 2624939 Query 41896 TCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 41955 ||| || || | ||||| || ||| ||||| | || |||||||| || | | Sbjct 2624938 TCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATTCCAATCATGCT 2624879 Query 41956 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 42015 ||||| | ||| |||| | ||||| | || || |||||||||| ||||| | Sbjct 2624878 GACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCTTGGATAAT-GC 2624820 Query 42016 TCTTACTGT-TTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 42074 | | | | ||||| ||| | || || || ||||||||||| || |||| Sbjct 2624819 TTTGAATCCGTTCTTTGGACGGCTTCTGCACCAAGTGAGAGAACATCAAACAGGCAAAAT 2624760 Query 42075 CGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 42134 |||| || || ||||| || || ||| | ||| |||||||| ||||| || ||||| | Sbjct 2624759 CGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGGCATAA 2624700 Query 42135 GGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTA 42194 | |||||||||||||| || || || ||||| ||||| ||||| || ||||| | Sbjct 2624699 GATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAATCCCTTCGA 2624640 Query 42195 CTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATG-----TATCCACTT 42249 | || ||||| || | | || || ||| || | | | || || ||||||| Sbjct 2624639 CGGCGGCAAACGCCACGATTCGTTCGCCAAAA--GTCGCGTTCTTGCTGTTTATCCACAG 2624582 Query 42250 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 ||||| ||||||||||| || ||||| |||| ||| || || ||||| || | | Sbjct 2624581 CAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGAACAAGAA 2624522 Query 42310 GtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATG 42369 | || || | || || || || |||||||| | || ||||| || ||||| Sbjct 2624521 CTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTGTACATCTCCGAATG 2624462 Query 42370 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 ||||||||||| || || || || ||||| || || | || ||||| || || || || Sbjct 2624461 GATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCGGTCACTTGCACCTC 2624402 Query 42430 TGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGC 42489 | || | || | | |||||||| || ||||||||| |||||| ||||| || Sbjct 2624401 CTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAGGCTGCGAAAAATGC 2624342 Query 42490 CAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT---TTATTCCAATCATTGAT 42546 | || || || || || ||| || | | | | || ||||| || | | Sbjct 2624341 AAGAACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTTGTTCTTCCAGTCGTCCAA 2624282 Query 42547 ATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACAT 42606 |||||| || | |||||||||||| ||||||||| || ||||| || | || || | Sbjct 2624281 ATCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTCCGCTTGCTTGTATTT 2624222 Query 42607 ATTCCAGATATCATGATATTGAATTGGGAAA 42637 | ||| || || | || || | ||||||| Sbjct 2624221 GTCCCAAATGTCGGGGTACTGGA-TGGGAAA 2624192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671121733602320