Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5 197 2e-45 seq8 131 2e-25 seq4 102 1e-16 >seq5 Length=15459558 Score = 197 bits (218), Expect = 2e-45 Identities = 577/875 (66%), Gaps = 33/875 (4%) Strand=Plus/Plus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||||||| ||| | ||||||||||| | ||||| | || | ||||| |||||| Sbjct 2624192 TTTCCCATCCAGTACCCCGACATTTGGGACAAATACAAGCAAGCGGAAGCCTCGTTTTGG 2624251 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGA---CT 125114 ||| |||||| || ||| |||| || || || |||| ||| ||| ||| || Sbjct 2624252 ACGACCGAAGAAGTAGATTTGTCGAAAGATTTGGACGACTGGAAGAACAAACTGAATTCT 2624311 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||| || | || || |||||| || | || || || || | ||| || |||||| Sbjct 2624312 GA---TGAACGCTACTTCATTTCGCACGTTCTTGCATTTTTCGCAGCCTCTGACGGAATC 2624368 Query 125175 GTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-T 125232 |||||||| || || || || | | ||| || ||| || | | || | ||| | Sbjct 2624369 GTCAACGAAAACCTCGTCGAGA-GGTTCAGCCAGGAGGTGCAAGTGACCGAAG-CTCGCT 2624426 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 |||||||||| ||||||||| ||||| ||| | || ||||| |||||| | ||| Sbjct 2624427 GCTTTTACGGGTTCCAAATCGCTATTGAAAACATCCATTCGGAGATGTACAGCATGTTGA 2624486 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGG 125352 | || | ||||||| || || || || | | | || || || ||||| ||| Sbjct 2624487 TCGAAACGTACATTTCTGAGCCCCAGGAGAAGGAGTTCTTGTTCAATGCGATCGAGACGC 2624546 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTT 125412 |||| | | | || ||||| | |||| | | |||||| | | | || | Sbjct 2624547 TGCCCTGTGTTAAGAAGAAGGCCGACTGGGCCTTGCTGTGGATAAACAGCAAGAACGCGA 2624606 Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTT 125472 | | | ||| || | ||||| || |||||||| || || || ||||| || || || | Sbjct 2624607 CTTTTGGCGAACGAATCGTGGCGTTTGCCGCCGTCGAAGGGATTTTCTTCTCTGGCAGCT 2624666 Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT---- 125528 |||| | || || ||||| || ||||| || ||||| || || |||| | Sbjct 2624667 TTGCTTCGATTTTCTGGCTTAAAAAGCGGAATCTTATGCCAGGTCT----CACATTTTCC 2624722 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCG 125587 || || | || || | |||||||||||||| || || |||||| | | |||| || Sbjct 2624723 AATGAACTGATTTCGAGGGACGAGGGCCTACATTGCGATTTTGCCTGTTTGATGTTCTCT 2624782 Query 125588 CAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAA--CATTGTAACC 125645 || || || | || || | |||| | ||| | | |||| |||| | Sbjct 2624783 CA-----CTTGGTGCAGA-AGCCG-TCCA---AAGAACGGAT--TCAAAGCATTATCCAA 2624830 Query 125646 GATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGC 125705 || || || | || || | || || | || ||| | |||| |||||||||||||| Sbjct 2624831 GACGCGGTCAAAATCGAGAAGGAATTCTTGACTGAAGCTTTACCAGTCAGCATGATTGGA 2624890 Query 125706 ATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAG 125765 ||||||||| | |||||| | ||||| || |||||||| || | | || |||| Sbjct 2624891 ATGAACTGCGCTTTGATGTGCCAATACATCGAATTTGTGGCCGACAGATTGTTGGGCGAG 2624950 Query 125766 TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA 125825 ||| || || || |||||| | ||||||| || ||||||||||| | || || Sbjct 2624951 TTGGGGTGCGAGAAAATCTACAACTCACAGAATCCGTTCGATTTCATGACGATTATTTCC 2625010 Query 125826 CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGT 125860 || || ||||| || || || |||||||| || Sbjct 2625011 AACGAAGGCAAGACGAATTTCTTTGAGAAGAAAGT 2625045 >seq8 Length=14581690 Score = 131 bits (144), Expect = 2e-25 Identities = 198/282 (70%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGT 127160 ||| ||| | |||||||| ||||||||||| |||| | | |||||||||| || ||| | Sbjct 223906 TTTTCGGAAGAAGATGACACCGGCTCGAGGTCCTCGCAAACTCTTGTGCGTGGTGGTGCT 223847 Query 127161 CACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAAT 127220 || | ||| || || ||||| | || |||| | | |||| || || | ||| Sbjct 223846 GACGACGTCGGCGTATTCGAAGGGACTTGGGGTGACGCCGGCAGCAACTAAACCGGAAAT 223787 Query 127221 GTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCT 127280 ||| || || |||||||| || ||| ||| || | | | |||||| ||||| ||| | Sbjct 223786 GTGGGCCATGTCGGCCATGAGGTAGGCACCGACTTCGTTGCAAATCTCGCGGAAACGTTT 223727 Query 127281 ATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAG 127340 ||||||| | || | ||||||||| | ||||| || || | | ||||||||||| Sbjct 223726 GTAGTCCAGAGGACGGGAGTAGCAACTGATACCGGCGATAATAATACGGGGTTTGAATAG 223667 Query 127341 ATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGT 127382 | |||| | | ||| || | | ||||||| ||| || || Sbjct 223666 ACGGGCAGTTTTGGCGAGCTGCTCGTAGTCGATGAGGCCGGT 223625 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 49796 ACCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCGAG 49855 ||||| ||||| ||||| | || |||||||||||||||||||| || | || ||||| Sbjct 5940466 ACCGTAGAGCCCACCATGGTCCTCTACATGATGGCCTTCATGACCACGTCCGTGGTCGAG 5940525 Query 49856 CAGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGG-CTACTCGCCAGAGGTGTG 49914 ||||| || | |||| || |||||||| |||||||| || || |||| | | || Sbjct 5940526 CAGGCCTTCTTCGTGAACAAAGCGTGCCGTGTCAACCACGGCCTTAACGCCTCA-ATTTG 5940584 Query 49915 CCACAACATTAGCCAGTACGATGACATCAACAACCGAGTCCAGCAGACTGTGTCTACATT 49974 | ||||| | | | ||||||| || ||||||| |||||| ||| || || || Sbjct 5940585 CGACAACCTCACCGAGTACGAAGAGCTCAACAAGGAGGTCCAGGTGACCGTCTCGGACTT 5940644 Query 49975 TCATCAGTGGAACGGTGTAGCCAGTCATGTGGTGCCCTTTATATTGGC 50022 || || |||| || || | || ||||||||| | || |||| Sbjct 5940645 CCACTTGTACAACGACGTGGCGGGCCACGTGGTGCCCATCATTCTGGC 5940692 >seq4 Length=12290766 Score = 102 bits (112), Expect = 1e-16 Identities = 303/466 (65%), Gaps = 6/466 (1%) Strand=Plus/Plus Query 97798 TGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGAATCTTTTGAAC 97857 |||| || |||||||||||| | ||| ||||| | || || ||| |||||| |||| Sbjct 1759174 TGGCTCCAATGCCCACGGCTTCGACTGCCCAAATTTTGGGTAATAATGAATCGACCGAAC 1759233 Query 97858 CGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCAATTGACCAACG 97917 ||| ||| || || || || ||| || |||||| ||||||||| | || Sbjct 1759234 CGTACACTTCTAATATCTATGTGAGGCGGGTGTTGTCTGGGGAGTTTCAAGTCGTGAATC 1759293 Query 97918 TGCACTTGGTTCGAGACTTG---GAACGGCTCAATCTGTGGAACGATGACATGGCCCAGT 97974 |||| || | || ||| || || || ||| ||||| ||| | Sbjct 1759294 AGCACCTGCTGAAGGATTTGACTGAGAGGGGG---CTTTGGGACGATACGATGAAGAATC 1759350 Query 97975 TGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTTGCGCA 98034 ||| || || |||| || |||||||||||| | || || || || ||| Sbjct 1759351 AGATTATTGCGAATTATGGTTCGATTCAAAACATTCCGGGGATTCCCGACGATTTGAAAC 1759410 Query 98035 GAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACA 98094 | | || || || |||||||||||| || || | || |||||||| || || | Sbjct 1759411 AACTGTATAAAACAGTCTGGGAGATTTCGCAGAAAGTTATTATTGATATGGCGGCTGATA 1759470 Query 98095 GAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACA 98154 |||| | | |||||||||||||| ||| | ||| | | |||| | || | || Sbjct 1759471 GAGGCGCGTTTATTGACCAGAGTCAGTCGATGAATATTCATATTGCGGCCCCGAATTATG 1759530 Query 98155 GTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACT 98214 | ||| |||| || || || |||| ||| | ||||| | ||||| || ||||||| Sbjct 1759531 GGGTCATGTCTTCCATGCATTTCTACGGGTGGGATAAGGGTTTAAAGACAGGGATGTACT 1759590 Query 98215 ATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGA 98260 || | || || || ||||| | ||| |||| | ||| || ||||| Sbjct 1759591 ATTTAAGGACGAAACCGGCCGCTAATCCCATTCAATTCACAGTGGA 1759636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741039913934320