Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq5 197 2e-45
seq8 131 2e-25
seq4 102 1e-16
>seq5
Length=15459558
Score = 197 bits (218), Expect = 2e-45
Identities = 577/875 (66%), Gaps = 33/875 (4%)
Strand=Plus/Plus
Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057
||||||||| ||| | ||||||||||| | ||||| | || | ||||| ||||||
Sbjct 2624192 TTTCCCATCCAGTACCCCGACATTTGGGACAAATACAAGCAAGCGGAAGCCTCGTTTTGG 2624251
Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGA---CT 125114
||| |||||| || ||| |||| || || || |||| ||| ||| ||| ||
Sbjct 2624252 ACGACCGAAGAAGTAGATTTGTCGAAAGATTTGGACGACTGGAAGAACAAACTGAATTCT 2624311
Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174
|| ||| || | || || |||||| || | || || || || | ||| || ||||||
Sbjct 2624312 GA---TGAACGCTACTTCATTTCGCACGTTCTTGCATTTTTCGCAGCCTCTGACGGAATC 2624368
Query 125175 GTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-T 125232
|||||||| || || || || | | ||| || ||| || | | || | ||| |
Sbjct 2624369 GTCAACGAAAACCTCGTCGAGA-GGTTCAGCCAGGAGGTGCAAGTGACCGAAG-CTCGCT 2624426
Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292
|||||||||| ||||||||| ||||| ||| | || ||||| |||||| | |||
Sbjct 2624427 GCTTTTACGGGTTCCAAATCGCTATTGAAAACATCCATTCGGAGATGTACAGCATGTTGA 2624486
Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGG 125352
| || | ||||||| || || || || | | | || || || ||||| |||
Sbjct 2624487 TCGAAACGTACATTTCTGAGCCCCAGGAGAAGGAGTTCTTGTTCAATGCGATCGAGACGC 2624546
Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTT 125412
|||| | | | || ||||| | |||| | | |||||| | | | || |
Sbjct 2624547 TGCCCTGTGTTAAGAAGAAGGCCGACTGGGCCTTGCTGTGGATAAACAGCAAGAACGCGA 2624606
Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTT 125472
| | | ||| || | ||||| || |||||||| || || || ||||| || || || |
Sbjct 2624607 CTTTTGGCGAACGAATCGTGGCGTTTGCCGCCGTCGAAGGGATTTTCTTCTCTGGCAGCT 2624666
Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT---- 125528
|||| | || || ||||| || ||||| || ||||| || || |||| |
Sbjct 2624667 TTGCTTCGATTTTCTGGCTTAAAAAGCGGAATCTTATGCCAGGTCT----CACATTTTCC 2624722
Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCG 125587
|| || | || || | |||||||||||||| || || |||||| | | |||| ||
Sbjct 2624723 AATGAACTGATTTCGAGGGACGAGGGCCTACATTGCGATTTTGCCTGTTTGATGTTCTCT 2624782
Query 125588 CAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAA--CATTGTAACC 125645
|| || || | || || | |||| | ||| | | |||| |||| |
Sbjct 2624783 CA-----CTTGGTGCAGA-AGCCG-TCCA---AAGAACGGAT--TCAAAGCATTATCCAA 2624830
Query 125646 GATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGC 125705
|| || || | || || | || || | || ||| | |||| ||||||||||||||
Sbjct 2624831 GACGCGGTCAAAATCGAGAAGGAATTCTTGACTGAAGCTTTACCAGTCAGCATGATTGGA 2624890
Query 125706 ATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAG 125765
||||||||| | |||||| | ||||| || |||||||| || | | || ||||
Sbjct 2624891 ATGAACTGCGCTTTGATGTGCCAATACATCGAATTTGTGGCCGACAGATTGTTGGGCGAG 2624950
Query 125766 TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA 125825
||| || || || |||||| | ||||||| || ||||||||||| | || ||
Sbjct 2624951 TTGGGGTGCGAGAAAATCTACAACTCACAGAATCCGTTCGATTTCATGACGATTATTTCC 2625010
Query 125826 CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGT 125860
|| || ||||| || || || |||||||| ||
Sbjct 2625011 AACGAAGGCAAGACGAATTTCTTTGAGAAGAAAGT 2625045
>seq8
Length=14581690
Score = 131 bits (144), Expect = 2e-25
Identities = 198/282 (70%), Gaps = 0/282 (0%)
Strand=Plus/Minus
Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGT 127160
||| ||| | |||||||| ||||||||||| |||| | | |||||||||| || ||| |
Sbjct 223906 TTTTCGGAAGAAGATGACACCGGCTCGAGGTCCTCGCAAACTCTTGTGCGTGGTGGTGCT 223847
Query 127161 CACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAAT 127220
|| | ||| || || ||||| | || |||| | | |||| || || | |||
Sbjct 223846 GACGACGTCGGCGTATTCGAAGGGACTTGGGGTGACGCCGGCAGCAACTAAACCGGAAAT 223787
Query 127221 GTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCT 127280
||| || || |||||||| || ||| ||| || | | | |||||| ||||| ||| |
Sbjct 223786 GTGGGCCATGTCGGCCATGAGGTAGGCACCGACTTCGTTGCAAATCTCGCGGAAACGTTT 223727
Query 127281 ATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAG 127340
||||||| | || | ||||||||| | ||||| || || | | |||||||||||
Sbjct 223726 GTAGTCCAGAGGACGGGAGTAGCAACTGATACCGGCGATAATAATACGGGGTTTGAATAG 223667
Query 127341 ATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGT 127382
| |||| | | ||| || | | ||||||| ||| || ||
Sbjct 223666 ACGGGCAGTTTTGGCGAGCTGCTCGTAGTCGATGAGGCCGGT 223625
Score = 102 bits (112), Expect = 1e-16
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 49796 ACCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCGAG 49855
||||| ||||| ||||| | || |||||||||||||||||||| || | || |||||
Sbjct 5940466 ACCGTAGAGCCCACCATGGTCCTCTACATGATGGCCTTCATGACCACGTCCGTGGTCGAG 5940525
Query 49856 CAGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGG-CTACTCGCCAGAGGTGTG 49914
||||| || | |||| || |||||||| |||||||| || || |||| | | ||
Sbjct 5940526 CAGGCCTTCTTCGTGAACAAAGCGTGCCGTGTCAACCACGGCCTTAACGCCTCA-ATTTG 5940584
Query 49915 CCACAACATTAGCCAGTACGATGACATCAACAACCGAGTCCAGCAGACTGTGTCTACATT 49974
| ||||| | | | ||||||| || ||||||| |||||| ||| || || ||
Sbjct 5940585 CGACAACCTCACCGAGTACGAAGAGCTCAACAAGGAGGTCCAGGTGACCGTCTCGGACTT 5940644
Query 49975 TCATCAGTGGAACGGTGTAGCCAGTCATGTGGTGCCCTTTATATTGGC 50022
|| || |||| || || | || ||||||||| | || ||||
Sbjct 5940645 CCACTTGTACAACGACGTGGCGGGCCACGTGGTGCCCATCATTCTGGC 5940692
>seq4
Length=12290766
Score = 102 bits (112), Expect = 1e-16
Identities = 303/466 (65%), Gaps = 6/466 (1%)
Strand=Plus/Plus
Query 97798 TGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGAATCTTTTGAAC 97857
|||| || |||||||||||| | ||| ||||| | || || ||| |||||| ||||
Sbjct 1759174 TGGCTCCAATGCCCACGGCTTCGACTGCCCAAATTTTGGGTAATAATGAATCGACCGAAC 1759233
Query 97858 CGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCAATTGACCAACG 97917
||| ||| || || || || ||| || |||||| ||||||||| | ||
Sbjct 1759234 CGTACACTTCTAATATCTATGTGAGGCGGGTGTTGTCTGGGGAGTTTCAAGTCGTGAATC 1759293
Query 97918 TGCACTTGGTTCGAGACTTG---GAACGGCTCAATCTGTGGAACGATGACATGGCCCAGT 97974
|||| || | || ||| || || || ||| ||||| ||| |
Sbjct 1759294 AGCACCTGCTGAAGGATTTGACTGAGAGGGGG---CTTTGGGACGATACGATGAAGAATC 1759350
Query 97975 TGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTTGCGCA 98034
||| || || |||| || |||||||||||| | || || || || |||
Sbjct 1759351 AGATTATTGCGAATTATGGTTCGATTCAAAACATTCCGGGGATTCCCGACGATTTGAAAC 1759410
Query 98035 GAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACA 98094
| | || || || |||||||||||| || || | || |||||||| || || |
Sbjct 1759411 AACTGTATAAAACAGTCTGGGAGATTTCGCAGAAAGTTATTATTGATATGGCGGCTGATA 1759470
Query 98095 GAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACA 98154
|||| | | |||||||||||||| ||| | ||| | | |||| | || | ||
Sbjct 1759471 GAGGCGCGTTTATTGACCAGAGTCAGTCGATGAATATTCATATTGCGGCCCCGAATTATG 1759530
Query 98155 GTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACT 98214
| ||| |||| || || || |||| ||| | ||||| | ||||| || |||||||
Sbjct 1759531 GGGTCATGTCTTCCATGCATTTCTACGGGTGGGATAAGGGTTTAAAGACAGGGATGTACT 1759590
Query 98215 ATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGA 98260
|| | || || || ||||| | ||| |||| | ||| || |||||
Sbjct 1759591 ATTTAAGGACGAAACCGGCCGCTAATCCCATTCAATTCACAGTGGA 1759636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741039913934320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |