Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq7 138 8e-28
seq4 129 4e-25
seq2 100 2e-16
>seq7
Length=16482863
Score = 138 bits (152), Expect = 8e-28
Identities = 168/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
||||||||| | | || || || || |||||||| |||||||| || ||||| |||
Sbjct 10793614 TGCCACCTCGGAGACGCAACACCAAGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCGG 10793673
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
||| | | ||||||| | |||||| |||||| | ||||| | ||||||||| ||
Sbjct 10793674 AAAGAGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGTG 10793733
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
| || ||||| ||||| || ||| ||| ||| | || |||||||| | ||| |
Sbjct 10793734 GGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTATCAGAAGGTTCGA 10793793
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
| || ||||| ||||| || || ||||| ||||| || |||||||||||
Sbjct 10793794 CCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTGACGAAAATTTGCAT 10793842
Score = 125 bits (138), Expect = 5e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
||||||||| | | || || || || || ||||| || || || || |||||||||
Sbjct 10792930 TGCCACCTCGGAGACGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGG 10792989
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
||| | | ||||||||| |||||| ||||| | ||||| | ||||||||| ||
Sbjct 10792990 AAAGAGTACGGCCGTCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTG 10793049
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
| || || |||||||| ||| || ||| || | || || ||||| | ||| |
Sbjct 10793050 GGATACCCTCTTTGTCTTGAATCTTAGCCTTGACGTTCTCAATTGTATCAGAAGGTTCGA 10793109
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
| || | ||| |||||||| || ||||||||||| || |||||||||||
Sbjct 10793110 CTTCCAGGGTGATGGTTTTGCCAGTCAGAGTTTTAACGAAAATTTGCAT 10793158
Score = 120 bits (132), Expect = 2e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
||||||||||||| | || || || ||||||||||| || || || |||||||||||
Sbjct 10793842 TGCCACCTCTCAAACGCAATACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCTG 10793901
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
|| | | | | ||||||| |||||| || || | ||||| | ||||||||| ||
Sbjct 10793902 AGAGGGTACGCCCATCTTCTAGTTGTTTCCCGGCAAAGATCAATCTTTGTTGGTCTGGTG 10793961
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
| || ||||| || || ||| || ||| || |||| || || ||| | ||| |
Sbjct 10793962 GGATCCCTTCCTTATCCTGAATCTTAGCCTTGACGTTTTCAATCGTGTCGGAAGGTTCGA 10794021
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
| || || ||||||||||| || |||| || || || || || |||||
Sbjct 10794022 CTTCCAAAGTAATGGTTTTCCCAGTCAAGGTCTTGACGAAGATCTGCAT 10794070
Score = 120 bits (132), Expect = 2e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| || |||||||| ||||| || || || || || || || || |||||||| ||
Sbjct 10794300 CCGCCCCTCAATCTCAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAC 10794359
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | | ||||||| | ||||||||||||| | ||||||||||| ||||| ||
Sbjct 10794360 AAAGTGCGTCCGTCTTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGG 10794419
Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
|| ||||| ||||| || || ||| || || |||| ||||||||| || ||
Sbjct 10794420 ATACCTTCCTTGTCCTGGATCTTAGCT-TTGACGTTTTCGATGGTATCGGAGGGCTCGAC 10794478
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| ||||| ||||||||||| |||| ||| || || || || |||||
Sbjct 10794479 CTCCAAGGTGATGGTTTTACCAGTCAAAGTCTTCACGAAGATCTGCAT 10794526
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/215 (71%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210
||| |||| |||||| ||||| || ||||| || ||||| || || | | | ||
Sbjct 10792490 TAAGACTAGATGAAGAGTGGATTCCTTTTGGATATTGTAGTCCGAAAGTGTGCGACCATC 10792549
Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270
||| || ||||| || || | ||||| | ||| ||||| ||||| ||||| || ||
Sbjct 10792550 TTCCAACTGTTTTCCCGCAAAGATCAATCTTTGCTGGTCTGGGGGAATACCTTCCTTATC 10792609
Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTT-TCTACATCTAAGGTAATGG 15329
||||||| ||| ||| |||| || || || | || || || || || ||||| |
Sbjct 10792610 TTGAATTTTGGCCTTCACATTTTCAATCGTGTC-CGATGGCTCAACTTCCAACGTAATTG 10792668
Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|||| || |||| || || || ||||||||||||
Sbjct 10792669 TTTTCCCAGTCAACGTCTTCACGAAAATTTGCATA 10792703
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211
|| || || || ||||| || ||||| || |||||||| ||| || | | | ||
Sbjct 10793403 AACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGACCATCC 10793462
Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271
|| || |||||||| ||| | ||||| | ||| || || ||||| || ||||||||
Sbjct 10793463 TCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGAATCCCCTCTTTGTCC 10793522
Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331
|||||| ||| || |||| || || || | ||| || || | || || |||
Sbjct 10793523 TGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACTTCAAGAGTGATCGTT 10793582
Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || |||| ||| || || |||||||||||
Sbjct 10793583 TTTCCAGTCAAAGTCTTCACGAAAATTTGCAT 10793614
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
|||| || |||| | ||||| || ||||||||||| || || || ||||||||||||
Sbjct 10794070 TGCCTCCCCTCAGACGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGG 10794129
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
| | | ||||||| | |||||| |||||| | |||||||| ||||| || |
Sbjct 10794130 ACAAGGTGCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAG 10794189
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
| || || || ||||| || ||| || || | || || ||||| || |
Sbjct 10794190 GGATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAA 10794249
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
| || | || ||||| || || || || || || || || |||||||||
Sbjct 10794250 CTTCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCATA 10794299
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211
|| |||||||| ||||| || |||||||| || || || || || | | | | |||
Sbjct 10792719 AATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGACAGGGTGCGCCCATCT 10792778
Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271
|| | |||||||||||| | ||||| | || || || ||||| |||||||| ||
Sbjct 10792779 TCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTATCC 10792838
Query 15272 CAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330
||||| ||| || ||| | || || || || |||||| || || || || ||
Sbjct 10792839 TGGATTTTAGCT-TTAACATTCTCAATTGTGTCTGAGGGTTCTACTTCCAAAGTGATCGT 10792897
Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || |||| || || || |||||||||||
Sbjct 10792898 CTTTCCCGTCAAGGTCTTCACGAAAATTTGCAT 10792930
>seq4
Length=12290766
Score = 129 bits (142), Expect = 4e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||||| || | |||||||||||||||||||| || || || ||||||||||||
Sbjct 488939 CCACCTCGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 488998
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | | | || || | ||||| || || | |||||||| ||||| ||| |||
Sbjct 488999 AAAGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGA 489058
Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
|| ||||| ||||| |||||| ||| || ||| |||| ||||| || | || ||
Sbjct 489059 ATGCCTTCCTTGTCCTGAATTTTCGCT-TTGACATTTTCGATGGTGTCTGAAGGCTCGAC 489117
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| | || ||||| || || ||||||||||| || |||||||||||
Sbjct 489118 CTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165
>seq2
Length=15265516
Score = 100 bits (110), Expect = 2e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195
||||||||| | ||||||||||| ||||||||||| || || || || |||||||||
Sbjct 12970352 GCCACCTCTGAGTCTTAAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGA 12970293
Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255
|| | | | || || | ||||| || ||| | || | |||||| || || ||
Sbjct 12970292 GAGGGTACGTCCATCCTCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGG 12970233
Query 15256 AATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
||| || ||||| || ||| || ||| || ||| | || || ||||| || |
Sbjct 12970232 AATCCCCTCTTTATCCTGAATCTTAGCT-TTCACATTCTCGATAGTATCTGACGGCTCGA 12970174
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
| || | ||| ||||| || || ||||| ||||| || ||||| |||||
Sbjct 12970173 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTAACGAAAATCTGCAT 12970125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362170009929162
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