Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq7 138 8e-28 seq4 129 4e-25 seq2 100 2e-16 >seq7 Length=16482863 Score = 138 bits (152), Expect = 8e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||||| | | || || || || |||||||| |||||||| || ||||| ||| Sbjct 10793614 TGCCACCTCGGAGACGCAACACCAAGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCGG 10793673 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | ||||||| | |||||| |||||| | ||||| | ||||||||| || Sbjct 10793674 AAAGAGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGTG 10793733 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || ||||| ||||| || ||| ||| ||| | || |||||||| | ||| | Sbjct 10793734 GGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTATCAGAAGGTTCGA 10793793 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || ||||| ||||| || || ||||| ||||| || ||||||||||| Sbjct 10793794 CCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTGACGAAAATTTGCAT 10793842 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||||| | | || || || || || ||||| || || || || ||||||||| Sbjct 10792930 TGCCACCTCGGAGACGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGG 10792989 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | ||||||||| |||||| ||||| | ||||| | ||||||||| || Sbjct 10792990 AAAGAGTACGGCCGTCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTG 10793049 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || || |||||||| ||| || ||| || | || || ||||| | ||| | Sbjct 10793050 GGATACCCTCTTTGTCTTGAATCTTAGCCTTGACGTTCTCAATTGTATCAGAAGGTTCGA 10793109 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||| |||||||| || ||||||||||| || ||||||||||| Sbjct 10793110 CTTCCAGGGTGATGGTTTTGCCAGTCAGAGTTTTAACGAAAATTTGCAT 10793158 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||||||||| | || || || ||||||||||| || || || ||||||||||| Sbjct 10793842 TGCCACCTCTCAAACGCAATACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCTG 10793901 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | | ||||||| |||||| || || | ||||| | ||||||||| || Sbjct 10793902 AGAGGGTACGCCCATCTTCTAGTTGTTTCCCGGCAAAGATCAATCTTTGTTGGTCTGGTG 10793961 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || ||||| || || ||| || ||| || |||| || || ||| | ||| | Sbjct 10793962 GGATCCCTTCCTTATCCTGAATCTTAGCCTTGACGTTTTCAATCGTGTCGGAAGGTTCGA 10794021 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || ||||||||||| || |||| || || || || || ||||| Sbjct 10794022 CTTCCAAAGTAATGGTTTTCCCAGTCAAGGTCTTGACGAAGATCTGCAT 10794070 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || |||||||| ||||| || || || || || || || || |||||||| || Sbjct 10794300 CCGCCCCTCAATCTCAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAC 10794359 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||||| | ||||||||||||| | ||||||||||| ||||| || Sbjct 10794360 AAAGTGCGTCCGTCTTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGG 10794419 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| || || ||| || || |||| ||||||||| || || Sbjct 10794420 ATACCTTCCTTGTCCTGGATCTTAGCT-TTGACGTTTTCGATGGTATCGGAGGGCTCGAC 10794478 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| ||||||||||| |||| ||| || || || || ||||| Sbjct 10794479 CTCCAAGGTGATGGTTTTACCAGTCAAAGTCTTCACGAAGATCTGCAT 10794526 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| |||| |||||| ||||| || ||||| || ||||| || || | | | || Sbjct 10792490 TAAGACTAGATGAAGAGTGGATTCCTTTTGGATATTGTAGTCCGAAAGTGTGCGACCATC 10792549 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| || ||||| || || | ||||| | ||| ||||| ||||| ||||| || || Sbjct 10792550 TTCCAACTGTTTTCCCGCAAAGATCAATCTTTGCTGGTCTGGGGGAATACCTTCCTTATC 10792609 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTT-TCTACATCTAAGGTAATGG 15329 ||||||| ||| ||| |||| || || || | || || || || || ||||| | Sbjct 10792610 TTGAATTTTGGCCTTCACATTTTCAATCGTGTC-CGATGGCTCAACTTCCAACGTAATTG 10792668 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || |||| || || || |||||||||||| Sbjct 10792669 TTTTCCCAGTCAACGTCTTCACGAAAATTTGCATA 10792703 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || ||||| || ||||| || |||||||| ||| || | | | || Sbjct 10793403 AACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGACCATCC 10793462 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || |||||||| ||| | ||||| | ||| || || ||||| || |||||||| Sbjct 10793463 TCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGAATCCCCTCTTTGTCC 10793522 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| ||| || |||| || || || | ||| || || | || || ||| Sbjct 10793523 TGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACTTCAAGAGTGATCGTT 10793582 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||| ||| || || ||||||||||| Sbjct 10793583 TTTCCAGTCAAAGTCTTCACGAAAATTTGCAT 10793614 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| || |||| | ||||| || ||||||||||| || || || |||||||||||| Sbjct 10794070 TGCCTCCCCTCAGACGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGG 10794129 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | | | ||||||| | |||||| |||||| | |||||||| ||||| || | Sbjct 10794130 ACAAGGTGCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAG 10794189 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || || || ||||| || ||| || || | || || ||||| || | Sbjct 10794190 GGATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAA 10794249 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || | || ||||| || || || || || || || || ||||||||| Sbjct 10794250 CTTCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCATA 10794299 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || |||||||| ||||| || |||||||| || || || || || | | | | ||| Sbjct 10792719 AATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGACAGGGTGCGCCCATCT 10792778 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | |||||||||||| | ||||| | || || || ||||| |||||||| || Sbjct 10792779 TCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTATCC 10792838 Query 15272 CAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||||| ||| || ||| | || || || || |||||| || || || || || Sbjct 10792839 TGGATTTTAGCT-TTAACATTCTCAATTGTGTCTGAGGGTTCTACTTCCAAAGTGATCGT 10792897 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||| || || || ||||||||||| Sbjct 10792898 CTTTCCCGTCAAGGTCTTCACGAAAATTTGCAT 10792930 >seq4 Length=12290766 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | |||||||||||||||||||| || || || |||||||||||| Sbjct 488939 CCACCTCGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 488998 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | || || | ||||| || || | |||||||| ||||| ||| ||| Sbjct 488999 AAAGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGA 489058 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| |||||| ||| || ||| |||| ||||| || | || || Sbjct 489059 ATGCCTTCCTTGTCCTGAATTTTCGCT-TTGACATTTTCGATGGTGTCTGAAGGCTCGAC 489117 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| || || ||||||||||| || ||||||||||| Sbjct 489118 CTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165 >seq2 Length=15265516 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 ||||||||| | ||||||||||| ||||||||||| || || || || ||||||||| Sbjct 12970352 GCCACCTCTGAGTCTTAAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGA 12970293 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | || || | ||||| || ||| | || | |||||| || || || Sbjct 12970292 GAGGGTACGTCCATCCTCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGG 12970233 Query 15256 AATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 ||| || ||||| || ||| || ||| || ||| | || || ||||| || | Sbjct 12970232 AATCCCCTCTTTATCCTGAATCTTAGCT-TTCACATTCTCGATAGTATCTGACGGCTCGA 12970174 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||| ||||| || || ||||| ||||| || ||||| ||||| Sbjct 12970173 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTAACGAAAATCTGCAT 12970125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362170009929162