Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq4 89.7 4e-13 seq7 86.0 5e-12 >seq4 Length=12290766 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || ||||| || || |||||||| | || || | |||||||||||||||||| Sbjct 488969 GTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTACCC 489028 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| | | ||| ||||| ||| | ||| || ||||| ||||||| ||| Sbjct 489029 GCAAAAATCAAACGCTGTTGATCGGGGGGAATGCCTTCCTTGTCCTGAATTTTCGCTTTG 489088 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| || || |||||| || | || ||||| || || || | |||| Sbjct 489089 ACATTTTCGATGGTGTCTGAAGGCTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTT 489148 Query 19025 TTGACAAAAATTTGCAT 19041 || || ||||||||||| Sbjct 489149 TTCACGAAAATTTGCAT 489165 >seq7 Length=16482863 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| ||| | || ||||| || || || ||||| || | | ||| | ||| Sbjct 10793403 AACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGACCATCC 10793462 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||| |||||| || || |||| | ||| |||||||| ||| | ||||||||||| Sbjct 10793463 TCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGAATCCCCTCTTTGTCC 10793522 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||||||| || || | ||| || || ||| || ||| | || || ||| Sbjct 10793523 TGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACTTCAAGAGTGATCGTT 10793582 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || ||||| || || ||||||||||| Sbjct 10793583 TTTCCAGTCAAAGTCTTCACGAAAATTTGCAT 10793614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414562280474308