Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq4 89.7 4e-13
seq7 86.0 5e-12
>seq4
Length=12290766
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| || ||||| || || |||||||| | || || | ||||||||||||||||||
Sbjct 488969 GTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTACCC 489028
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| |||| | | ||| ||||| ||| | ||| || ||||| ||||||| |||
Sbjct 489029 GCAAAAATCAAACGCTGTTGATCGGGGGGAATGCCTTCCTTGTCCTGAATTTTCGCTTTG 489088
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | ||| || || |||||| || | || ||||| || || || | ||||
Sbjct 489089 ACATTTTCGATGGTGTCTGAAGGCTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTT 489148
Query 19025 TTGACAAAAATTTGCAT 19041
|| || |||||||||||
Sbjct 489149 TTCACGAAAATTTGCAT 489165
>seq7
Length=16482863
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889
||||||| ||| | || ||||| || || || ||||| || | | ||| | |||
Sbjct 10793403 AACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGACCATCC 10793462
Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949
|||| |||||| || || |||| | ||| |||||||| ||| | |||||||||||
Sbjct 10793463 TCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGAATCCCCTCTTTGTCC 10793522
Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009
||||||| || || | ||| || || ||| || ||| | || || |||
Sbjct 10793523 TGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACTTCAAGAGTGATCGTT 10793582
Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || || ||||| || || |||||||||||
Sbjct 10793583 TTTCCAGTCAAAGTCTTCACGAAAATTTGCAT 10793614
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414562280474308
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |