Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq7 100 2e-16
seq4 95.1 8e-15
>seq7
Length=16482863
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
|||||| || || | ||| ||||| || | ||||| || || || || ||||| |||||
Sbjct 10794299 ACCGCCCCTCAATCTCAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGA 10794358
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
|||| || || ||| || | ||| || ||| || || |||||||||||||| | |||
Sbjct 10794359 CAAAGTGCGTCCGTCTTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGG 10794418
Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321
|| ||||| || || ||| ||| || ||| || || ||| ||| | ||
Sbjct 10794419 GATACCTTCCTTGTCCTGGATCTTAGCTTTGACGTTTTCGATGGTATCGGAGGGCTCGAC 10794478
Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|||| || || ||||| || || | ||| || ||||| || |||||
Sbjct 10794479 CTCCAAGGTGATGGTTTTACCAGTCAAAGTCTTCACGAAGATCTGCAT 10794526
Score = 95.1 bits (104), Expect = 8e-15
Identities = 153/219 (70%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
||||||||||| || | || || || || || ||||||||||| || | | | | |
Sbjct 10792944 CGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAAAGAGTACGGCCG 10793003
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274
|| || | ||| |||||| ||| || || | ||| ||||| | || || || |||||
Sbjct 10793004 TCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCCTCTTTG 10793063
Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| |||| ||| || || | | ||| || || |||| || ||||| ||
Sbjct 10793064 TCTTGAATCTTAGCC---TTGACGTTCTCAATTGTATCAGAAGGTTCGACTTCCAGGGTG 10793120
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|| ||||| || || |||||||| |||||||||||||||
Sbjct 10793121 ATGGTTTTGCCAGTCAGAGTTTTAACGAAAATTTGCATG 10793159
Score = 95.1 bits (104), Expect = 8e-15
Identities = 153/219 (70%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
||||||||||| || | ||||||||||| || || ||||| || || | || |
Sbjct 10793400 CGCAACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGACCA 10793459
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274
|| ||||| || || || || || || | |||||| || | ||| || || |||||
Sbjct 10793460 TCCTCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGAATCCCCTCTTTG 10793519
Query 33275 TCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| || ||||| || || ||| || ||||| |||| || || |||||
Sbjct 10793520 TCCTGAATTTTCGCC---TTCACGTTTTCGATTGTGTCCGAAGGTTCGACTTCAAGAGTG 10793576
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
||||||||||| || | ||| || |||||||||||||||
Sbjct 10793577 ATCGTTTTTCCAGTCAAAGTCTTCACGAAAATTTGCATG 10793615
Score = 91.5 bits (100), Expect = 9e-14
Identities = 160/232 (69%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| |||| | ||||| || ||||| | || || |||||||| ||||| || || ||
Sbjct 10792703 ACCTCCTCGCAGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGA 10792762
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
|| || | || || | ||| || ||| ||| || || | ||||| || | ||
Sbjct 10792763 CAGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGG 10792822
Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318
||||||||||| || | | | || ||| || | | ||| ||||| |||||
Sbjct 10792823 AATGCCTTCTTTATCCTGGATTTTAGC---TTTAACATTCTCAATTGTGTCTGAGGGTTC 10792879
Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|| |||| ||| ||||| |||||||| | || || |||||||||||||||
Sbjct 10792880 TACTTCCAAAGTGATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCATG 10792931
>seq4
Length=12290766
Score = 95.1 bits (104), Expect = 8e-15
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
||||| || ||||| | || || || || || || |||||||| |||||| || ||
Sbjct 488951 CGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCA 489010
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274
|| |||| || || || ||| || ||||| || || || | ||| |||||||| ||
Sbjct 489011 TCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGAATGCCTTCCTTG 489070
Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334
|| ||| | ||| || ||| || ||||| || | || || ||||| ||
Sbjct 489071 TCCTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACCTCAAGAGTGATG 489130
Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || || || |||||||| ||||||||||||||
Sbjct 489131 GTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318769511217636
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |