Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq7 109 4e-19 >seq7 Length=16482863 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||| || | ||| || ||| || ||||| ||||| || || | | || |||| Sbjct 10792490 TAAGACTAGATGAAGAGTGGATTCCTTTTGGATATTGTAGTCCGAAAGTGTGCGACCATC 10792549 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 ||||| |||||||| ||||| ||||| | ||||||||| | || | |||||| ||||| Sbjct 10792550 TTCCAACTGTTTTCCCGCAAAGATCAATCTTTGCTGGTCTGGGGGAATACCTTCCTTATC 10792609 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | |||||| || || | ||| || || | ||||| || || | ||||||||| Sbjct 10792610 TTGAATTTTGGCCTTCACATTTTCAATCGTGTCCGATGGCTCAACTTCCAACGTAATTGT 10792669 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| || || || |||||||| || |||||||| Sbjct 10792670 TTTCCCAGTCAACGTCTTCACGAAAATTTGCAT 10792702 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||| || | || || |||||||| || ||||||||||||||||| || Sbjct 10792703 ACCTCCTCGCAGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGA 10792762 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| || | |||||| || ||||| ||||||| ||||| || |||| Sbjct 10792763 CAGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGG 10792822 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||| ||||| ||| || | ||| || |||| || || || Sbjct 10792823 AATGCCTTCTTTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTAC 10792882 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || || || || || || |||||||| || ||||||||| Sbjct 10792883 TTCCAAAGTGATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCATG 10792931 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GT 43952 ||| || |||||||| || ||||| || ||||| || || || || || || || | Sbjct 10794299 ACCGCCCCTCAATCTCAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGA 10794358 Query 43953 TTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || || || | || || | |||||| || || || ||||| ||||||||||| | | Sbjct 10794359 CAAAGTG-CGTCCGTCTTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGG 10794417 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | |||||| || || || || |||||| | | | ||||| | ||||| | Sbjct 10794418 GGATACCTTCCTTGTCCTGGATCTTAGCTTTGACGTTTTCGATGGTATCGGAGGGCTCGA 10794477 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || || |||||||| || ||||||||||| || || ||||| Sbjct 10794478 CCTCCAAGGTGATGGTTTTACCAGTCAAAGTCTTCACGAAGATCTGCAT 10794526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354768597740136