Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq7 109 4e-19
>seq7
Length=16482863
Score = 109 bits (120), Expect = 4e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968
||| || | ||| || ||| || ||||| ||||| || || | | || ||||
Sbjct 10792490 TAAGACTAGATGAAGAGTGGATTCCTTTTGGATATTGTAGTCCGAAAGTGTGCGACCATC 10792549
Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028
||||| |||||||| ||||| ||||| | ||||||||| | || | |||||| |||||
Sbjct 10792550 TTCCAACTGTTTTCCCGCAAAGATCAATCTTTGCTGGTCTGGGGGAATACCTTCCTTATC 10792609
Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088
| |||||| || || | ||| || || | ||||| || || | |||||||||
Sbjct 10792610 TTGAATTTTGGCCTTCACATTTTCAATCGTGTCCGATGGCTCAACTTCCAACGTAATTGT 10792669
Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
||| || || || |||||||| || ||||||||
Sbjct 10792670 TTTCCCAGTCAACGTCTTCACGAAAATTTGCAT 10792702
Score = 102 bits (112), Expect = 6e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953
|||||||| || | || || |||||||| || ||||||||||||||||| ||
Sbjct 10792703 ACCTCCTCGCAGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGA 10792762
Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013
| ||| |||| || | |||||| || ||||| ||||||| ||||| || ||||
Sbjct 10792763 CAGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGG 10792822
Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073
| ||||||||||| ||||| ||| || | ||| || |||| || || ||
Sbjct 10792823 AATGCCTTCTTTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTAC 10792882
Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122
|| | || || || || || || || |||||||| || |||||||||
Sbjct 10792883 TTCCAAAGTGATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCATG 10792931
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GT 43952
||| || |||||||| || ||||| || ||||| || || || || || || || |
Sbjct 10794299 ACCGCCCCTCAATCTCAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGA 10794358
Query 43953 TTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012
|| || || | || || | |||||| || || || ||||| ||||||||||| | |
Sbjct 10794359 CAAAGTG-CGTCCGTCTTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGG 10794417
Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072
| | |||||| || || || || |||||| | | | ||||| | ||||| |
Sbjct 10794418 GGATACCTTCCTTGTCCTGGATCTTAGCTTTGACGTTTTCGATGGTATCGGAGGGCTCGA 10794477
Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
| || | || || |||||||| || ||||||||||| || || |||||
Sbjct 10794478 CCTCCAAGGTGATGGTTTTACCAGTCAAAGTCTTCACGAAGATCTGCAT 10794526
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354768597740136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |