Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq5 201 1e-46 >seq5 Length=15459558 Score = 201 bits (222), Expect = 1e-46 Identities = 495/744 (67%), Gaps = 14/744 (2%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 || || ||||| | ||| | || ||||| || || || || ||||| |||||| | Sbjct 2625060 TTCTGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTGGAAATAATC 2625001 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979 ||| |||||||| ||||| | || ||| ||| | ||||| || || ||| Sbjct 2625000 GTCATGAAATCGAACGGATTCTGTGAGTTGTAGATTTTCTCGCACCCCAACTCGCCCAAC 2624941 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 |||||||| || ||||| || ||||| || ||| ||| | ||||||||||| || | Sbjct 2624940 AATCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATTCCAATCATG 2624881 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTG---CTTCGATAACT 13096 | || || | |||||| || || || | || || || | || | ||| |||| Sbjct 2624880 CTGACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCTTGGATA--- 2624824 Query 13097 ATGTCTCTTATTACGTTCTCTAATGGA-GGATT-TG--ATAGATGCTTAAACATCATACA 13152 ||| || | | | |||||| |||| || || || | || ||||||| ||| Sbjct 2624823 ATG-CTTTGAATCCGTTCT---TTGGACGGCTTCTGCACCAAGTGAGAGAACATCAAACA 2624768 Query 13153 TGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACC 13212 |||||||| || || | || || || || || || || || |||||||| ||||| Sbjct 2624767 GGCAAAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACC 2624708 Query 13213 CGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTAT 13272 |||||||| || ||||||| ||| || || | |||||| || || || || || Sbjct 2624707 TGGCATAAGATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAAT 2624648 Query 13273 TCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTAT 13332 ||||| || || |||||||| | | | ||| ||| | || || || || | ||| Sbjct 2624647 CCCTTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTGCTGTTTAT 2624588 Query 13333 CCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAA 13392 |||| |||||||| || || | ||||| ||| || | || || || || || Sbjct 2624587 CCACAGCAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGAA 2624528 Query 13393 TAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTC 13452 || | | || |||| || |||| || || || ||||| | ||| ||||| || Sbjct 2624527 CAAGAACTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTGTACATCTC 2624468 Query 13453 TGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTG 13512 ||||| || ||||| || || |||||||| || ||||| || | ||| || | || || Sbjct 2624467 CGAATGGATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCGGTCACTTG 2624408 Query 13513 AACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaa 13572 || || | || || || | | ||||||||| || || |||||| || || || Sbjct 2624407 CACCTCCTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAGGCTGCGAA 2624348 Query 13573 aaaaGCAAGTATGTGCTTAATAAA 13596 ||| ||||| | |||| ||| || Sbjct 2624347 AAATGCAAGAACGTGCGAAATGAA 2624324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430971464090964