Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq5 201 1e-46
>seq5
Length=15459558
Score = 201 bits (222), Expect = 1e-46
Identities = 495/744 (67%), Gaps = 14/744 (2%)
Strand=Plus/Minus
Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919
|| || ||||| | ||| | || ||||| || || || || ||||| |||||| |
Sbjct 2625060 TTCTGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTGGAAATAATC 2625001
Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979
||| |||||||| ||||| | || ||| ||| | ||||| || || |||
Sbjct 2625000 GTCATGAAATCGAACGGATTCTGTGAGTTGTAGATTTTCTCGCACCCCAACTCGCCCAAC 2624941
Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039
|||||||| || ||||| || ||||| || ||| ||| | ||||||||||| || |
Sbjct 2624940 AATCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATTCCAATCATG 2624881
Query 13040 TTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTG---CTTCGATAACT 13096
| || || | |||||| || || || | || || || | || | ||| ||||
Sbjct 2624880 CTGACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCTTGGATA--- 2624824
Query 13097 ATGTCTCTTATTACGTTCTCTAATGGA-GGATT-TG--ATAGATGCTTAAACATCATACA 13152
||| || | | | |||||| |||| || || || | || ||||||| |||
Sbjct 2624823 ATG-CTTTGAATCCGTTCT---TTGGACGGCTTCTGCACCAAGTGAGAGAACATCAAACA 2624768
Query 13153 TGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACC 13212
|||||||| || || | || || || || || || || || |||||||| |||||
Sbjct 2624767 GGCAAAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACC 2624708
Query 13213 CGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTAT 13272
|||||||| || ||||||| ||| || || | |||||| || || || || ||
Sbjct 2624707 TGGCATAAGATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAAT 2624648
Query 13273 TCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTAT 13332
||||| || || |||||||| | | | ||| ||| | || || || || | |||
Sbjct 2624647 CCCTTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTGCTGTTTAT 2624588
Query 13333 CCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAA 13392
|||| |||||||| || || | ||||| ||| || | || || || || ||
Sbjct 2624587 CCACAGCAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGAA 2624528
Query 13393 TAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTC 13452
|| | | || |||| || |||| || || || ||||| | ||| ||||| ||
Sbjct 2624527 CAAGAACTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTGTACATCTC 2624468
Query 13453 TGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTG 13512
||||| || ||||| || || |||||||| || ||||| || | ||| || | || ||
Sbjct 2624467 CGAATGGATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCGGTCACTTG 2624408
Query 13513 AACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaa 13572
|| || | || || || | | ||||||||| || || |||||| || || ||
Sbjct 2624407 CACCTCCTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAGGCTGCGAA 2624348
Query 13573 aaaaGCAAGTATGTGCTTAATAAA 13596
||| ||||| | |||| ||| ||
Sbjct 2624347 AAATGCAAGAACGTGCGAAATGAA 2624324
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430971464090964
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |