Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5 167 5e-36 seq7 154 3e-32 seq2 138 3e-27 >seq5 Length=15459558 Score = 167 bits (184), Expect = 5e-36 Identities = 398/597 (67%), Gaps = 20/597 (3%) Strand=Plus/Plus Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCT 268762 |||||| | ||||| || ||| | || || ||| | ||||| || || | || Sbjct 2624183 TTTGTGGTCTTTCCCATCCAGTACCCCGACATTTGGGACAAATACAAGCAAGCGGAAGCC 2624242 Query 268763 TCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTA 268822 || |||||||| |||||||||||| |||| | || || || ||||| || | Sbjct 2624243 TCGTTTTGGACGACCGAAGAAGTAGATTTGTCGAAAGATTTGGACGACTGGAAGAACAAA 2624302 Query 268823 ---AAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGAT 268879 || | || ||| | || || || | ||||||| ||||| |||| ||| Sbjct 2624303 CTGAATTCTGATGAACGCTACTTCATTTCGCACGTTCTTGCATTTTTCGCAGCCTCTGAC 2624362 Query 268880 GGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCC 268939 || ||||| |||||||| || || |||| |||| | || ||||| || | | ||||| Sbjct 2624363 GGAATCGTCAACGAAAACCTCGTCGAGAGGTTCAGCCAGGAGGTGCAAGTGACCGAAGCT 2624422 Query 268940 AGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTA 268999 | || |||||||| ||||| || ||||| ||||| || ||||| ||||||||||| | Sbjct 2624423 CGCTGCTTTTACGGGTTCCAAATCGCTATTGAAAACATCCATTCGGAGATGTACAGCATG 2624482 Query 269000 TTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATGAGA 269059 || || || || || || ||| | | || ||| || | | || ||| ||| || Sbjct 2624483 TTGATCGAAACGTACATTTCTGAGCCCCAGGAGAAG----GAGT-TCTTGTTCAATGCGA 2624537 Query 269060 -----ACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAA---CG 269111 || || |||||| | || || | || ||||| || |||||||| | Sbjct 2624538 TCGAGACGCTGCCCTGTGTTAAGAAGAAGGCCGACTGGGCCTTGCTGTGGATAAACAGCA 2624597 Query 269112 ATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTT 269171 | | |||| ||| || ||| | | || || |||||||| || ||||| || ||||| | Sbjct 2624598 AGAACGCGACTTTTGGCGAACGAATCGTGGCGTTTGCCGCCGTCGAAGGGATTTTCTTCT 2624657 Query 269172 CGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGG--CCTTATGCCAGGATTAAC 269229 | || ||||| | || || ||| | | ||||| || ||||||||||| | || Sbjct 2624658 CTGGCAGCTTTGCTTCGATTTTCTGGCTTA--AAAAGCGGAATCTTATGCCAGGTCTCAC 2624715 Query 269230 TTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTT 269286 || || || ||| |||| |||||||| || |||| ||||| || || ||||| Sbjct 2624716 ATTTTCCAATGAACTGATTTCGAGGGACGAGGGCCTACATTGCGATTTTGCCTGTTT 2624772 >seq7 Length=16482863 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||||| ||||| || |||||||| |||||||||||||| || || || | || ||||| Sbjct 10792721 TACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGACAGGGTGCGCCCATCTTC 10792780 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 |||||||| |||||||| || | |||||| ||||| ||||| || |||||||||||||| Sbjct 10792781 GAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTATCCTG 10792840 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 || || ||||| ||||| || | || || |||||||| || | || || ||||| Sbjct 10792841 GATTTTAGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTACTTCCAAAGTGATCGTCTT 10792900 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || || || || ||||| Sbjct 10792901 TCCCGTCAAGGTCTTCACGAAAATTTGCAT 10792930 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| || ||||| ||||| || ||||| | |||||||| |||||||||||| Sbjct 10793646 GTGGATTCTTTTTGGATATTGTAGTCGGAAAGAGTACGGCCGTCTTCAAGTTGTTTTCCA 10793705 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | || ||||| || || || || ||||| || || || ||||| || || Sbjct 10793706 GCGAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTTGGCCTTA 10793765 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| |||||| ||||| | || || ||||| ||||| || ||| Sbjct 10793766 ACATTCTCAATGGTATCAGAAGGTTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTT 10793825 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 10793826 TTGACGAAAATTTGCAT 10793842 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| ||||| || || || ||||| | ||||||||||||||||||||| Sbjct 10792962 GTGGATTCCTTCTGGATATTGTAATCGGAAAGAGTACGGCCGTCTTCTAGTTGTTTTCCA 10793021 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | || ||||| || || || || || ||||| || |||||||| || || Sbjct 10793022 GCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCCTCTTTGTCTTGAATCTTAGCCTTG 10793081 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||| |||||| || || || || || || || ||||| || ||| Sbjct 10793082 ACGTTCTCAATTGTATCAGAAGGTTCGACTTCCAGGGTGATGGTTTTGCCAGTCAGAGTT 10793141 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 10793142 TTAACGAAAATTTGCAT 10793158 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || || || || || || | || |||||||||||||| || Sbjct 10793874 GTGGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGCCCATCTTCTAGTTGTTTCCCG 10793933 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | || ||||| || || || || ||||| |||||||||||||| || || Sbjct 10793934 GCAAAGATCAATCTTTGTTGGTCTGGTGGGATCCCTTCCTTATCCTGAATCTTAGCCTTG 10793993 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | || ||| |||||| || || | ||||| || || ||||| | || Sbjct 10793994 ACGTTTTCAATCGTGTCGGAAGGTTCGACTTCCAAAGTAATGGTTTTCCCAGTCAAGGTC 10794053 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 10794054 TTGACGAAGATCTGCAT 10794070 >seq2 Length=15265516 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || | ||||| || | || ||||| ||||| ||||| || || || Sbjct 12970351 CCACCTCTGAGTCTTAAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGAG 12970292 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || || | || || || || ||||| || || || || || | || ||||| || || Sbjct 12970291 AGGGTACGTCCATCCTCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGGA 12970232 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || || ||||||||||||||||| ||||| ||||| || | ||||| || || ||| Sbjct 12970231 ATCCCCTCTTTATCCTGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCGACC 12970172 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || ||||| ||||| || ||||| || || ||||||||| || Sbjct 12970171 TCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTAACGAAAATCTGCATTGTG 12970121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151367685728056