Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq5 167 5e-36
seq7 154 3e-32
seq2 138 3e-27
>seq5
Length=15459558
Score = 167 bits (184), Expect = 5e-36
Identities = 398/597 (67%), Gaps = 20/597 (3%)
Strand=Plus/Plus
Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCT 268762
|||||| | ||||| || ||| | || || ||| | ||||| || || | ||
Sbjct 2624183 TTTGTGGTCTTTCCCATCCAGTACCCCGACATTTGGGACAAATACAAGCAAGCGGAAGCC 2624242
Query 268763 TCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTA 268822
|| |||||||| |||||||||||| |||| | || || || ||||| || |
Sbjct 2624243 TCGTTTTGGACGACCGAAGAAGTAGATTTGTCGAAAGATTTGGACGACTGGAAGAACAAA 2624302
Query 268823 ---AAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGAT 268879
|| | || ||| | || || || | ||||||| ||||| |||| |||
Sbjct 2624303 CTGAATTCTGATGAACGCTACTTCATTTCGCACGTTCTTGCATTTTTCGCAGCCTCTGAC 2624362
Query 268880 GGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCC 268939
|| ||||| |||||||| || || |||| |||| | || ||||| || | | |||||
Sbjct 2624363 GGAATCGTCAACGAAAACCTCGTCGAGAGGTTCAGCCAGGAGGTGCAAGTGACCGAAGCT 2624422
Query 268940 AGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTA 268999
| || |||||||| ||||| || ||||| ||||| || ||||| ||||||||||| |
Sbjct 2624423 CGCTGCTTTTACGGGTTCCAAATCGCTATTGAAAACATCCATTCGGAGATGTACAGCATG 2624482
Query 269000 TTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATGAGA 269059
|| || || || || || ||| | | || ||| || | | || ||| ||| ||
Sbjct 2624483 TTGATCGAAACGTACATTTCTGAGCCCCAGGAGAAG----GAGT-TCTTGTTCAATGCGA 2624537
Query 269060 -----ACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAA---CG 269111
|| || |||||| | || || | || ||||| || |||||||| |
Sbjct 2624538 TCGAGACGCTGCCCTGTGTTAAGAAGAAGGCCGACTGGGCCTTGCTGTGGATAAACAGCA 2624597
Query 269112 ATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTT 269171
| | |||| ||| || ||| | | || || |||||||| || ||||| || ||||| |
Sbjct 2624598 AGAACGCGACTTTTGGCGAACGAATCGTGGCGTTTGCCGCCGTCGAAGGGATTTTCTTCT 2624657
Query 269172 CGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGG--CCTTATGCCAGGATTAAC 269229
| || ||||| | || || ||| | | ||||| || ||||||||||| | ||
Sbjct 2624658 CTGGCAGCTTTGCTTCGATTTTCTGGCTTA--AAAAGCGGAATCTTATGCCAGGTCTCAC 2624715
Query 269230 TTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTT 269286
|| || || ||| |||| |||||||| || |||| ||||| || || |||||
Sbjct 2624716 ATTTTCCAATGAACTGATTTCGAGGGACGAGGGCCTACATTGCGATTTTGCCTGTTT 2624772
>seq7
Length=16482863
Score = 154 bits (170), Expect = 3e-32
Identities = 160/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409
||||| ||||| || |||||||| |||||||||||||| || || || | || |||||
Sbjct 10792721 TACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGACAGGGTGCGCCCATCTTC 10792780
Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469
|||||||| |||||||| || | |||||| ||||| ||||| || ||||||||||||||
Sbjct 10792781 GAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTATCCTG 10792840
Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529
|| || ||||| ||||| || | || || |||||||| || | || || |||||
Sbjct 10792841 GATTTTAGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTACTTCCAAAGTGATCGTCTT 10792900
Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || | || || || || || |||||
Sbjct 10792901 TCCCGTCAAGGTCTTCACGAAAATTTGCAT 10792930
Score = 143 bits (158), Expect = 6e-29
Identities = 150/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| |||||||| || ||||| ||||| || ||||| | |||||||| ||||||||||||
Sbjct 10793646 GTGGATTCTTTTTGGATATTGTAGTCGGAAAGAGTACGGCCGTCTTCAAGTTGTTTTCCA 10793705
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || | || ||||| || || || || ||||| || || || ||||| || ||
Sbjct 10793706 GCGAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTTGGCCTTA 10793765
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | |||||| |||||| ||||| | || || ||||| ||||| || |||
Sbjct 10793766 ACATTCTCAATGGTATCAGAAGGTTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTT 10793825
Query 104543 TTTACAAATATCTGCAT 104559
|| || || || |||||
Sbjct 10793826 TTGACGAAAATTTGCAT 10793842
Score = 140 bits (154), Expect = 7e-28
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| ||||| ||||| || || || ||||| | |||||||||||||||||||||
Sbjct 10792962 GTGGATTCCTTCTGGATATTGTAATCGGAAAGAGTACGGCCGTCTTCTAGTTGTTTTCCA 10793021
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | || ||||| || || || || || ||||| || |||||||| || ||
Sbjct 10793022 GCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCCTCTTTGTCTTGAATCTTAGCCTTG 10793081
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | ||||| |||||| || || || || || || || ||||| || |||
Sbjct 10793082 ACGTTCTCAATTGTATCAGAAGGTTCGACTTCCAGGGTGATGGTTTTGCCAGTCAGAGTT 10793141
Query 104543 TTTACAAATATCTGCAT 104559
|| || || || |||||
Sbjct 10793142 TTAACGAAAATTTGCAT 10793158
Score = 125 bits (138), Expect = 2e-23
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| ||||| || || || || || || || | || |||||||||||||| ||
Sbjct 10793874 GTGGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGCCCATCTTCTAGTTGTTTCCCG 10793933
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | || ||||| || || || || ||||| |||||||||||||| || ||
Sbjct 10793934 GCAAAGATCAATCTTTGTTGGTCTGGTGGGATCCCTTCCTTATCCTGAATCTTAGCCTTG 10793993
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| ||||| | || ||| |||||| || || | ||||| || || ||||| | ||
Sbjct 10793994 ACGTTTTCAATCGTGTCGGAAGGTTCGACTTCCAAAGTAATGGTTTTCCCAGTCAAGGTC 10794053
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 10794054 TTGACGAAGATCTGCAT 10794070
>seq2
Length=15265516
Score = 138 bits (152), Expect = 3e-27
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| ||||| || || | ||||| || | || ||||| ||||| ||||| || || ||
Sbjct 12970351 CCACCTCTGAGTCTTAAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGAG 12970292
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
|| || | || || || || ||||| || || || || || | || ||||| || ||
Sbjct 12970291 AGGGTACGTCCATCCTCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGGA 12970232
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|| || ||||||||||||||||| ||||| ||||| || | ||||| || || |||
Sbjct 12970231 ATCCCCTCTTTATCCTGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCGACC 12970172
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| || || || ||||| ||||| || ||||| || || ||||||||| ||
Sbjct 12970171 TCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTAACGAAAATCTGCATTGTG 12970121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151367685728056
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |