Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq4 129 5e-25 >seq4 Length=12290766 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 || ||||||||||| ||| ||||| || ||||||||||| | ||| || | ||| Sbjct 488954 AAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCATCC 489013 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 |||||||| ||||| | |||| |||||||| ||||| || | | |||||||||| Sbjct 489014 TCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGAATGCCTTCCTTGTCC 489073 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||||||| |||| | | ||||| || | || ||| ||| | || ||||| Sbjct 489074 TGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACCTCAAGAGTGATGGTC 489133 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 || ||||| ||||||||||| ||||| ||||||||| Sbjct 489134 TTGCCGGTCAGAGTTTTCACGAAAATTTGCATCGTG 489169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421240511014082