Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq9 84.2 3e-11 >seq9 Length=16184580 Score = 84.2 bits (92), Expect = 3e-11 Identities = 175/258 (68%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 164445 TATTTTCAGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGG 164504 ||| |||||| |||| ||||| || ||| | || || || | || || | || Sbjct 3722366 TATATTCAGAAGAGCTTTTGCGTCAAGAGTTTTCCCGCCAGAGATTGTGGAACAACTGGG 3722425 Query 164505 CTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAAT 164564 ||| ||||| | ||||| ||| | | |||| ||||| || |||||||| || || Sbjct 3722426 CTGCAAACACGTCAAAGGTATTCTTCTCTATGGCCCTCCAGGAACTGGTAAAACTTTGAT 3722485 Query 164565 GGCTCGATGCATTGCTCAAGCTTTTAAATCGC---GACCCGTTAAAATTGTTAATGGTCC 164621 ||| ||| |||| || | |||||| | || ||| ||||| || || || || Sbjct 3722486 GGCGCGACAAATTGGAAAAA-TGTTAAATGCCAGAGAGCCG--AAAATAGTCAACGGGCC 3722542 Query 164622 TGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGA 164681 || | | | |||||||| || ||||| || |||||| | |||| |||||| || Sbjct 3722543 CCAAATTCTAGATAAATATGTGGGCGAGTCTGAGGCTAATATCAGAAGATTGTTTGCAGA 3722602 Query 164682 GGCTGAAGAAGAACAAAA 164699 |||||||||||| |||| Sbjct 3722603 AGCTGAAGAAGAAGAAAA 3722620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595856492431200