Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq7 123 1e-23 seq3 122 5e-23 >seq7 Length=16482863 Score = 123 bits (136), Expect = 1e-23 Identities = 81/89 (91%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| |||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 5956727 AAGAAAAAA--AAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 5956670 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 5956669 GACGCTCTAACCAACTGAGCTAATGGGCC 5956641 >seq3 Length=31381287 Score = 122 bits (134), Expect = 5e-23 Identities = 78/86 (91%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 2751653 AAAAAAAAAACTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 2751712 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 2751713 GCTCTAACCAACTGAGCTAATGGGCC 2751738 Score = 116 bits (128), Expect = 2e-21 Identities = 80/91 (88%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 || || ||||| | ||||||||||| |||||||||| ||||||||||||||||||| Sbjct 489184 TTTATGAAAAAAAACTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 489125 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 489124 ACGACGCTCTAACCAACTGAGCTAATGGGCC 489094 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 29445264 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 29445323 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 29445324 CTGAGCTAATGGGCC 29445338 Score = 113 bits (124), Expect = 2e-20 Identities = 83/96 (86%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 11438 ATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||| || |||| || | ||||||||| |||||||||| ||||||||||||||||| Sbjct 489425 ATTATTAGAAAAAAAATTATGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTA 489366 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||||||| |||||||||||||||||||| || Sbjct 489365 GCACGACGCTCTAACCAACTGAGCTAATGGGCCTTC 489330 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 9942831 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 9942890 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 9942891 TGAGCTAATGGGCC 9942904 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 29261570 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 29261629 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 29261630 TGAGCTAATGGGCC 29261643 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261484564824232