Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq7 123 1e-23
seq3 122 5e-23
>seq7
Length=16482863
Score = 123 bits (136), Expect = 1e-23
Identities = 81/89 (91%), Gaps = 2/89 (2%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| |||||| |||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 5956727 AAGAAAAAA--AAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 5956670
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||||||||
Sbjct 5956669 GACGCTCTAACCAACTGAGCTAATGGGCC 5956641
>seq3
Length=31381287
Score = 122 bits (134), Expect = 5e-23
Identities = 78/86 (91%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||| || ||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 2751653 AAAAAAAAAACTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 2751712
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 2751713 GCTCTAACCAACTGAGCTAATGGGCC 2751738
Score = 116 bits (128), Expect = 2e-21
Identities = 80/91 (88%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498
|| || ||||| | ||||||||||| |||||||||| |||||||||||||||||||
Sbjct 489184 TTTATGAAAAAAAACTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 489125
Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||| ||||||||||||||||||||
Sbjct 489124 ACGACGCTCTAACCAACTGAGCTAATGGGCC 489094
Score = 114 bits (126), Expect = 7e-21
Identities = 70/75 (93%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 29445264 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 29445323
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||||||||
Sbjct 29445324 CTGAGCTAATGGGCC 29445338
Score = 113 bits (124), Expect = 2e-20
Identities = 83/96 (86%), Gaps = 1/96 (1%)
Strand=Plus/Minus
Query 11438 ATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496
|||| || |||| || | ||||||||| |||||||||| |||||||||||||||||
Sbjct 489425 ATTATTAGAAAAAAAATTATGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTA 489366
Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532
|||||||||||| |||||||||||||||||||| ||
Sbjct 489365 GCACGACGCTCTAACCAACTGAGCTAATGGGCCTTC 489330
Score = 113 bits (124), Expect = 2e-20
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 9942831 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 9942890
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 9942891 TGAGCTAATGGGCC 9942904
Score = 113 bits (124), Expect = 2e-20
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 29261570 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 29261629
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 29261630 TGAGCTAATGGGCC 29261643
Lambda K H
0.639 0.410 0.921
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261484564824232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |