Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq7 150 2e-31
seq4 131 2e-25
>seq7
Length=16482863
Score = 150 bits (166), Expect = 2e-31
Identities = 166/219 (76%), Gaps = 4/219 (2%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851
|||||||||||||| | || || || || || | ||| || ||| | ||||| ||
Sbjct 10793400 CGCAACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCG--GAGAGTGTGCGAC 10793457
Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910
|||||||| |||||| ||| | || || ||||||||||||||||| ||||| || ||||
Sbjct 10793458 CATCCTCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGAATCCCCTCTT 10793517
Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970
|||| | |||||| ||||| ||| ||| ||||| | | ||||| |||| ||||
Sbjct 10793518 TGTCCTGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACTTCAAGAGTGA 10793577
Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
| ||||||||||| | ||| ||||| || || |||||||
Sbjct 10793578 TCGTTTTTCCAGTCAAAGTCTTCACGAAAATTTGCATGC 10793616
Score = 147 bits (162), Expect = 2e-30
Identities = 177/241 (73%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || || |||| | |||||||||||||| | ||| |||||||| || |
Sbjct 10792920 AAAATTTGCATGCCACCTCGGAGACGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATA 10792979
Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888
|| |||||| | ||| | || || || |||||||| ||||||| ||||||||
Sbjct 10792980 TTGTAATCGGAAAGAGTACGGCCGTCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGT 10793039
Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948
|| ||||| || ||||| |||||||| | ||| || ||||||||| | | || |||
Sbjct 10793040 TGGTCTGGTGGGATACCCTCTTTGTCTTGAATCTTAGCCTTGACGTTCTCAATTGTATCA 10793099
Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
| | ||||| || | ||||||||||| ||||| |||||||| || || || ||||||
Sbjct 10793100 GAAGGTTCGACTTCCAGGGTGATGGTTTTGCCAGTCAGAGTTTTAACGAAAATTTGCATG 10793159
Query 95009 C 95009
|
Sbjct 10793160 C 10793160
Score = 136 bits (150), Expect = 4e-27
Identities = 177/243 (73%), Gaps = 4/243 (2%)
Strand=Plus/Plus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || || |||||||| ||||| |||||||| | || |||||||| || | |
Sbjct 10793832 AAAATTTGCATGCCACCTCTCAAACGCAATACCAAGTGAAGGGTGGATTCCTTCTGGATG 10793891
Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886
|| ||||| | | || || | ||| || || ||||| ||| ||||||| |||||||
Sbjct 10793892 TTGTAATC--TGAGAGGGTACGCCCATCTTCTAGTTGTTTCCCGGCAAAGATCAATCTTT 10793949
Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946
| || ||||| || || ||||| || || | ||| || ||||||||| | | ||||
Sbjct 10793950 GTTGGTCTGGTGGGATCCCTTCCTTATCCTGAATCTTAGCCTTGACGTTTTCAATCGTGT 10794009
Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006
| | | ||||| || | || |||||||| ||||| | || || || ||||||||||
Sbjct 10794010 CGGAAGGTTCGACTTCCAAAGTAATGGTTTTCCCAGTCAAGGTCTTGACGAAGATCTGCA 10794069
Query 95007 TGC 95009
|||
Sbjct 10794070 TGC 10794072
Score = 129 bits (142), Expect = 5e-25
Identities = 173/241 (72%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || || |||| | ||||| || ||||| | || ||||| ||||| | |
Sbjct 10793148 AAAATTTGCATGCCACCTCGGAGCCGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATG 10793207
Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888
|| || ||| | ||| | ||| || |||||||| ||| | ||||| || || |||
Sbjct 10793208 TTGTAGTCGGAGAGAGTTCGGCCATCTTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGC 10793267
Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948
|||||||| ||||| || |||||||| | |||||| ||||| ||| ||| ||||||
Sbjct 10793268 TGATCTGGGGGAATCCCCTCTTTGTCCTGAATTTTCGCCTTAACGTTTTCGATAGTGTCC 10793327
Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
| | || || || | ||||| || || ||||| | ||| || || ||||| ||||||
Sbjct 10793328 GATGGTTCTACTTCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCATG 10793387
Query 95009 C 95009
|
Sbjct 10793388 C 10793388
Score = 127 bits (140), Expect = 2e-24
Identities = 169/235 (72%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832
||| || || || ||||||| ||| |||||||| | || |||||||| || | ||| |
Sbjct 10794292 TTTGCATACCGCCCCTCAATCTCAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGT 10794351
Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892
| || || |||| || || || ||||| || | ||||| || | |||||| |
Sbjct 10794352 AGTCAGACAAAGTGCGTCCGTCTTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGT 10794411
Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952
|||| || |||||||| ||||| | || || || |||||| ||| || || | |
Sbjct 10794412 CTGGGGGGATACCTTCCTTGTCCTGGATCTTAGCTTTGACGTTTTCGATGGTATCGGAGG 10794471
Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| ||||| || | ||||||||||| ||||| | ||| ||||| |||||||||||
Sbjct 10794472 GCTCGACCTCCAAGGTGATGGTTTTACCAGTCAAAGTCTTCACGAAGATCTGCAT 10794526
Score = 111 bits (122), Expect = 1e-19
Identities = 169/241 (70%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || || |||| | |||||||||||||| | || ||||| ||||| |
Sbjct 10793604 AAAATTTGCATGCCACCTCGGAGACGCAACACCAAGTGGAGGGTGGATTCTTTTTGGATA 10793663
Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888
|| || ||| | ||| | || || || |||||||| | ||||| ||||||||
Sbjct 10793664 TTGTAGTCGGAAAGAGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTTTGT 10793723
Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948
|| ||||| || |||||||| ||||| | || || ||||| || | | || |||
Sbjct 10793724 TGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTATCA 10793783
Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
| | ||||| || | |||||||| || ||||| || ||||| || || || ||||||
Sbjct 10793784 GAAGGTTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTGACGAAAATTTGCATG 10793843
Query 95009 C 95009
|
Sbjct 10793844 C 10793844
Score = 109 bits (120), Expect = 5e-19
Identities = 167/236 (71%), Gaps = 4/236 (2%)
Strand=Plus/Plus
Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833
|||| |||||| | | || || || | || | ||| ||||||||||| | || ||
Sbjct 10792469 TTACTGTCCTCCGCGAAGACGTAAGACTAGATGAAGAGTGGATTCCTTTTGGATATTGTA 10792528
Query 94834 ATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGA 94891
|| | ||||| || ||| |||| ||||||||| ||||||| |||||||||||
Sbjct 10792529 GTCCG--AAAGTGTGCGACCATCTTCCAACTGTTTTCCCGCAAAGATCAATCTTTGCTGG 10792586
Query 94892 TCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCG 94951
||||| ||||||||||| || || | |||||| ||||| || | | ||||| |
Sbjct 10792587 TCTGGGGGAATACCTTCCTTATCTTGAATTTTGGCCTTCACATTTTCAATCGTGTCCGAT 10792646
Query 94952 TGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| || || || | ||| || ||||| ||||| | || ||||| || || |||||
Sbjct 10792647 GGCTCAACTTCCAACGTAATTGTTTTCCCAGTCAACGTCTTCACGAAAATTTGCAT 10792702
Score = 105 bits (116), Expect = 6e-18
Identities = 168/241 (70%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || ||||||| || ||||| || || || | || ||||| ||||| |
Sbjct 10792692 AAAATTTGCATACCTCCTCGCAGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATA 10792751
Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888
||||| || || ||| ||| || || ||||| || ||||||| || || |||
Sbjct 10792752 TTATAGTCCGACAGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGC 10792811
Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948
|||||||||||||| |||||||| || | ||||| || || || | | |||||
Sbjct 10792812 TGATCTGGAGGAATGCCTTCTTTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCT 10792871
Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
| | | || || || | ||||| || ||||| || | || ||||| || || ||||||
Sbjct 10792872 GAGGGTTCTACTTCCAAAGTGATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCATG 10792931
Query 95009 C 95009
|
Sbjct 10792932 C 10792932
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
||||| |||| ||||| |||||||| | || |||||||| || | ||| |||||| |
Sbjct 10794072 CCTCCCCTCAGACGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 10794131
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| || || || ||||| || | || || || | || |||||||||||
Sbjct 10794132 AAGGTGCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGG 10794191
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || || ||||| | || || || |||||| ||| || |||| | | || ||
Sbjct 10794192 ATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAACT 10794251
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| || ||||| || || || || ||||| |||||
Sbjct 10794252 TCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCAT 10794298
>seq4
Length=12290766
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| |||| || ||||| || || || | || |||||||| || | ||| |||||| |
Sbjct 488939 CCACCTCGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 488998
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| |||| ||||||||||||||| || |||| || || | || ||||| || |||
Sbjct 488999 AAAGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGA 489058
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| ||||| ||||| | |||||| || ||||| ||| ||||| | | |||||
Sbjct 489059 ATGCCTTCCTTGTCCTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACC 489118
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| |||||||| || || || ||||||||||| || || |||||
Sbjct 489119 TCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448279533221520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |