Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq7 150 2e-31 seq4 131 2e-25 >seq7 Length=16482863 Score = 150 bits (166), Expect = 2e-31 Identities = 166/219 (76%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 |||||||||||||| | || || || || || | ||| || ||| | ||||| || Sbjct 10793400 CGCAACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCG--GAGAGTGTGCGAC 10793457 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 |||||||| |||||| ||| | || || ||||||||||||||||| ||||| || |||| Sbjct 10793458 CATCCTCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGAATCCCCTCTT 10793517 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | |||||| ||||| ||| ||| ||||| | | ||||| |||| |||| Sbjct 10793518 TGTCCTGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACTTCAAGAGTGA 10793577 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | ||||||||||| | ||| ||||| || || ||||||| Sbjct 10793578 TCGTTTTTCCAGTCAAAGTCTTCACGAAAATTTGCATGC 10793616 Score = 147 bits (162), Expect = 2e-30 Identities = 177/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||| | |||||||||||||| | ||| |||||||| || | Sbjct 10792920 AAAATTTGCATGCCACCTCGGAGACGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATA 10792979 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || |||||| | ||| | || || || |||||||| ||||||| |||||||| Sbjct 10792980 TTGTAATCGGAAAGAGTACGGCCGTCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGT 10793039 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || ||||| || ||||| |||||||| | ||| || ||||||||| | | || ||| Sbjct 10793040 TGGTCTGGTGGGATACCCTCTTTGTCTTGAATCTTAGCCTTGACGTTCTCAATTGTATCA 10793099 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | | ||||| || | ||||||||||| ||||| |||||||| || || || |||||| Sbjct 10793100 GAAGGTTCGACTTCCAGGGTGATGGTTTTGCCAGTCAGAGTTTTAACGAAAATTTGCATG 10793159 Query 95009 C 95009 | Sbjct 10793160 C 10793160 Score = 136 bits (150), Expect = 4e-27 Identities = 177/243 (73%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||||||| ||||| |||||||| | || |||||||| || | | Sbjct 10793832 AAAATTTGCATGCCACCTCTCAAACGCAATACCAAGTGAAGGGTGGATTCCTTCTGGATG 10793891 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || ||||| | | || || | ||| || || ||||| ||| ||||||| ||||||| Sbjct 10793892 TTGTAATC--TGAGAGGGTACGCCCATCTTCTAGTTGTTTCCCGGCAAAGATCAATCTTT 10793949 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | || ||||| || || ||||| || || | ||| || ||||||||| | | |||| Sbjct 10793950 GTTGGTCTGGTGGGATCCCTTCCTTATCCTGAATCTTAGCCTTGACGTTTTCAATCGTGT 10794009 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | | ||||| || | || |||||||| ||||| | || || || |||||||||| Sbjct 10794010 CGGAAGGTTCGACTTCCAAAGTAATGGTTTTCCCAGTCAAGGTCTTGACGAAGATCTGCA 10794069 Query 95007 TGC 95009 ||| Sbjct 10794070 TGC 10794072 Score = 129 bits (142), Expect = 5e-25 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||| | ||||| || ||||| | || ||||| ||||| | | Sbjct 10793148 AAAATTTGCATGCCACCTCGGAGCCGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATG 10793207 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| | ||| | ||| || |||||||| ||| | ||||| || || ||| Sbjct 10793208 TTGTAGTCGGAGAGAGTTCGGCCATCTTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGC 10793267 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| ||||| || |||||||| | |||||| ||||| ||| ||| |||||| Sbjct 10793268 TGATCTGGGGGAATCCCCTCTTTGTCCTGAATTTTCGCCTTAACGTTTTCGATAGTGTCC 10793327 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | | || || || | ||||| || || ||||| | ||| || || ||||| |||||| Sbjct 10793328 GATGGTTCTACTTCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCATG 10793387 Query 95009 C 95009 | Sbjct 10793388 C 10793388 Score = 127 bits (140), Expect = 2e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || || ||||||| ||| |||||||| | || |||||||| || | ||| | Sbjct 10794292 TTTGCATACCGCCCCTCAATCTCAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGT 10794351 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || || |||| || || || ||||| || | ||||| || | |||||| | Sbjct 10794352 AGTCAGACAAAGTGCGTCCGTCTTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGT 10794411 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| || |||||||| ||||| | || || || |||||| ||| || || | | Sbjct 10794412 CTGGGGGGATACCTTCCTTGTCCTGGATCTTAGCTTTGACGTTTTCGATGGTATCGGAGG 10794471 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || | ||||||||||| ||||| | ||| ||||| ||||||||||| Sbjct 10794472 GCTCGACCTCCAAGGTGATGGTTTTACCAGTCAAAGTCTTCACGAAGATCTGCAT 10794526 Score = 111 bits (122), Expect = 1e-19 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||| | |||||||||||||| | || ||||| ||||| | Sbjct 10793604 AAAATTTGCATGCCACCTCGGAGACGCAACACCAAGTGGAGGGTGGATTCTTTTTGGATA 10793663 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| | ||| | || || || |||||||| | ||||| |||||||| Sbjct 10793664 TTGTAGTCGGAAAGAGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTTTGT 10793723 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || ||||| || |||||||| ||||| | || || ||||| || | | || ||| Sbjct 10793724 TGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTATCA 10793783 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | | ||||| || | |||||||| || ||||| || ||||| || || || |||||| Sbjct 10793784 GAAGGTTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTGACGAAAATTTGCATG 10793843 Query 95009 C 95009 | Sbjct 10793844 C 10793844 Score = 109 bits (120), Expect = 5e-19 Identities = 167/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 |||| |||||| | | || || || | || | ||| ||||||||||| | || || Sbjct 10792469 TTACTGTCCTCCGCGAAGACGTAAGACTAGATGAAGAGTGGATTCCTTTTGGATATTGTA 10792528 Query 94834 ATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGA 94891 || | ||||| || ||| |||| ||||||||| ||||||| ||||||||||| Sbjct 10792529 GTCCG--AAAGTGTGCGACCATCTTCCAACTGTTTTCCCGCAAAGATCAATCTTTGCTGG 10792586 Query 94892 TCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCG 94951 ||||| ||||||||||| || || | |||||| ||||| || | | ||||| | Sbjct 10792587 TCTGGGGGAATACCTTCCTTATCTTGAATTTTGGCCTTCACATTTTCAATCGTGTCCGAT 10792646 Query 94952 TGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | ||| || ||||| ||||| | || ||||| || || ||||| Sbjct 10792647 GGCTCAACTTCCAACGTAATTGTTTTCCCAGTCAACGTCTTCACGAAAATTTGCAT 10792702 Score = 105 bits (116), Expect = 6e-18 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||||||| || ||||| || || || | || ||||| ||||| | Sbjct 10792692 AAAATTTGCATACCTCCTCGCAGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATA 10792751 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 ||||| || || ||| ||| || || ||||| || ||||||| || || ||| Sbjct 10792752 TTATAGTCCGACAGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGC 10792811 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||||||||| |||||||| || | ||||| || || || | | ||||| Sbjct 10792812 TGATCTGGAGGAATGCCTTCTTTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCT 10792871 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | | | || || || | ||||| || ||||| || | || ||||| || || |||||| Sbjct 10792872 GAGGGTTCTACTTCCAAAGTGATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCATG 10792931 Query 95009 C 95009 | Sbjct 10792932 C 10792932 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| ||||| |||||||| | || |||||||| || | ||| |||||| | Sbjct 10794072 CCTCCCCTCAGACGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 10794131 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| || || || ||||| || | || || || | || ||||||||||| Sbjct 10794132 AAGGTGCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGG 10794191 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || || |||||| ||| || |||| | | || || Sbjct 10794192 ATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAACT 10794251 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| || || || || ||||| ||||| Sbjct 10794252 TCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCAT 10794298 >seq4 Length=12290766 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || ||||| || || || | || |||||||| || | ||| |||||| | Sbjct 488939 CCACCTCGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 488998 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| ||||||||||||||| || |||| || || | || ||||| || ||| Sbjct 488999 AAAGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGA 489058 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | |||||| || ||||| ||| ||||| | | ||||| Sbjct 489059 ATGCCTTCCTTGTCCTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACC 489118 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || || || ||||||||||| || || ||||| Sbjct 489119 TCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448279533221520