Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq908 159 5e-35 >seq908 Length=1147 Score = 159 bits (176), Expect = 5e-35 Identities = 197/267 (74%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | | | || ||||||||||| || ||||| ||||| || ||| Sbjct 825 GCAAAACGTCATCGTAAAGTTTTACGTGATAACATCCAGGGCATCACGAAGCCCGCGATC 884 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | |||| |||||||| ||||| || ||| |||| || | | || ||||| | Sbjct 885 AGAAGATTGGCACGTCGTGGAGGAGTGAAACGTATCTCCGGTCTCATTTACGAAGAAACC 944 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| ||||| | |||||| | | ||| || | |||||| || ||| ||||| Sbjct 945 AGAGGTGTCCTGAAGGTATTCCTCGAAAACGTCATTCGTGATGCCGTCACCTACACCGAA 1004 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| |||||||| || |||||| |||||||| |||| || || ||||| |||||||| Sbjct 1005 CACGC-AAACGTAAAACCGTCACCGCCATGGATGTCGTTTACGCTTTGAAGCGTCAAGGG 1063 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| |||| || ||||| ||||| Sbjct 1064 CGTACACTTTACGG-TTTGGCGGTTAA 1089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073296412826