Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq5 125 8e-24
>seq5
Length=15459558
Score = 125 bits (138), Expect = 8e-24
Identities = 295/438 (67%), Gaps = 8/438 (2%)
Strand=Plus/Minus
Query 21200 ACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAAT 21259
||| | || || || ||||| ||||| ||||| || ||| ||| ||||| ||
Sbjct 2625045 ACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTGGAAATAATCGTCATGAAATCGAAC 2624986
Query 21260 GGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAATCTATCTGCTACA 21319
||||| | || || | ||||| | || |||| || || ||||| || || |||
Sbjct 2624985 GGATTCTGTGAGTTGTAGATTTTCTCGCACCCCAACTCGCCCAACAATCTGTCGGCCACA 2624926
Query 21320 AATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCT 21379
||||| || ||||| ||||| || | || ||||| || |||| | || || | ||||
Sbjct 2624925 AATTCGATGTATTGGCACATCAAAGCGCAGTTCATTCCAATCATGCTGACTGGTAAAGCT 2624866
Query 21380 TTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTATTATCC--TAG 21437
| ||||| || || || || ||| || || || || || |||| |
Sbjct 2624865 TCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCTTGGATAATGCTTTGAATCCGTTCT 2624806
Query 21438 ATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAAC 21497
|| || || | || || || ||||||||||| |||||||| ||||| | |
Sbjct 2624805 TTGGAC--GGCTTCTGCACCAAGTGAGAGAACATCAAACAGGCAAAATCGCAATGTAGGC 2624748
Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTA-ATCCTCTCTTT 21556
| || ||||| || | |||||| |||||||| | ||| ||||| | || | | ||||
Sbjct 2624747 CCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGGCATAAGATTC-CGCTTT 2624689
Query 21557 TTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAATGCCCTCAACGGCAGCAAA 21615
|| | ||| || || || ||||| ||| || || |||||||| || || ||||| |||||
Sbjct 2624688 TTAAGCCAGAAAATCGAAGCAAA-GCTGCCAGAGAAGAAAATCCCTTCGACGGCGGCAAA 2624630
Query 21616 TGCAACTAATCGTTCACC 21633
|| || | |||||| ||
Sbjct 2624629 CGCCACGATTCGTTCGCC 2624612
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531886957281680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |