Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq5 125 8e-24 >seq5 Length=15459558 Score = 125 bits (138), Expect = 8e-24 Identities = 295/438 (67%), Gaps = 8/438 (2%) Strand=Plus/Minus Query 21200 ACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAAT 21259 ||| | || || || ||||| ||||| ||||| || ||| ||| ||||| || Sbjct 2625045 ACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTGGAAATAATCGTCATGAAATCGAAC 2624986 Query 21260 GGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAATCTATCTGCTACA 21319 ||||| | || || | ||||| | || |||| || || ||||| || || ||| Sbjct 2624985 GGATTCTGTGAGTTGTAGATTTTCTCGCACCCCAACTCGCCCAACAATCTGTCGGCCACA 2624926 Query 21320 AATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCT 21379 ||||| || ||||| ||||| || | || ||||| || |||| | || || | |||| Sbjct 2624925 AATTCGATGTATTGGCACATCAAAGCGCAGTTCATTCCAATCATGCTGACTGGTAAAGCT 2624866 Query 21380 TTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTATTATCC--TAG 21437 | ||||| || || || || ||| || || || || || |||| | Sbjct 2624865 TCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCTTGGATAATGCTTTGAATCCGTTCT 2624806 Query 21438 ATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAAC 21497 || || || | || || || ||||||||||| |||||||| ||||| | | Sbjct 2624805 TTGGAC--GGCTTCTGCACCAAGTGAGAGAACATCAAACAGGCAAAATCGCAATGTAGGC 2624748 Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTA-ATCCTCTCTTT 21556 | || ||||| || | |||||| |||||||| | ||| ||||| | || | | |||| Sbjct 2624747 CCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGGCATAAGATTC-CGCTTT 2624689 Query 21557 TTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAATGCCCTCAACGGCAGCAAA 21615 || | ||| || || || ||||| ||| || || |||||||| || || ||||| ||||| Sbjct 2624688 TTAAGCCAGAAAATCGAAGCAAA-GCTGCCAGAGAAGAAAATCCCTTCGACGGCGGCAAA 2624630 Query 21616 TGCAACTAATCGTTCACC 21633 || || | |||||| || Sbjct 2624629 CGCCACGATTCGTTCGCC 2624612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531886957281680