Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq4 356 3e-93
seq5 259 6e-64
>seq4
Length=12290766
Score = 356 bits (394), Expect = 3e-93
Identities = 1224/1900 (64%), Gaps = 49/1900 (3%)
Strand=Plus/Minus
Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045
|| |||| |||||||||||||||| | || |||||||| | || ||||||||| ||
Sbjct 1759639 TTATCCACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAATAGTACATCCCT 1759580
Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA----ATAACT 62101
|| |||| ||| | ||| ||||| |||||||| | || || |||| |
Sbjct 1759579 GTCTTTAAACCCTTATCCCACCCGTAGAAATGCAT----GGAAGACATGACCCCATAATT 1759524
Query 62102 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 62161
||| | || ||||| |||||||| || ||||| || || || || || || || || ||
Sbjct 1759523 CGGGGCCGCAATATGAATATTCATCGACTGACTCTGGTCAATAAACGCGCCTCTATCAGC 1759464
Query 62162 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 62221
||||| | || || || || | ||| ||||| | |||||||| | | | || |
Sbjct 1759463 CGCCATATCAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTTGTTTCAA 1759404
Query 62222 ATCTTCTGGAA-----GGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTC 62276
||| || |||| || ||| || |||| || ||| || || |||||| ||||
Sbjct 1759403 ATCGTCGGGAATCCCCGGAATGTTTT--GAATCGAACCATAATTCGCAATAATCTGATTC 1759346
Query 62277 TTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 62336
|| ||| ||| | ||| | ||||| || ||| | | || || ||| |||| ||
Sbjct 1759345 TTCATCGTATCGTCCCAAAGCCCCCTCTCAGTCAAATCCTTCAGCAGGTGCTGATTCACG 1759286
Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396
|||||||| || |||||||| || | || || |||||| || |||||||| |
Sbjct 1759285 ACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTACGGTTCGGTC 1759226
Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456
|| |||||||| ||||||||||| ||||| || || || ||||| || |||| | ||
Sbjct 1759225 GATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAAAAGTAGC 1759166
Query 62457 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 62516
||| | || ||||||| | |||||| | ||| | | ||||| ||| | ||
Sbjct 1759165 GAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCCACAAATTT 1759106
Query 62517 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 62576
| || || || | | ||| | |||| | || ||| ||
Sbjct 1759105 GTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGGTGACCCTTCA 1759046
Query 62577 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62636
|| || || || || || | ||| || || ||||| ||||| ||||| || || ||||||
Sbjct 1759045 TAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGGCGCCGTAA 1758986
Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696
|||| |||||||| || | | ||||| ||| || ||| |||||||||| || |
Sbjct 1758985 TAAAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGGGCTATCAAAAGGC--A 1758928
Query 62697 TTT--AAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754
|| | |||||| ||||| || || | || ||||| ||||| || | || || || |
Sbjct 1758927 TTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGGCCTGTGGC 1758868
Query 62755 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 62814
| ||| || | || ||||| | |||||| ||||| | ||| || | ||| || |
Sbjct 1758867 GCAGATTCGACTTACGCGCCTCTGGCAAAGGATAGTAATTCAGATCAATGACTTTGTTCA 1758808
Query 62815 GATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC-GCCCAT-- 62871
||| | | | |||||| | ||||||| ||| ||| || | | || | |
Sbjct 1758807 AATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTTAAAGTCGTAGCCGCTCCTGT 1758748
Query 62872 ---CTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 62928
|| | || |||||||| | ||| | || |||| ||||| ||||| | || | |
Sbjct 1758747 CCGCTTTCACGAACATGTTTACGGCGATTGAGGCCAAGTTACAGACGGCGATTTCGTCGG 1758688
Query 62929 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTT 62988
| | | | | ||| || ||||| | ||| || | | ||||||| ||||||||||
Sbjct 1758687 GTGATGTAAACTCGACTATTTCCGTGCATAAATTGCTGCTCCTGATAGTGCCTAAATTTT 1758628
Query 62989 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 63048
|||| || || || ||||||| || || || || || ||| | || || ||||| || |
Sbjct 1758627 GTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATGTAAGGGGTGCCAGTCTCCA 1758568
Query 63049 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-CTTTATTATAGATTTGTATCTC 63107
||| || | ||| || ||| ||| | || || | | | | | || |
Sbjct 1758567 CCTGGGAGACGCAAATAGCGCGCCAAACGTCCCGCGCTGGTAACTGTCTA-ACATAGCGA 1758509
Query 63108 CTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT 63167
| || | |||||| | |||||| ||||||||| || |||||| || | | |
Sbjct 1758508 CCGTCAGTCTCGTATTTTTCGTACAATTTTTCGAACTCTTCGCCCCAACAATCGGCAAGG 1758449
Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227
|| || | | | |||||||||| ||||| | |||| | ||||| || |||
Sbjct 1758448 CCTGGTGACTGGTGTGGACACATCAGGGACCATTTCTCGTCGTTTTTCACCCGGCGCATG 1758389
Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287
|| | ||||| |||| | ||| | || | || | | || | | ||| || ||
Sbjct 1758388 AACAAGTCAGGCGTCCACAAAGCGAAGAACAAGTCGCGTGCCCTTAGCTGCTCCTTCCCC 1758329
Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347
|| || || || | | | || ||| |||||| | |||||| || || | ||| ||
Sbjct 1758328 GTGTTTTTCTTCAAGTTTAAAAAATCCAAAATATCGGCATGCCAAGGCTCGAGGTAAATA 1758269
Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407
|| | | || || | |||||| || || || || | ||| | |||| ||| ||| ||
Sbjct 1758268 GCGCAAGCCCCCGGTCTTTTGTTCCCCCCTTGGTCCACGTAGCGCGCGGAGTTGTTAAAA 1758209
Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATT---GGTACCGG----AG----- 63455
|| | ||| | || | ||| |||| ||| | | || ||| |||| ||
Sbjct 1758208 ACGCGCAAAACGGGCACAATCCCGTCTGAGA---CTTTGGGGGTGCCGGCCAAAGTGGTC 1758152
Query 63456 ---ATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 63512
| | | || |||| || | || ||| | |||| || |||||| ||
Sbjct 1758151 CGAAAGGTGGTGCCTTTGGCCCGTAAGTTGTGAATACTGACGCCTAGACCGCCTGCCGTT 1758092
Query 63513 TTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATC 63572
|| || || | || ||| | | || | | || ||||| | | || |||
Sbjct 1758091 TTGGAAATCATGGCACATTGGGTCAAACAGCGCGAAATGCCCTCGAGATTGTCCTCGGGG 1758032
Query 63573 A-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 63631
| |||| | ||||| ||| || | |||| | ||| | || || | ||
Sbjct 1758031 AGAGTTACG-AGAAAGCAGGAGGAGAGTTGGGGTTTGGGTGTTGCAGCTGAGAAGAGTGT 1757973
Query 63632 AGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGT 63690
|||| ||||| || || ||||||| || | |||| ||||| || || || |||||||
Sbjct 1757972 AGGACTGGCGTGTGTGAAGTATTTTTCTGACATGTAG-TTGTAAGTTTCGATGGCTGAGT 1757914
Query 63691 CTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 63750
| || || | || || || || ||||| ||||||| |||||| || || | ||||
Sbjct 1757913 CGATGTCTGAGCCGTGGATGCCGACAGCGACGCGCATTAGCATGTGTTGGGGGCGCTCAA 1757854
Query 63751 CGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63810
|||| ||| ||| ||||| | ||||||||| || | ||||| ||||| || || |
Sbjct 1757853 CGATTTTGCCGTTGATTTTAAGCAAGTAGGAACGCTCGAGGGTTTTGAAACCGAAGTAAT 1757794
Query 63811 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850
|||| || || || || ||||| || || ||||||||
Sbjct 1757793 TGTAAGAGAAATCGCGATCGTAGATTATGCAAGAGTTGAG 1757754
>seq5
Length=15459558
Score = 259 bits (286), Expect = 6e-64
Identities = 590/882 (67%), Gaps = 13/882 (1%)
Strand=Plus/Minus
Query 33004 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33063
||||| | || |||||||| ||||| || || || ||||| || || |||||
Sbjct 2625069 ACTCCGCTCTTCTGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTG 2625010
Query 33064 GATATATTTTCCATGAAATCAAACGGATTG-GTAACATTATAAAtttttttAAATCCCAA 33122
|| ||| | ||||||||| |||||||| || | || || ||||| | | |||||
Sbjct 2625009 GAAATAATCGTCATGAAATCGAACGGATTCTGTGAG-TTGTAGATTTTCTCGCACCCCAA 2624951
Query 33123 TTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCAT 33182
|| | |||||| || || || ||||| || ||| ||||| | || |||||
Sbjct 2624950 CTCGCCCAACAATCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCAT 2624891
Query 33183 TCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATC 33242
||| || | | ||||| | ||| |||| | ||||| | || || ||||| ||
Sbjct 2624890 TCCAATCATGCTGACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTC 2624831
Query 33243 TGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAA 33302
| ||||| | || ||||| ||| |||| || || ||||||||
Sbjct 2624830 TTGGATAATGCTTTGAATCCGTTCTTTGGACGGCTTCTGCACCAAGTGAGAGAACATCAA 2624771
Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362
||| || |||||||| || || |||||||| || ||| ||||| |||||||| |||||
Sbjct 2624770 ACAGGCAAAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAG 2624711
Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422
|| ||||| || |||||||||||||| || || ||||| || ||||| |||||
Sbjct 2624710 ACCTGGCATAAGATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAA 2624651
Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG--- 33479
|| ||||| || || ||||| || | | || || ||| || | ||| || ||
Sbjct 2624650 AATCCCTTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAA--GTCGCGTTCTTGCTG 2624593
Query 33480 --TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537
||||||| ||||| ||||||||||| || ||||| |||| ||| || || |||
Sbjct 2624592 TTTATCCACAGCAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCA 2624533
Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597
|| || | | | || || | || || || || |||||||| | || |||
Sbjct 2624532 TTGAACAAGAACTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTGTAC 2624473
Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657
|| |||||||| ||||||||||| || || || || ||||| || || | ||| |||||
Sbjct 2624472 ATCTCCGAATGGATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCGGTC 2624413
Query 33658 ATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717
| || || || | || | || | | ||||| || || ||||||||| ||||
Sbjct 2624412 ACTTGCACCTCCTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAGGCT 2624353
Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTC 33774
|| ||||| || | || || || || || ||| || | | ||| || |||
Sbjct 2624352 GCGAAAAATGCAAGAACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTTGTTCTTC 2624293
Query 33775 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33834
|| || | | |||||| || | |||||||||||| |||||||| || || || ||
Sbjct 2624292 CAGTCGTCCAAATCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTCCGCT 2624233
Query 33835 TTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAA 33876
| || || ||| ||| ||||| || |||| |||||||
Sbjct 2624232 TGCTTGTATTTGTCCCAAATGTCGGGGTACTGGA-TGGGAAA 2624192
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622930987799120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |