Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq4 123 6e-23
>seq4
Length=12290766
Score = 123 bits (136), Expect = 6e-23
Identities = 242/357 (68%), Gaps = 2/357 (1%)
Strand=Plus/Plus
Query 364731 TCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAA 364790
|||||| || || || || || |||||||||||||| ||||| || || | || ||
Sbjct 1759157 TCGCAATTCGCTACTTTTGGCTCCAATGCCCACGGCTTCGACTGCCCAAATTTTGGGTAA 1759216
Query 364791 CAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGA 364850
|| || | |||||||| || ||| | ||| | ||||| | || || ||
Sbjct 1759217 TAATGAATCGACCGAACCGTACACTTCTAATATCTATGTGAGGCGGGTGTTGTCTGGGGA 1759276
Query 364851 ATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGA 364910
|||| || || ||| || |||| | |||||| | | || | ||||| |||| ||
Sbjct 1759277 GTTTCAAGTCGTGAATCAGCACCTGCTGAAGGATTTGACTGAGAGGGGGCTTTGGGACGA 1759336
Query 364911 CAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCC 364970
| |||||||| | || || || | ||||||| | || |||||||| || ||||
Sbjct 1759337 TACGATGAAGAATCAGATTATTGCGAATTATGGTTCGATTCAAAACATTCCGGGGATTCC 1759396
Query 364971 AGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGA 365030
|| ||| |||| | | || ||||| || ||||| ||||| | | | | |||||
Sbjct 1759397 CGACGATTTGAAACAACTGTATAAAACAGTCTGGGAGATTTCGCAGAAAGTTATTATTGA 1759456
Query 365031 TATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCAT 365087
||||||||| ||| | || || ||||| ||||| |||||| | || |||||||
Sbjct 1759457 TATGGCGGCTGATAGAGGCGCGTTTATTGACCAGAGTCAGTCGATGAA--TATTCAT 1759511
Score = 89.7 bits (98), Expect = 1e-12
Identities = 272/409 (67%), Gaps = 10/409 (2%)
Strand=Plus/Plus
Query 111390 ACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGT 111449
|| || ||||| ||| | || |||||||| | |||||||||| || | ||||
Sbjct 288187 ACGAACGCAAACGAATTAAAAGAGAAAAATGTGCATATTTGGGATGCGAACAGCACACGA 288246
Query 111450 GACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTAC 111509
|| ||||| ||||| || || || || ||| || || ||||| ||||| |||||
Sbjct 288247 GAGTTTCTCGATTCTGTGGGGCTCAATGAGCGCGAGGAGGGCGATCTGGGACCGGTTTAT 288306
Query 111510 GGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCAC--GACTCATATGATT 111567
|| || || |||||||||||||| || || ||||| |||||| | | | | |
Sbjct 288307 GGTTTCCAGTGGCGCCACTTTGGGGCCGAGTACAAGGGGATGCACTGGGATTACGCCAAT 288366
Query 111568 CACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTAAGAA-CAACCCAACTTCT 111626
|| |||| | ||| ||||| |||| || || |||| || |||||||| |
Sbjct 288367 CA-AGGG-ATTGACCAATTGGCTCATGTTATCGAAACAATTCGTAATAAACCCAAC-GAT 288423
Query 111627 CGTCGCATTATTATGAGTGCATGGAACCCAAATGCAT-TGGAAAAAATGGCACTTCCACC 111685
| | || || ||| |||| ||||| || | || || | ||||||| || || ||
Sbjct 288424 AGGAGAATCATAATGTGTGCGTGGAATCC-AGTGGATATTCCCGAAATGGCCCTCCCGCC 288482
Query 111686 ATGTCA-TCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATC 111744
||||| | ||| ||||||| ||| | ||| | || || |||| |
Sbjct 288483 TTGTCACTGCCTCGTG-CAGTTTTTTGTGGCAAATGGGGAATTGTCGTGTTTGTTGTACC 288541
Query 111745 AGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTA 111793
| | || |||||||| || || || || ||||| ||||||||||||||
Sbjct 288542 AAAGGTCGGCTGATATGGGGCTGGGGGTGCCGTTCAATATTGCAAGTTA 288590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303318832228124
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |