Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4 123 6e-23 >seq4 Length=12290766 Score = 123 bits (136), Expect = 6e-23 Identities = 242/357 (68%), Gaps = 2/357 (1%) Strand=Plus/Plus Query 364731 TCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAA 364790 |||||| || || || || || |||||||||||||| ||||| || || | || || Sbjct 1759157 TCGCAATTCGCTACTTTTGGCTCCAATGCCCACGGCTTCGACTGCCCAAATTTTGGGTAA 1759216 Query 364791 CAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGA 364850 || || | |||||||| || ||| | ||| | ||||| | || || || Sbjct 1759217 TAATGAATCGACCGAACCGTACACTTCTAATATCTATGTGAGGCGGGTGTTGTCTGGGGA 1759276 Query 364851 ATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGA 364910 |||| || || ||| || |||| | |||||| | | || | ||||| |||| || Sbjct 1759277 GTTTCAAGTCGTGAATCAGCACCTGCTGAAGGATTTGACTGAGAGGGGGCTTTGGGACGA 1759336 Query 364911 CAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCC 364970 | |||||||| | || || || | ||||||| | || |||||||| || |||| Sbjct 1759337 TACGATGAAGAATCAGATTATTGCGAATTATGGTTCGATTCAAAACATTCCGGGGATTCC 1759396 Query 364971 AGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGA 365030 || ||| |||| | | || ||||| || ||||| ||||| | | | | ||||| Sbjct 1759397 CGACGATTTGAAACAACTGTATAAAACAGTCTGGGAGATTTCGCAGAAAGTTATTATTGA 1759456 Query 365031 TATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCAT 365087 ||||||||| ||| | || || ||||| ||||| |||||| | || ||||||| Sbjct 1759457 TATGGCGGCTGATAGAGGCGCGTTTATTGACCAGAGTCAGTCGATGAA--TATTCAT 1759511 Score = 89.7 bits (98), Expect = 1e-12 Identities = 272/409 (67%), Gaps = 10/409 (2%) Strand=Plus/Plus Query 111390 ACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGT 111449 || || ||||| ||| | || |||||||| | |||||||||| || | |||| Sbjct 288187 ACGAACGCAAACGAATTAAAAGAGAAAAATGTGCATATTTGGGATGCGAACAGCACACGA 288246 Query 111450 GACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTAC 111509 || ||||| ||||| || || || || ||| || || ||||| ||||| ||||| Sbjct 288247 GAGTTTCTCGATTCTGTGGGGCTCAATGAGCGCGAGGAGGGCGATCTGGGACCGGTTTAT 288306 Query 111510 GGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCAC--GACTCATATGATT 111567 || || || |||||||||||||| || || ||||| |||||| | | | | | Sbjct 288307 GGTTTCCAGTGGCGCCACTTTGGGGCCGAGTACAAGGGGATGCACTGGGATTACGCCAAT 288366 Query 111568 CACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTAAGAA-CAACCCAACTTCT 111626 || |||| | ||| ||||| |||| || || |||| || |||||||| | Sbjct 288367 CA-AGGG-ATTGACCAATTGGCTCATGTTATCGAAACAATTCGTAATAAACCCAAC-GAT 288423 Query 111627 CGTCGCATTATTATGAGTGCATGGAACCCAAATGCAT-TGGAAAAAATGGCACTTCCACC 111685 | | || || ||| |||| ||||| || | || || | ||||||| || || || Sbjct 288424 AGGAGAATCATAATGTGTGCGTGGAATCC-AGTGGATATTCCCGAAATGGCCCTCCCGCC 288482 Query 111686 ATGTCA-TCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATC 111744 ||||| | ||| ||||||| ||| | ||| | || || |||| | Sbjct 288483 TTGTCACTGCCTCGTG-CAGTTTTTTGTGGCAAATGGGGAATTGTCGTGTTTGTTGTACC 288541 Query 111745 AGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTA 111793 | | || |||||||| || || || || ||||| |||||||||||||| Sbjct 288542 AAAGGTCGGCTGATATGGGGCTGGGGGTGCCGTTCAATATTGCAAGTTA 288590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303318832228124