Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4 235 5e-57 seq5 114 1e-20 seq7 100 3e-16 seq2 96.9 3e-15 >seq4 Length=12290766 Score = 235 bits (260), Expect = 5e-57 Identities = 733/1117 (66%), Gaps = 27/1117 (2%) Strand=Plus/Minus Query 145051 GTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGT 145110 || |||||| ||||| |||||||| || | |||||| || | || ||| | ||||| || Sbjct 1759298 GTGCTGATTCACGACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGT 1759239 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 | | ||||| || || ||||| |||| ||||| || |||| || |||||||| Sbjct 1759238 GTACGGTTCGGTCGATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGG 1759179 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAG--CGTACCC 145228 |||| | || |||||||| | |||| || ||| | || || | || ||| Sbjct 1759178 AGCCAAAAGTAGCGAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACC- 1759120 Query 145229 CAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTG 145288 ||||||| | || || | ||| ||||||||||||||||||| | || | ||| Sbjct 1759119 -AATCCCACAAATTTGTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTG 1759061 Query 145289 GCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTT-GGCGAGCTCGCAACTCGC 145347 | || |||| | | | || || | || | |||| ||| || |||||||| || Sbjct 1759060 ACCGGTGACCCTTCATAAG-TCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGC 1759002 Query 145348 CTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATC 145407 ||||| |||||| |||||| || ||| |||||||| ||| || | || || Sbjct 1759001 CTCCAAGGCGCCGTAATAAAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGG 1758942 Query 145408 GCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCC 145467 ||| || | ||||| ||||| || | || ||||| || || ||||| | || | || Sbjct 1758941 GCTATCAAAAGGCATTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCC 1758882 Query 145468 GATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCG-ATAGGATATCGATTACGGT 145526 | |||| || || || | | | |||| || | | |||||| ||| | | Sbjct 1758881 CACCGGCCTGTGGCGCAGATTCGACTTACGCGCC-TCTGGCAAAGGATAGTAATTCAGAT 1758823 Query 145527 CGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGT 145586 | || | ||| ||||| || | || || || || || | | |||||| | ||||| Sbjct 1758822 CAATGACTTTGTTCAAATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTTAAAGT 1758763 Query 145587 C-AAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAA 145645 | | ||| ||| ||| | ||| | | || |||||||| || ||||| ||||| Sbjct 1758762 CGTAGCCGCTCCT-GTCCGCTTTCACGAACATGTTTACGGCGATTGAGGCCAAGTTACAG 1758704 Query 145646 ACTGCCGTCTCCTCGGCGTCGCTGT--ATTGTACGATCTCGGCGCACAAATTGCTACATT 145703 || || | || |||| || | ||| | | || || || | ||| |||||||| | Sbjct 1758703 ACGGCGATTTCGTCGG-GT-GATGTAAACTCGACTATTTCCGTGCATAAATTGCTGCTCC 1758646 Query 145704 TGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGT 145763 |||| || || | |||||| || || ||||||||||| || ||||| ||||||||||||| Sbjct 1758645 TGATAGTGCCTAAATTTTGTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATGT 1758586 Query 145764 ACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGC---AAGTCCTGCGCAC 145820 | || ||||||||||||||| | ||| || | | || | |||| |||| Sbjct 1758585 AAGGGGTGCCAGTCTCCACCTGGG---AGACGCAAATAGCGCGCCAAACGTCCCGCGCTG 1758529 Query 145821 GCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGG 145880 | | ||| ||||| || || |||||||| ||| | | || ||| | Sbjct 1758528 GTAACTGTCTAACATAGCGACCGTCAGTCTCGTATTTTTCGTACAATTTTTCGAACTCTT 1758469 Query 145881 AACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGT 145940 || | ||||||| ||||| || ||| || ||||||||||| |||||| ||| Sbjct 1758468 CGCCCCAACAATCGGCAAGGCCTGGTGACTGGTGTGGACACATCAGGGACCATTTCTCGT 1758409 Query 145941 TGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--G 145998 | || || || ||| ||||| || ||| ||||| ||| | | |||||||| | Sbjct 1758408 CGTTTTTCACCCGGCGCATGAACAAGTCAGGCGTCCACAAAGCGAAGAACAAGTCGCGTG 1758349 Query 145999 CGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGC 146058 | ||| || | ||| ||| ||||| |||||| || | | | | || || || Sbjct 1758348 CCCTTAGC--TGCTCCTTCCCCGTGTTTTTCTTCAAGTTTAAAAAATCCAAAATATCGGC 1758291 Query 146059 GTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCAC 146115 ||||| || || | || | ||| || || || |||| || || |||||||| Sbjct 1758290 ATGCCAAGGCTCGAGGTAAATAGCGCAAGCCCCCGGTCTTTTGTTCCCCCCTTGGTCCAC 1758231 Query 146116 GTGACGTACCATGTTGTTAAAGACGCGCACCATGGGC 146152 || || | ||||||||| ||||||| | |||| Sbjct 1758230 GTAGCGCGCGGAGTTGTTAAAAACGCGCAAAACGGGC 1758194 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| |||||||| | ||| || ||||| || |||||||||||| | Sbjct 488939 CCACCTCGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 488998 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||| || || || | || |||||||| || || || || Sbjct 488999 AAAGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGA 489058 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||| |||| | || | || || | | ||||| Sbjct 489059 ATGCCTTCCTTGTCCTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACC 489118 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| |||||||| |||||||| ||||| Sbjct 489119 TCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165 >seq5 Length=15459558 Score = 114 bits (126), Expect = 1e-20 Identities = 342/518 (66%), Gaps = 10/518 (2%) Strand=Plus/Plus Query 45796 GAGGAGGTGGATTTGTCGAAAGACTGCGATGACTTCACGTCTAAATTGAACGATGACGAG 45855 || || || |||||||||||||| | || |||| | | ||| |||| ||| || Sbjct 2624258 GAAGAAGTAGATTTGTCGAAAGATTTGGACGACTGGAAGAACAAACTGAATTCTGATGAA 2624317 Query 45856 CGCTATTTTATAAAGCACGTGTTAGCtttttttGCGGCCGCCGACAGCATTGTCAACATT 45915 ||||| || || |||||| | || ||||| || ||| | ||| | || |||||| Sbjct 2624318 CGCTACTTCATTTCGCACGTTCTTGCATTTTTCGCAGCCTCTGACGGAATCGTCAACGAA 2624377 Query 45916 AATTTGATCGAGTACATGCAGC-AGAACGTGCCGGAGCTAGAGGCGCAATACTTTTACAA 45974 || | ||||| | | |||| || | |||| | | || || | | ||||||| Sbjct 2624378 AACCTCGTCGAG-AGGTTCAGCCAGGAGGTGCAAGTGACCGAAGCTCGCTGCTTTTACGG 2624436 Query 45975 CCAGCAAGT-GCTCATCGAGTGCGTGCACACGGAGATGTACAATTTGTTAATTCACCAGT 46033 ||| | ||| || || | | || |||||||||||| |||| || | || Sbjct 2624437 GTTCCAAATCGCT-ATTGAAAACATCCATTCGGAGATGTACAGCATGTTGATCGAAACGT 2624495 Query 46034 TGATTTCGGACGAACACGAGCGCGACACGCTGCTTAATGCGTTTGA-ACGTATGCCGTGC 46092 ||||| || || ||| || || | |||||| | || ||| |||| || Sbjct 2624496 ACATTTCTGAGCCCCAGGAGAAGGAGTTCTTGTTCAATGCGATCGAGACGC-TGCCCTGT 2624554 Query 46093 GTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCC 46152 || ||||| |||||||||| || |||||| ||||||| | ||||||||| | | Sbjct 2624555 GTTAAGAAGAAGGCCGACTGGGCCTTGCTGTGGATAAACAGCAAGAACGCGACTTTTGGC 2624614 Query 46153 GAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCC 46212 || || || ||||| ||||| || || || | || || |||||||| ||||| | Sbjct 2624615 GAACGAATCGTGGCGTTTGCCGCCGTCGAAGGGATTTTCTTCTCTGGCAGCTTTGCTTCG 2624674 Query 46213 ATCTTTTACATCAAAACCAAGGGCATC--ATGCCCGGCCTGACGTTTAGCAACGAGCTGA 46270 || || | | |||| | || ||| ||||| || || || ||| ||| || |||| Sbjct 2624675 ATTTTCTGGCTTAAAA--AGCGGAATCTTATGCCAGGTCTCACATTTTCCAATGAACTGA 2624732 Query 46271 TATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGT 46308 | ||| | ||||||||||| ||| || ||||| ||| Sbjct 2624733 TTTCGAGGGACGAGGGCCTACATTGCGATTTTGCCTGT 2624770 >seq7 Length=16482863 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || ||||| || || || | ||| || ||||| || |||||||||||| Sbjct 10794071 GCCTCCCCTCAGACGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGA 10794130 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||| || || || || || ||| | || |||||||| || || ||||| Sbjct 10794131 CAAGGTGCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGG 10794190 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || |||| | ||| | ||||| | || ||| | Sbjct 10794191 GATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAAC 10794250 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || || ||||| || ||||| Sbjct 10794251 TTCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCAT 10794298 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | |||||||| || || || | ||| || ||||| || ||||||||||| Sbjct 10793843 GCCACCTCTCAAACGCAATACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGA 10793902 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| ||| || ||||| || || || || |||| || | || ||||| || || Sbjct 10793903 GAGGGTACGCCCATCTTCTAGTTGTTTCCCGGCAAAGATCAATCTTTGTTGGTCTGGTGG 10793962 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| || || || || ||||| | || | || |||| | |||| Sbjct 10793963 GATCCCTTCCTTATCCTGAATCTTAGCCTTGACGTTTTCAATCGTGTCGGAAGGTTCGAC 10794022 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | |||| |||||| || || | || || ||||| ||||||||| || Sbjct 10794023 TTCCAAAGTAATGGTTTTCCCAGTCAAGGTCTTGACGAAGATCTGCATGCCT 10794074 >seq2 Length=15265516 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCT 131085 |||| || | ||| || ||||| || || ||||||||| | ||| || ||||| Sbjct 12970333 ACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGAGAGGGTACGTCCATCCTCG 12970274 Query 131086 AGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTG 131145 ||||| || || ||| |||| | ||| ||||| ||||| || || || ||||| || || Sbjct 12970273 AGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCCTCTTTATCC-TG 12970215 Query 131146 ATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTT 131204 | | | |||| | | ||| | |||||| | | ||||| || | ||| | ||| || Sbjct 12970214 AATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCGACCTCAAGGGTGATGGTCTT 12970155 Query 131205 ACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || ||||| |||||||||||||| Sbjct 12970154 GCCAGTCAGGGTTTTAACGAAAATCTGCAT 12970125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472000515866880