Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4 167 2e-36 seq7 132 3e-26 seq1450 127 1e-24 seq1176 127 1e-24 seq8 127 1e-24 seq72 122 6e-23 seq1993 111 1e-19 seq2 104 2e-17 >seq4 Length=12290766 Score = 167 bits (184), Expect = 2e-36 Identities = 214/295 (73%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 6156 ACCACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAA 6215 || || ||||| | | | ||||| ||||| | || || | || || |||||||| Sbjct 3539733 ACAACCATGGGCAGCGTCAACGTCAATCGCAGCGTCAGCGATGTCTTTTATCGCTACAAG 3539674 Query 6216 ATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTC 6275 ||||| || | ||||| || ||||| || || ||||| || ||||| |||||||| Sbjct 3539673 ATGCCCCGGCTGATGGCCAAAGTGGAGGGCAAAGGTAACGGCATCAAAACGGTCATTGTT 3539614 Query 6276 AACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTC 6335 || ||| | ||||| || ||||| || || || || ||||||| |||||||| || || Sbjct 3539613 AATATGGCCGAAGTGGCCAAGGCCCTAGGCCGACCCCCCACCTATCCGACGAAGTACTTT 3539554 Query 6336 GGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAAC 6395 || ||||| | ||||||||||| || || ||| ||||||||| | || ||||| || Sbjct 3539553 GGCTGCGAGTTGGGCGCTCAGACTCAATTCGATTTCAAAAACGAAAGATTTATCGTCAAT 3539494 Query 6396 GGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGT 6450 |||||||| | | | ||| || || ||| |||| || ||||| || || |||| Sbjct 3539493 GGATCGCACGATGCGGGCAAACTACAAGACCTACTCGATGGCTTCATCCGGAAGT 3539439 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||| || |||||| || |||||||| ||| ||||| || || |||||||| ||| Sbjct 488939 CCACCTCGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 488998 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| ||| | || || | ||||| || ||||| || | || |||||||||| ||| Sbjct 488999 AAAGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGA 489058 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| |||||| || ||||| | || || ||| | || || Sbjct 489059 ATGCCTTCCTTGTCCTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACC 489118 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || |||| ||||||||||| || ||||| Sbjct 489119 TCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165 >seq7 Length=16482863 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||||||||||||| ||||| ||||| ||| ||||| || || |||||||| || Sbjct 10793844 CCACCTCTCAAACGCAATACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGAG 10793903 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || |||| |||||| |||||||| || | | |||||| || | ||| Sbjct 10793904 AGGGTACGCCCATCTTCTAGTTGTTTCCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGG 10793963 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| || ||| ||| || ||| || || | | || || | ||| ||| Sbjct 10793964 ATCCCTTCCTTATCCTGAATCTTAGCCTTGACGTTTTCAATCGTGTCGGAAGGTTCGACT 10794023 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || ||||| ||||| || |||||||| || ||||| ||||||||| Sbjct 10794024 TCCAAAGTAATGGTTTTCCCAGTCAAGGTCTTGACGAAGATCTGCATG 10794071 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||| | |||||||||||| || |||||| ||||| || ||||||||||| || Sbjct 10792932 CCACCTCGGAGACGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAA 10792991 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | ||| |||| |||| ||||||||| ||||| || | | |||||| || | ||| Sbjct 10792992 AGAGTACGGCCGTCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTGGG 10793051 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || |||||||| ||| || ||| || |||| | ||||| | ||| ||| Sbjct 10793052 ATACCCTCTTTGTCTTGAATCTTAGCCTTGACGTTCTCAATTGTATCAGAAGGTTCGACT 10793111 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || ||||| || |||| ||||| ||||| || |||||| Sbjct 10793112 TCCAGGGTGATGGTTTTGCCAGTCAGAGTTTTAACGAAAATTTGCATG 10793159 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||| | |||||||||||| || || ||| || ||||| |||||||| || || Sbjct 10793616 CCACCTCGGAGACGCAACACCAAGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCGGAA 10793675 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | ||| |||| || | ||||||||| || || || | | |||||| || | ||| Sbjct 10793676 AGAGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGTGGG 10793735 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| ||||| || || ||| ||||||| | ||||| | ||| || Sbjct 10793736 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTATCAGAAGGTTCGACC 10793795 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || || || || |||| |||||| ||||| || |||||| Sbjct 10793796 TCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTGACGAAAATTTGCATG 10793843 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| |||| || |||||| || ||||| || || || ||||||||||| || || | Sbjct 10792702 TACCTCCTCGCAGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCG 10792761 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | |||||| || ||||| || | | || ||||| | | Sbjct 10792762 ACAGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAG 10792821 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||| ||| ||||| || ||||||| | || ||| ||| | Sbjct 10792822 GAATGCCTTCTTTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTA 10792881 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||| || || || || || ||||||||||| |||||||| || |||||| Sbjct 10792882 CTTCCAAAGTGATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCATG 10792931 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | |||||||||||| || || || ||| || || || ||||| || || Sbjct 10793388 CCACCACGGAGACGCAACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAG 10793447 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || || ||||| ||||| || || | | ||| ||||| | ||| Sbjct 10793448 AGTGTGCGACCATCCTCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGA 10793507 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || ||||||||| |||||| |||||| || | || || || | ||| ||| Sbjct 10793508 ATCCCCTCTTTGTCCTGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACT 10793567 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || ||||| || ||||| || |||||||| || |||||| Sbjct 10793568 TCAAGAGTGATCGTTTTTCCAGTCAAAGTCTTCACGAAAATTTGCATG 10793615 >seq1450 Length=16023 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||||||||||| | ||||| || |||||||| Sbjct 478 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTGGGTAGGGACAGCGGGAATCTCGT 537 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 538 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 572 >seq1176 Length=17792 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||||||||||| | ||||| || |||||||| Sbjct 17019 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTGGGTAGGGACAGCGGGAATCTCGT 16960 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 16959 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 16925 Score = 122 bits (134), Expect = 6e-23 Identities = 74/77 (96%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8738 CTCTCTCTTCAA-GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 8680 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 8679 GGTCATATTTAGCCTTA 8663 >seq8 Length=14581690 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||||||||||| | ||||| || |||||||| Sbjct 14503477 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTGGGTAGGGACAGCGGGAATCTCGT 14503418 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 14503417 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 14503383 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||||||||||| | ||||| || ||||| || Sbjct 797315 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTGGGTAGGGACAGCGGGAATCTAGT 797256 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 797255 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 797221 >seq72 Length=849 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||||||||||| | ||||| || ||||| || Sbjct 51 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTGGGTAGGGACAGCGGGAATCTAGT 110 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 111 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 145 >seq1993 Length=18336 Score = 111 bits (122), Expect = 1e-19 Identities = 83/95 (87%), Gaps = 7/95 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||| ||||| |||||||||||||||||| | ||||| || |||||||| Sbjct 18238 AAGCCCGTTCC-TTGGCAGTGGTTTCGCTAGATAGTGGGTAGGGACAGCGGGAATCTCGT 18296 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || ||| |||||||||||||||||||||||||||| Sbjct 18297 TA-TCCATTCATGCGCGTCACTAATTAGATGACGA 18330 >seq2 Length=15265516 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | | || || | ||||| ||| ||||| || ||||||||||| || Sbjct 12970351 CCACCTCTGAGTCTTAAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGAG 12970292 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | |||| | || || | ||||| ||||| || || || ||||| ||||| | ||| Sbjct 12970291 AGGGTACGTCCATCCTCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGGA 12970232 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || ||||| ||| ||| || |||||||||| || ||||||| || || Sbjct 12970231 ATCCCCTCTTTATCCTGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCGACC 12970172 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || |||| |||||| ||||| |||||||| Sbjct 12970171 TCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTAACGAAAATCTGCAT 12970125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334938700924142