Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq4 167 2e-36
seq7 132 3e-26
seq1450 127 1e-24
seq1176 127 1e-24
seq8 127 1e-24
seq72 122 6e-23
seq1993 111 1e-19
seq2 104 2e-17
>seq4
Length=12290766
Score = 167 bits (184), Expect = 2e-36
Identities = 214/295 (73%), Gaps = 0/295 (0%)
Strand=Plus/Minus
Query 6156 ACCACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAA 6215
|| || ||||| | | | ||||| ||||| | || || | || || ||||||||
Sbjct 3539733 ACAACCATGGGCAGCGTCAACGTCAATCGCAGCGTCAGCGATGTCTTTTATCGCTACAAG 3539674
Query 6216 ATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTC 6275
||||| || | ||||| || ||||| || || ||||| || ||||| ||||||||
Sbjct 3539673 ATGCCCCGGCTGATGGCCAAAGTGGAGGGCAAAGGTAACGGCATCAAAACGGTCATTGTT 3539614
Query 6276 AACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTC 6335
|| ||| | ||||| || ||||| || || || || ||||||| |||||||| || ||
Sbjct 3539613 AATATGGCCGAAGTGGCCAAGGCCCTAGGCCGACCCCCCACCTATCCGACGAAGTACTTT 3539554
Query 6336 GGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAAC 6395
|| ||||| | ||||||||||| || || ||| ||||||||| | || ||||| ||
Sbjct 3539553 GGCTGCGAGTTGGGCGCTCAGACTCAATTCGATTTCAAAAACGAAAGATTTATCGTCAAT 3539494
Query 6396 GGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGT 6450
|||||||| | | | ||| || || ||| |||| || ||||| || || ||||
Sbjct 3539493 GGATCGCACGATGCGGGCAAACTACAAGACCTACTCGATGGCTTCATCCGGAAGT 3539439
Score = 125 bits (138), Expect = 5e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||||| || |||||| || |||||||| ||| ||||| || || |||||||| |||
Sbjct 488939 CCACCTCGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 488998
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
||| ||| | || || | ||||| || ||||| || | || |||||||||| |||
Sbjct 488999 AAAGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGA 489058
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||| |||||| |||||| || ||||| | || || ||| | || ||
Sbjct 489059 ATGCCTTCCTTGTCCTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACC 489118
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || || || |||| ||||||||||| || |||||
Sbjct 489119 TCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165
>seq7
Length=16482863
Score = 132 bits (146), Expect = 3e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||||||||||||||| ||||| ||||| ||| ||||| || || |||||||| ||
Sbjct 10793844 CCACCTCTCAAACGCAATACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGAG 10793903
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| ||| | || |||| |||||| |||||||| || | | |||||| || | |||
Sbjct 10793904 AGGGTACGCCCATCTTCTAGTTGTTTCCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGG 10793963
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||||| || ||| ||| || ||| || || | | || || | ||| |||
Sbjct 10793964 ATCCCTTCCTTATCCTGAATCTTAGCCTTGACGTTTTCAATCGTGTCGGAAGGTTCGACT 10794023
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| || ||||| ||||| || |||||||| || ||||| |||||||||
Sbjct 10794024 TCCAAAGTAATGGTTTTCCCAGTCAAGGTCTTGACGAAGATCTGCATG 10794071
Score = 127 bits (140), Expect = 1e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||||| | |||||||||||| || |||||| ||||| || ||||||||||| ||
Sbjct 10792932 CCACCTCGGAGACGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAA 10792991
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | ||| |||| |||| ||||||||| ||||| || | | |||||| || | |||
Sbjct 10792992 AGAGTACGGCCGTCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTGGG 10793051
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| || |||||||| ||| || ||| || |||| | ||||| | ||| |||
Sbjct 10793052 ATACCCTCTTTGTCTTGAATCTTAGCCTTGACGTTCTCAATTGTATCAGAAGGTTCGACT 10793111
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| | || || ||||| || |||| ||||| ||||| || ||||||
Sbjct 10793112 TCCAGGGTGATGGTTTTGCCAGTCAGAGTTTTAACGAAAATTTGCATG 10793159
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||||| | |||||||||||| || || ||| || ||||| |||||||| || ||
Sbjct 10793616 CCACCTCGGAGACGCAACACCAAGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCGGAA 10793675
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | ||| |||| || | ||||||||| || || || | | |||||| || | |||
Sbjct 10793676 AGAGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGTGGG 10793735
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||||| ||||| || || ||| ||||||| | ||||| | ||| ||
Sbjct 10793736 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTATCAGAAGGTTCGACC 10793795
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| || || || || || || |||| |||||| ||||| || ||||||
Sbjct 10793796 TCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTGACGAAAATTTGCATG 10793843
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
|||| |||| || |||||| || ||||| || || || ||||||||||| || || |
Sbjct 10792702 TACCTCCTCGCAGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCG 10792761
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
||| || | || || | |||||| || ||||| || | | || ||||| | |
Sbjct 10792762 ACAGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAG 10792821
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | ||||||||| ||| ||||| || ||||||| | || ||| ||| |
Sbjct 10792822 GAATGCCTTCTTTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTA 10792881
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|||| || || || || || ||||||||||| |||||||| || ||||||
Sbjct 10792882 CTTCCAAAGTGATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCATG 10792931
Score = 96.9 bits (106), Expect = 2e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | | |||||||||||| || || || ||| || || || ||||| || ||
Sbjct 10793388 CCACCACGGAGACGCAACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAG 10793447
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || | || || || ||||| ||||| || || | | ||| ||||| | |||
Sbjct 10793448 AGTGTGCGACCATCCTCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGA 10793507
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| || ||||||||| |||||| |||||| || | || || || | ||| |||
Sbjct 10793508 ATCCCCTCTTTGTCCTGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACT 10793567
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| | || || ||||| || ||||| || |||||||| || ||||||
Sbjct 10793568 TCAAGAGTGATCGTTTTTCCAGTCAAAGTCTTCACGAAAATTTGCATG 10793615
>seq1450
Length=16023
Score = 127 bits (140), Expect = 1e-24
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||| |||||||||||||||||| | ||||| || ||||||||
Sbjct 478 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTGGGTAGGGACAGCGGGAATCTCGT 537
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 538 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 572
>seq1176
Length=17792
Score = 127 bits (140), Expect = 1e-24
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||| |||||||||||||||||| | ||||| || ||||||||
Sbjct 17019 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTGGGTAGGGACAGCGGGAATCTCGT 16960
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 16959 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 16925
Score = 122 bits (134), Expect = 6e-23
Identities = 74/77 (96%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8738 CTCTCTCTTCAA-GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 8680
Query 20007 GGTAATATTTAGCCTTA 20023
||| |||||||||||||
Sbjct 8679 GGTCATATTTAGCCTTA 8663
>seq8
Length=14581690
Score = 127 bits (140), Expect = 1e-24
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||| |||||||||||||||||| | ||||| || ||||||||
Sbjct 14503477 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTGGGTAGGGACAGCGGGAATCTCGT 14503418
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 14503417 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 14503383
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||| |||||||||||||||||| | ||||| || ||||| ||
Sbjct 797315 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTGGGTAGGGACAGCGGGAATCTAGT 797256
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 797255 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 797221
>seq72
Length=849
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||| |||||||||||||||||| | ||||| || ||||| ||
Sbjct 51 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTGGGTAGGGACAGCGGGAATCTAGT 110
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 111 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 145
>seq1993
Length=18336
Score = 111 bits (122), Expect = 1e-19
Identities = 83/95 (87%), Gaps = 7/95 (7%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||| ||||| |||||||||||||||||| | ||||| || ||||||||
Sbjct 18238 AAGCCCGTTCC-TTGGCAGTGGTTTCGCTAGATAGTGGGTAGGGACAGCGGGAATCTCGT 18296
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|| ||| ||||||||||||||||||||||||||||
Sbjct 18297 TA-TCCATTCATGCGCGTCACTAATTAGATGACGA 18330
>seq2
Length=15265516
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||| | | || || | ||||| ||| ||||| || ||||||||||| ||
Sbjct 12970351 CCACCTCTGAGTCTTAAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGAG 12970292
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| |||| | || || | ||||| ||||| || || || ||||| ||||| | |||
Sbjct 12970291 AGGGTACGTCCATCCTCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGGA 12970232
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| || ||||| ||| ||| || |||||||||| || ||||||| || ||
Sbjct 12970231 ATCCCCTCTTTATCCTGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCGACC 12970172
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || || || |||| |||||| ||||| ||||||||
Sbjct 12970171 TCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTAACGAAAATCTGCAT 12970125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334938700924142
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