Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq4 347 2e-90
seq5 277 2e-69
>seq4
Length=12290766
Score = 347 bits (384), Expect = 2e-90
Identities = 1221/1900 (64%), Gaps = 49/1900 (3%)
Strand=Plus/Minus
Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900
|| |||| |||||||||||||||| | || |||||||| | || ||||||||| ||
Sbjct 1759639 TTATCCACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAATAGTACATCCCT 1759580
Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA----ATAACT 61956
|| |||| ||| | ||| ||||| |||||||| | || || |||| |
Sbjct 1759579 GTCTTTAAACCCTTATCCCACCCGTAGAAATGCAT----GGAAGACATGACCCCATAATT 1759524
Query 61957 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 62016
||| | || ||||| |||||||| || ||||| || || || || || || || || ||
Sbjct 1759523 CGGGGCCGCAATATGAATATTCATCGACTGACTCTGGTCAATAAACGCGCCTCTATCAGC 1759464
Query 62017 AGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 62076
||||| | ||||| || || | ||| ||||| | |||||||| | | | || |
Sbjct 1759463 CGCCATATCAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTTGTTTCAA 1759404
Query 62077 ATCTTCTGGAA-----GGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTC 62131
||| || |||| || ||| || |||| || ||| || || |||||| ||||
Sbjct 1759403 ATCGTCGGGAATCCCCGGAATGTTTT--GAATCGAACCATAATTCGCAATAATCTGATTC 1759346
Query 62132 TTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 62191
|| ||| ||| | ||| | ||||| || ||| | | || || ||| |||| ||
Sbjct 1759345 TTCATCGTATCGTCCCAAAGCCCCCTCTCAGTCAAATCCTTCAGCAGGTGCTGATTCACG 1759286
Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251
|||||||| || |||||||| || | || || |||||| || ||||||||
Sbjct 1759285 ACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTACGGTTCGGTC 1759226
Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311
|| |||||||| ||||||||||| ||||| || || || ||||| || |||| | ||
Sbjct 1759225 GATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAAAAGTAGC 1759166
Query 62312 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 62371
||| | || ||||||| | |||||| | ||| | | ||||| ||| | ||
Sbjct 1759165 GAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCCACAAATTT 1759106
Query 62372 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 62431
| || || || | | ||| | |||| | || ||| ||
Sbjct 1759105 GTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGGTGACCCTTCA 1759046
Query 62432 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62491
|| || || || || || | ||| || || ||||| ||||| ||||| || || ||||||
Sbjct 1759045 TAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGGCGCCGTAA 1758986
Query 62492 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAA 62551
|||| |||||||| || | | ||||| ||| || ||| |||||||||| || |
Sbjct 1758985 TAAAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGGGCTATCAAAAGG--CA 1758928
Query 62552 TT--TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609
|| | |||||| ||||| || || | || ||||| ||||| || | || || || |
Sbjct 1758927 TTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGGCCTGTGGC 1758868
Query 62610 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 62669
| ||| || | || ||||| | |||||| ||||| | ||| || | ||| || |
Sbjct 1758867 GCAGATTCGACTTACGCGCCTCTGGCAAAGGATAGTAATTCAGATCAATGACTTTGTTCA 1758808
Query 62670 GATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC-AAATCGCCCAT-- 62726
||| | | | |||||| | ||||||| ||| ||| || | ||| | |
Sbjct 1758807 AATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTTAAAGTCGTAGCCGCTCCTGT 1758748
Query 62727 ---CTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 62783
|| | || |||||||| | || | || |||| ||||| ||||| | || | |
Sbjct 1758747 CCGCTTTCACGAACATGTTTACGGCGATTGAGGCCAAGTTACAGACGGCGATTTCGTCGG 1758688
Query 62784 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 62843
| | | | | ||| || ||||| | ||| || | | |||| || ||||||||||
Sbjct 1758687 GTGATGTAAACTCGACTATTTCCGTGCATAAATTGCTGCTCCTGATAGTGCCTAAATTTT 1758628
Query 62844 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 62903
|||| || || || ||||||| || || || || || ||| | || || ||||| || |
Sbjct 1758627 GTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATGTAAGGGGTGCCAGTCTCCA 1758568
Query 62904 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-CTTTATTATAGATTTGTATCTC 62962
||| || | ||| || ||| ||| | || || | | | | | || |
Sbjct 1758567 CCTGGGAGACGCAAATAGCGCGCCAAACGTCCCGCGCTGGTAACTGTCTA-ACATAGCGA 1758509
Query 62963 TTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGT 63022
|| | |||||| | |||||| ||||||||| || |||||| || | | ||
Sbjct 1758508 CCGTCAGTCTCGTATTTTTCGTACAATTTTTCGAACTCTTCGCCCCAACAATCGGCAAGG 1758449
Query 63023 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63082
|| || | | | |||||||||| ||||| | |||| | ||||| || |||
Sbjct 1758448 CCTGGTGACTGGTGTGGACACATCAGGGACCATTTCTCGTCGTTTTTCACCCGGCGCATG 1758389
Query 63083 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63142
|| | ||||| |||| | ||| | || | || | | || | | ||| || ||
Sbjct 1758388 AACAAGTCAGGCGTCCACAAAGCGAAGAACAAGTCGCGTGCCCTTAGCTGCTCCTTCCCC 1758329
Query 63143 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63202
|| || || || | | | || ||| |||||| | |||||| || || | ||| ||
Sbjct 1758328 GTGTTTTTCTTCAAGTTTAAAAAATCCAAAATATCGGCATGCCAAGGCTCGAGGTAAATA 1758269
Query 63203 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63262
|| | | || || | |||||| || || || || | ||| | |||| ||| ||| ||
Sbjct 1758268 GCGCAAGCCCCCGGTCTTTTGTTCCCCCCTTGGTCCACGTAGCGCGCGGAGTTGTTAAAA 1758209
Query 63263 ACTCTCAACATTGGAATAATAC---------CATTGGATGTACC------ATTGGTCCCT 63307
|| | ||| | || | ||| | | |||| || || | ||||||
Sbjct 1758208 ACGCGCAAAACGGGCACAATCCCGTCTGAGACTTTGGGGGTGCCGGCCAAAGTGGTCCGA 1758149
Query 63308 GAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 63367
|| | | | || |||| || | || ||| | |||| || |||||| ||
Sbjct 1758148 AAGGT---GGTGCCTTTGGCCCGTAAGTTGTGAATACTGACGCCTAGACCGCCTGCCGTT 1758092
Query 63368 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 63427
|| || || | || ||| | | || | |||||||| | | | || ||
Sbjct 1758091 TTGGAAATCATGGCACATTGGGTCAAACAGCGCGAAATGCCCTCGAGATTGTCCTCGGGG 1758032
Query 63428 A-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 63486
| |||| | ||||| ||| || | |||| | ||| | || || | ||
Sbjct 1758031 AGAGTTACG-AGAAAGCAGGAGGAGAGTTGGGGTTTGGGTGTTGCAGCTGAGAAGAGTGT 1757973
Query 63487 AGGAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGT 63545
|||| ||||| || || ||||||| || | |||| ||||| || || || |||||||
Sbjct 1757972 AGGACTGGCGTGTGTGAAGTATTTTTCTGACATGTAG-TTGTAAGTTTCGATGGCTGAGT 1757914
Query 63546 CTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 63605
| || || | || || || || ||||| ||||||| |||||| || || | ||||
Sbjct 1757913 CGATGTCTGAGCCGTGGATGCCGACAGCGACGCGCATTAGCATGTGTTGGGGGCGCTCAA 1757854
Query 63606 CGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63665
|||| ||| ||| ||||| | ||||||||| || | ||||| ||||| || || |
Sbjct 1757853 CGATTTTGCCGTTGATTTTAAGCAAGTAGGAACGCTCGAGGGTTTTGAAACCGAAGTAAT 1757794
Query 63666 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705
|||| || || || || ||||| || || ||||||||
Sbjct 1757793 TGTAAGAGAAATCGCGATCGTAGATTATGCAAGAGTTGAG 1757754
Score = 102 bits (112), Expect = 1e-16
Identities = 330/508 (65%), Gaps = 6/508 (1%)
Strand=Plus/Minus
Query 62440 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGT 62499
||| || || || | || || | ||| |||| || || || || | ||||| | ||
Sbjct 1762454 GTACGGCCCATCTCTTTCGGCAATTTCGGAACTTGCTTCCAAGGCGGCATAATACAAAGT 1762395
Query 62500 TTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAG 62559
|||||| || | | ||| || | || ||| |||| ||||| || | | |||
Sbjct 1762394 TTCGAAAATTTGCACATTGAGTGAACGAGCCTCCGGGCTCTCAAACGGCATACGCAGGAG 1762335
Query 62560 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62619
||| || | || || || ||||| || || || ||||| |||| |||||| ||| ||
Sbjct 1762334 AATGAAAGTATCGGCCAAACCTTGCACCCCTATTCCGATCGGTCGGTGTCTCAAATTCGA 1762275
Query 62620 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 62679
|| ||| || || | || || | | | ||||| || ||||||||| ||
Sbjct 1762274 CGTTCGAGCCTCAGGGCTCGGGTACGCACTTACGTCTATCGCCTTGTTGAGATTTTTGGT 1762215
Query 62680 AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATCG--CCCATCT--ATT-AC 62733
| |||||||| | |||| || ||||| || || || || ||| ||
Sbjct 1762214 TAAGGTCTTGACCACTTGTTTCAACTTTTCGAAATCGTAACCGTTCCGTTCCGGATTCAC 1762155
Query 62734 AAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATA 62793
|||||||| | |||||| || ||| | ||||| |||| | || | || | ||
Sbjct 1762154 GAACATGTTTAGTGCAACTGAGGCCGTAATACAAGCGGCAATTTCGTCAGAAGAGCTGTA 1762095
Query 62794 TTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 62853
||| ||| || |||| | | | |||| ||||| || ||||||||||| || || ||
Sbjct 1762094 TTGAATTGATTCGGTGCTCAAACTGCTACTTTTGATCGTCCCTAAATTTTGCTGGTTGCT 1762035
Query 62854 CTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 62913
||||| || || |||||||| || | ||| | || | || ||||| ||||| || |
Sbjct 1762034 TTTTTTATTGCAAGCATCCTTGTACAAAATATAGGGCGAGCCTGTTTCCATCTGTGAGAC 1761975
Query 62914 TATAATCGCTTTCCAGACGACTCGAGCC 62941
||||| ||||||| | || |||
Sbjct 1761974 GCAGATCGCGCGCCAGACGTCCCGTGCC 1761947
>seq5
Length=15459558
Score = 277 bits (306), Expect = 2e-69
Identities = 629/939 (67%), Gaps = 14/939 (1%)
Strand=Plus/Minus
Query 32313 CTTTAAAAGTCAACATCTAGAGAAAAATGATTGTCTTCTTGAGACATAACTCCCATTTTT 32372
||||||||||| | ||||||| | | | | || | | || | ||||| | ||
Sbjct 2625117 CTTTAAAAGTCCAAATCTAGATGGTACTCCTCGGTTTGCTCACACGTGACTCCGCTCTTC 2625058
Query 32373 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCC 32432
|||||||| ||||| || || || ||||| || || ||||| || ||| | |
Sbjct 2625057 TGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTGGAAATAATCGTC 2624998
Query 32433 ATGAAATCGAATGGATTG-GTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 32491
||||||||||| ||||| || | || || ||||| | | ||||| || | |||
Sbjct 2624997 ATGAAATCGAACGGATTCTGTGAG-TTGTAGATTTTCTCGCACCCCAACTCGCCCAACAA 2624939
Query 32492 TCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 32551
||| || || |||||||| || ||| ||||| | || |||||||| || | |
Sbjct 2624938 TCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATTCCAATCATGCT 2624879
Query 32552 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 32611
||||| | ||| |||| | ||||| | || || |||||||||| ||||| |
Sbjct 2624878 GACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCTTGGATAAT-GC 2624820
Query 32612 TCTTACTGT-TTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 32670
| | | | ||||| ||| | || || || ||||||||||| || ||||
Sbjct 2624819 TTTGAATCCGTTCTTTGGACGGCTTCTGCACCAAGTGAGAGAACATCAAACAGGCAAAAT 2624760
Query 32671 CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 32730
|||| ||||| |||||||| || ||| | ||| |||||||| ||||| || ||||| |
Sbjct 2624759 CGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGGCATAA 2624700
Query 32731 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTA 32790
| |||||||||||||| || || || ||||| ||||| |||||||| ||||| |
Sbjct 2624699 GATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAATCCCTTCGA 2624640
Query 32791 CTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-----TATCCACTT 32845
| || ||||| || | | || || ||| || | ||| || || |||||||
Sbjct 2624639 CGGCGGCAAACGCCACGATTCGTTCGCCAAAA--GTCGCGTTCTTGCTGTTTATCCACAG 2624582
Query 32846 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905
||||| ||||||||||| || ||||| |||| ||||| || ||||| || | |
Sbjct 2624581 CAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGAACAAGAA 2624522
Query 32906 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 32965
| || || | || || || || || ||||| | || ||||| ||||||||
Sbjct 2624521 CTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTGTACATCTCCGAATG 2624462
Query 32966 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTC 33025
||||||||||| || ||||| || ||||| ||||| | ||| ||||| | || || ||
Sbjct 2624461 GATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCGGTCACTTGCACCTC 2624402
Query 33026 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33085
| || | || | | ||||| || || ||||||||| |||||| ||||| ||
Sbjct 2624401 CTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAGGCTGCGAAAAATGC 2624342
Query 33086 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCCAATCATTGAT 33142
| || || || || || ||| || | | ||| || ||||| || | |
Sbjct 2624341 AAGAACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTTGTTCTTCCAGTCGTCCAA 2624282
Query 33143 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33202
|||||| || | ||| |||||||| |||||||| || || || || | || || |
Sbjct 2624281 ATCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTCCGCTTGCTTGTATTT 2624222
Query 33203 ATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241
| ||| ||||| | || || || ||||| | |||||
Sbjct 2624221 GTCCCAAATGTCGGGGTACTGGATGGGAAAGACCACAAA 2624183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633615509727200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |