Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4 347 2e-90 seq5 277 2e-69 >seq4 Length=12290766 Score = 347 bits (384), Expect = 2e-90 Identities = 1221/1900 (64%), Gaps = 49/1900 (3%) Strand=Plus/Minus Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900 || |||| |||||||||||||||| | || |||||||| | || ||||||||| || Sbjct 1759639 TTATCCACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAATAGTACATCCCT 1759580 Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA----ATAACT 61956 || |||| ||| | ||| ||||| |||||||| | || || |||| | Sbjct 1759579 GTCTTTAAACCCTTATCCCACCCGTAGAAATGCAT----GGAAGACATGACCCCATAATT 1759524 Query 61957 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 62016 ||| | || ||||| |||||||| || ||||| || || || || || || || || || Sbjct 1759523 CGGGGCCGCAATATGAATATTCATCGACTGACTCTGGTCAATAAACGCGCCTCTATCAGC 1759464 Query 62017 AGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 62076 ||||| | ||||| || || | ||| ||||| | |||||||| | | | || | Sbjct 1759463 CGCCATATCAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTTGTTTCAA 1759404 Query 62077 ATCTTCTGGAA-----GGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTC 62131 ||| || |||| || ||| || |||| || ||| || || |||||| |||| Sbjct 1759403 ATCGTCGGGAATCCCCGGAATGTTTT--GAATCGAACCATAATTCGCAATAATCTGATTC 1759346 Query 62132 TTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 62191 || ||| ||| | ||| | ||||| || ||| | | || || ||| |||| || Sbjct 1759345 TTCATCGTATCGTCCCAAAGCCCCCTCTCAGTCAAATCCTTCAGCAGGTGCTGATTCACG 1759286 Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 |||||||| || |||||||| || | || || |||||| || |||||||| Sbjct 1759285 ACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTACGGTTCGGTC 1759226 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 || |||||||| ||||||||||| ||||| || || || ||||| || |||| | || Sbjct 1759225 GATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAAAAGTAGC 1759166 Query 62312 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 62371 ||| | || ||||||| | |||||| | ||| | | ||||| ||| | || Sbjct 1759165 GAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCCACAAATTT 1759106 Query 62372 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 62431 | || || || | | ||| | |||| | || ||| || Sbjct 1759105 GTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGGTGACCCTTCA 1759046 Query 62432 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62491 || || || || || || | ||| || || ||||| ||||| ||||| || || |||||| Sbjct 1759045 TAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGGCGCCGTAA 1758986 Query 62492 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAA 62551 |||| |||||||| || | | ||||| ||| || ||| |||||||||| || | Sbjct 1758985 TAAAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGGGCTATCAAAAGG--CA 1758928 Query 62552 TT--TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 || | |||||| ||||| || || | || ||||| ||||| || | || || || | Sbjct 1758927 TTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGGCCTGTGGC 1758868 Query 62610 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 62669 | ||| || | || ||||| | |||||| ||||| | ||| || | ||| || | Sbjct 1758867 GCAGATTCGACTTACGCGCCTCTGGCAAAGGATAGTAATTCAGATCAATGACTTTGTTCA 1758808 Query 62670 GATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC-AAATCGCCCAT-- 62726 ||| | | | |||||| | ||||||| ||| ||| || | ||| | | Sbjct 1758807 AATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTTAAAGTCGTAGCCGCTCCTGT 1758748 Query 62727 ---CTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 62783 || | || |||||||| | || | || |||| ||||| ||||| | || | | Sbjct 1758747 CCGCTTTCACGAACATGTTTACGGCGATTGAGGCCAAGTTACAGACGGCGATTTCGTCGG 1758688 Query 62784 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 62843 | | | | | ||| || ||||| | ||| || | | |||| || |||||||||| Sbjct 1758687 GTGATGTAAACTCGACTATTTCCGTGCATAAATTGCTGCTCCTGATAGTGCCTAAATTTT 1758628 Query 62844 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 62903 |||| || || || ||||||| || || || || || ||| | || || ||||| || | Sbjct 1758627 GTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATGTAAGGGGTGCCAGTCTCCA 1758568 Query 62904 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-CTTTATTATAGATTTGTATCTC 62962 ||| || | ||| || ||| ||| | || || | | | | | || | Sbjct 1758567 CCTGGGAGACGCAAATAGCGCGCCAAACGTCCCGCGCTGGTAACTGTCTA-ACATAGCGA 1758509 Query 62963 TTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGT 63022 || | |||||| | |||||| ||||||||| || |||||| || | | || Sbjct 1758508 CCGTCAGTCTCGTATTTTTCGTACAATTTTTCGAACTCTTCGCCCCAACAATCGGCAAGG 1758449 Query 63023 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63082 || || | | | |||||||||| ||||| | |||| | ||||| || ||| Sbjct 1758448 CCTGGTGACTGGTGTGGACACATCAGGGACCATTTCTCGTCGTTTTTCACCCGGCGCATG 1758389 Query 63083 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63142 || | ||||| |||| | ||| | || | || | | || | | ||| || || Sbjct 1758388 AACAAGTCAGGCGTCCACAAAGCGAAGAACAAGTCGCGTGCCCTTAGCTGCTCCTTCCCC 1758329 Query 63143 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63202 || || || || | | | || ||| |||||| | |||||| || || | ||| || Sbjct 1758328 GTGTTTTTCTTCAAGTTTAAAAAATCCAAAATATCGGCATGCCAAGGCTCGAGGTAAATA 1758269 Query 63203 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63262 || | | || || | |||||| || || || || | ||| | |||| ||| ||| || Sbjct 1758268 GCGCAAGCCCCCGGTCTTTTGTTCCCCCCTTGGTCCACGTAGCGCGCGGAGTTGTTAAAA 1758209 Query 63263 ACTCTCAACATTGGAATAATAC---------CATTGGATGTACC------ATTGGTCCCT 63307 || | ||| | || | ||| | | |||| || || | |||||| Sbjct 1758208 ACGCGCAAAACGGGCACAATCCCGTCTGAGACTTTGGGGGTGCCGGCCAAAGTGGTCCGA 1758149 Query 63308 GAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 63367 || | | | || |||| || | || ||| | |||| || |||||| || Sbjct 1758148 AAGGT---GGTGCCTTTGGCCCGTAAGTTGTGAATACTGACGCCTAGACCGCCTGCCGTT 1758092 Query 63368 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 63427 || || || | || ||| | | || | |||||||| | | | || || Sbjct 1758091 TTGGAAATCATGGCACATTGGGTCAAACAGCGCGAAATGCCCTCGAGATTGTCCTCGGGG 1758032 Query 63428 A-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 63486 | |||| | ||||| ||| || | |||| | ||| | || || | || Sbjct 1758031 AGAGTTACG-AGAAAGCAGGAGGAGAGTTGGGGTTTGGGTGTTGCAGCTGAGAAGAGTGT 1757973 Query 63487 AGGAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGT 63545 |||| ||||| || || ||||||| || | |||| ||||| || || || ||||||| Sbjct 1757972 AGGACTGGCGTGTGTGAAGTATTTTTCTGACATGTAG-TTGTAAGTTTCGATGGCTGAGT 1757914 Query 63546 CTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 63605 | || || | || || || || ||||| ||||||| |||||| || || | |||| Sbjct 1757913 CGATGTCTGAGCCGTGGATGCCGACAGCGACGCGCATTAGCATGTGTTGGGGGCGCTCAA 1757854 Query 63606 CGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63665 |||| ||| ||| ||||| | ||||||||| || | ||||| ||||| || || | Sbjct 1757853 CGATTTTGCCGTTGATTTTAAGCAAGTAGGAACGCTCGAGGGTTTTGAAACCGAAGTAAT 1757794 Query 63666 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705 |||| || || || || ||||| || || |||||||| Sbjct 1757793 TGTAAGAGAAATCGCGATCGTAGATTATGCAAGAGTTGAG 1757754 Score = 102 bits (112), Expect = 1e-16 Identities = 330/508 (65%), Gaps = 6/508 (1%) Strand=Plus/Minus Query 62440 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGT 62499 ||| || || || | || || | ||| |||| || || || || | ||||| | || Sbjct 1762454 GTACGGCCCATCTCTTTCGGCAATTTCGGAACTTGCTTCCAAGGCGGCATAATACAAAGT 1762395 Query 62500 TTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAG 62559 |||||| || | | ||| || | || ||| |||| ||||| || | | ||| Sbjct 1762394 TTCGAAAATTTGCACATTGAGTGAACGAGCCTCCGGGCTCTCAAACGGCATACGCAGGAG 1762335 Query 62560 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62619 ||| || | || || || ||||| || || || ||||| |||| |||||| ||| || Sbjct 1762334 AATGAAAGTATCGGCCAAACCTTGCACCCCTATTCCGATCGGTCGGTGTCTCAAATTCGA 1762275 Query 62620 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 62679 || ||| || || | || || | | | ||||| || ||||||||| || Sbjct 1762274 CGTTCGAGCCTCAGGGCTCGGGTACGCACTTACGTCTATCGCCTTGTTGAGATTTTTGGT 1762215 Query 62680 AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATCG--CCCATCT--ATT-AC 62733 | |||||||| | |||| || ||||| || || || || ||| || Sbjct 1762214 TAAGGTCTTGACCACTTGTTTCAACTTTTCGAAATCGTAACCGTTCCGTTCCGGATTCAC 1762155 Query 62734 AAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATA 62793 |||||||| | |||||| || ||| | ||||| |||| | || | || | || Sbjct 1762154 GAACATGTTTAGTGCAACTGAGGCCGTAATACAAGCGGCAATTTCGTCAGAAGAGCTGTA 1762095 Query 62794 TTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 62853 ||| ||| || |||| | | | |||| ||||| || ||||||||||| || || || Sbjct 1762094 TTGAATTGATTCGGTGCTCAAACTGCTACTTTTGATCGTCCCTAAATTTTGCTGGTTGCT 1762035 Query 62854 CTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 62913 ||||| || || |||||||| || | ||| | || | || ||||| ||||| || | Sbjct 1762034 TTTTTTATTGCAAGCATCCTTGTACAAAATATAGGGCGAGCCTGTTTCCATCTGTGAGAC 1761975 Query 62914 TATAATCGCTTTCCAGACGACTCGAGCC 62941 ||||| ||||||| | || ||| Sbjct 1761974 GCAGATCGCGCGCCAGACGTCCCGTGCC 1761947 >seq5 Length=15459558 Score = 277 bits (306), Expect = 2e-69 Identities = 629/939 (67%), Gaps = 14/939 (1%) Strand=Plus/Minus Query 32313 CTTTAAAAGTCAACATCTAGAGAAAAATGATTGTCTTCTTGAGACATAACTCCCATTTTT 32372 ||||||||||| | ||||||| | | | | || | | || | ||||| | || Sbjct 2625117 CTTTAAAAGTCCAAATCTAGATGGTACTCCTCGGTTTGCTCACACGTGACTCCGCTCTTC 2625058 Query 32373 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCC 32432 |||||||| ||||| || || || ||||| || || ||||| || ||| | | Sbjct 2625057 TGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTGGAAATAATCGTC 2624998 Query 32433 ATGAAATCGAATGGATTG-GTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 32491 ||||||||||| ||||| || | || || ||||| | | ||||| || | ||| Sbjct 2624997 ATGAAATCGAACGGATTCTGTGAG-TTGTAGATTTTCTCGCACCCCAACTCGCCCAACAA 2624939 Query 32492 TCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 32551 ||| || || |||||||| || ||| ||||| | || |||||||| || | | Sbjct 2624938 TCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATTCCAATCATGCT 2624879 Query 32552 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 32611 ||||| | ||| |||| | ||||| | || || |||||||||| ||||| | Sbjct 2624878 GACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCTTGGATAAT-GC 2624820 Query 32612 TCTTACTGT-TTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 32670 | | | | ||||| ||| | || || || ||||||||||| || |||| Sbjct 2624819 TTTGAATCCGTTCTTTGGACGGCTTCTGCACCAAGTGAGAGAACATCAAACAGGCAAAAT 2624760 Query 32671 CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 32730 |||| ||||| |||||||| || ||| | ||| |||||||| ||||| || ||||| | Sbjct 2624759 CGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGGCATAA 2624700 Query 32731 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTA 32790 | |||||||||||||| || || || ||||| ||||| |||||||| ||||| | Sbjct 2624699 GATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAATCCCTTCGA 2624640 Query 32791 CTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-----TATCCACTT 32845 | || ||||| || | | || || ||| || | ||| || || ||||||| Sbjct 2624639 CGGCGGCAAACGCCACGATTCGTTCGCCAAAA--GTCGCGTTCTTGCTGTTTATCCACAG 2624582 Query 32846 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905 ||||| ||||||||||| || ||||| |||| ||||| || ||||| || | | Sbjct 2624581 CAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGAACAAGAA 2624522 Query 32906 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 32965 | || || | || || || || || ||||| | || ||||| |||||||| Sbjct 2624521 CTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTGTACATCTCCGAATG 2624462 Query 32966 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTC 33025 ||||||||||| || ||||| || ||||| ||||| | ||| ||||| | || || || Sbjct 2624461 GATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCGGTCACTTGCACCTC 2624402 Query 33026 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33085 | || | || | | ||||| || || ||||||||| |||||| ||||| || Sbjct 2624401 CTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAGGCTGCGAAAAATGC 2624342 Query 33086 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCCAATCATTGAT 33142 | || || || || || ||| || | | ||| || ||||| || | | Sbjct 2624341 AAGAACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTTGTTCTTCCAGTCGTCCAA 2624282 Query 33143 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33202 |||||| || | ||| |||||||| |||||||| || || || || | || || | Sbjct 2624281 ATCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTCCGCTTGCTTGTATTT 2624222 Query 33203 ATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 | ||| ||||| | || || || ||||| | ||||| Sbjct 2624221 GTCCCAAATGTCGGGGTACTGGATGGGAAAGACCACAAA 2624183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633615509727200