Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq7 138 1e-27 seq2 113 4e-20 >seq7 Length=16482863 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || |||||||||||||| || || | ||||| | ||||| || | || Sbjct 10793386 ATGCAAATCTTCGTAAAGACTTTGACTGGGAAGACGATCACTTTGGAAGTAGAACCATCG 10793327 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| | ||| | |||| ||| |||||||| |||||||| || || || Sbjct 10793326 GACACTATCGAAAACGTTAAGGCGAAAATTCAG-GACAAAGAGGGGATTCCCCCAGATCA 10793268 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || ||||||||||| | ||||||| || ||| | ||| ||||| Sbjct 10793267 GCAGAGGTTGATCTTCGCCGGCAAACAGCTCGAAGATGGCCGAACTCTCTCCGACTACAA 10793208 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||||||| || || || ||||| | |||| |||| || Sbjct 10793207 CATTCAAAAAGAATCAACACTCCACTTAGTATTGCGGCTCCGAGGTGG 10793160 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||| || || | ||||| | ||||| || | || Sbjct 10792930 ATGCAAATTTTCGTGAAGACCTTGACGGGAAAGACGATCACTTTGGAAGTAGAACCCTCA 10792871 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || |||| |||| || || |||||||| ||||| || || Sbjct 10792870 GACACAATTGAG--AATGTTAAAGCTAAAATCCAG-GATAAAGAAGGCATTCCTCCAGAT 10792814 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||| ||||||||| | ||||||| ||||| || || || Sbjct 10792813 CAGCAGAGGTTGATCTTTGCTGGCAAACAACTCGAAGATGGGCGCACCCTGTCGGACTAT 10792754 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||||||||| || ||||||||||| | | || ||||||| Sbjct 10792753 AATATTCAAAAAGAATCAACCCTACATTTAGTATTGCGTCTGCGAGGAGG 10792704 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || ||| | ||||| | ||||| || | || Sbjct 10793614 ATGCAAATTTTCGTGAAGACTTTGACTGGAAAAACGATCACTCTTGAAGTCGAACCTTCG 10793555 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| | |||| ||| |||||||| |||||||| || || || Sbjct 10793554 GACACAATCGAAAACGTGAAGGCGAAAATTCAG-GACAAAGAGGGGATTCCCCCAGATCA 10793496 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || | | ||||| ||||||||||| || || |||| |||||| | ||| ||||| Sbjct 10793495 GCAAAGATTGATTTTCGCCGGCAAACAGTTGGAGGATGGTCGCACACTCTCCGACTACAA 10793436 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208 || || ||||| || || || || || ||| Sbjct 10793435 CATCCAGAAAGAGTCGACCCTCCACTTGGTG 10793405 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| |||| || ||| ||||||| | ||||| || | ||| Sbjct 10793158 ATGCAAATTTTCGTTAAAACTCTGACTGGCAAAACCATCACCCTGGAAGTCGAACCTTCT 10793099 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| | ||| | || | ||| |||||||| || || ||||| ||||| Sbjct 10793098 GATACAATTGAGAACGTCAAGGCTAAGATTCAA-GACAAAGAGGGTATCCCACCAGACCA 10793040 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || ||||| || |||||| ||||||| | || ||| | ||||||||| Sbjct 10793039 ACAAAGATTGATCTTTGCTGGAAAACAACTAGAAGACGGCCGTACTCTTTCCGATTACAA 10792980 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208 ||| || || |||||||| || || || ||| Sbjct 10792979 TATCCAGAAGGAATCCACTCTCCACTTGGTG 10792949 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| |||||| ||||||| | || || ||| | || Sbjct 10794526 ATGCAGATCTTCGTGAAGACTTTGACTGGTAAAACCATCACCTTGGAGGTCGAGCCCTCC 10794467 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||||| |||| |||| || ||| ||||| ||||| || || || || Sbjct 10794466 GATACCATCGAAAACGTCA---AAGC-TAAGATCCAGGACAAGGAAGGTATCCCCCCAGA 10794411 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || || | || || || ||||||||| | ||||| | |||||| || || || Sbjct 10794410 CCAGCAACGTTTGATCTTCGCTGGCAAACAACTCGAAGACGGACGCACTTTGTCTGACTA 10794351 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||| || || || ||||| ||||| || || || Sbjct 10794350 CAACATCCAGAAGGAATCGACGCTCCACTTGGT 10794318 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || |||| || || ||||||| | || || || | ||| Sbjct 10793842 ATGCAAATTTTCGTCAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAACCTTCT 10793783 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| | ||| || ||| ||||| ||||| || ||||| |||||| Sbjct 10793782 GATACCATTGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAA 10793723 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || || || || |||||| | ||||| | || ||| | ||| |||||| Sbjct 10793722 CAAAGATTGATCTTCGCTGGAAAACAACTTGAAGACGGCCGTACTCTTTCCGACTACAAT 10793663 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTG 25208 || |||||||||||||| || || || ||| Sbjct 10793662 ATCCAAAAAGAATCCACCCTCCACTTGGTG 10793633 >seq2 Length=15265516 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || || || || || |||| || || ||||||| | || || ||| || Sbjct 12970122 ACAATGCAGATTTTCGTTAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCG 12970181 Query 25056 TCTGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||||||||| |||| || || | ||| || ||||| |||||||| || || Sbjct 12970182 TCAGATACTATCGAGAATGTGAAAGCTAAGATTCAG-GATAAAGAGGGGATTCCCCCGGA 12970240 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || | || || ||||| ||||| | || |||| || || | |||||| Sbjct 12970241 TCAGCAACGTCTCATCTTCGCCGGGAAACAGCTCGAGGATGGACGTACCCTCTCCGATTA 12970300 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || || |||||||| || || |||| |||| || ||||| || Sbjct 12970301 CAATATCCAGAAGGAATCCACCCTTCACCTAGTTTTAAGACTCAGAGGTGG 12970351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433317004572830