Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq7 138 1e-27
seq2 113 4e-20
>seq7
Length=16482863
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || |||||||||||||| || || | ||||| | ||||| || | ||
Sbjct 10793386 ATGCAAATCTTCGTAAAGACTTTGACTGGGAAGACGATCACTTTGGAAGTAGAACCATCG 10793327
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||||||||| | ||| | |||| ||| |||||||| |||||||| || || ||
Sbjct 10793326 GACACTATCGAAAACGTTAAGGCGAAAATTCAG-GACAAAGAGGGGATTCCCCCAGATCA 10793268
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | || || ||||||||||| | ||||||| || ||| | ||| |||||
Sbjct 10793267 GCAGAGGTTGATCTTCGCCGGCAAACAGCTCGAAGATGGCCGAACTCTCTCCGACTACAA 10793208
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||||||||||| || || || ||||| | |||| |||| ||
Sbjct 10793207 CATTCAAAAAGAATCAACACTCCACTTAGTATTGCGGCTCCGAGGTGG 10793160
Score = 132 bits (146), Expect = 4e-26
Identities = 169/230 (73%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| ||||| || || | ||||| | ||||| || | ||
Sbjct 10792930 ATGCAAATTTTCGTGAAGACCTTGACGGGAAAGACGATCACTTTGGAAGTAGAACCCTCA 10792871
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || ||| | || |||| |||| || || |||||||| ||||| || ||
Sbjct 10792870 GACACAATTGAG--AATGTTAAAGCTAAAATCCAG-GATAAAGAAGGCATTCCTCCAGAT 10792814
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||| || | || ||||| ||||||||| | ||||||| ||||| || || ||
Sbjct 10792813 CAGCAGAGGTTGATCTTTGCTGGCAAACAACTCGAAGATGGGCGCACCCTGTCGGACTAT 10792754
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||||||||||||||||| || ||||||||||| | | || |||||||
Sbjct 10792753 AATATTCAAAAAGAATCAACCCTACATTTAGTATTGCGTCTGCGAGGAGG 10792704
Score = 122 bits (134), Expect = 8e-23
Identities = 155/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||||||||| || ||| | ||||| | ||||| || | ||
Sbjct 10793614 ATGCAAATTTTCGTGAAGACTTTGACTGGAAAAACGATCACTCTTGAAGTCGAACCTTCG 10793555
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| ||||| ||||| | |||| ||| |||||||| |||||||| || || ||
Sbjct 10793554 GACACAATCGAAAACGTGAAGGCGAAAATTCAG-GACAAAGAGGGGATTCCCCCAGATCA 10793496
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| | | ||||| ||||||||||| || || |||| |||||| | ||| |||||
Sbjct 10793495 GCAAAGATTGATTTTCGCCGGCAAACAGTTGGAGGATGGTCGCACACTCTCCGACTACAA 10793436
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208
|| || ||||| || || || || || |||
Sbjct 10793435 CATCCAGAAAGAGTCGACCCTCCACTTGGTG 10793405
Score = 116 bits (128), Expect = 3e-21
Identities = 154/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || || ||| |||| || ||| ||||||| | ||||| || | |||
Sbjct 10793158 ATGCAAATTTTCGTTAAAACTCTGACTGGCAAAACCATCACCCTGGAAGTCGAACCTTCT 10793099
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || ||| | ||| | || | ||| |||||||| || || ||||| |||||
Sbjct 10793098 GATACAATTGAGAACGTCAAGGCTAAGATTCAA-GACAAAGAGGGTATCCCACCAGACCA 10793040
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| | | || ||||| || |||||| ||||||| | || ||| | |||||||||
Sbjct 10793039 ACAAAGATTGATCTTTGCTGGAAAACAACTAGAAGACGGCCGTACTCTTTCCGATTACAA 10792980
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208
||| || || |||||||| || || || |||
Sbjct 10792979 TATCCAGAAGGAATCCACTCTCCACTTGGTG 10792949
Score = 107 bits (118), Expect = 2e-18
Identities = 153/213 (72%), Gaps = 8/213 (4%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||||||||| |||||| ||||||| | || || ||| | ||
Sbjct 10794526 ATGCAGATCTTCGTGAAGACTTTGACTGGTAAAACCATCACCTTGGAGGTCGAGCCCTCC 10794467
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || ||||| |||| |||| || ||| ||||| ||||| || || || ||
Sbjct 10794466 GATACCATCGAAAACGTCA---AAGC-TAAGATCCAGGACAAGGAAGGTATCCCCCCAGA 10794411
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| || || | || || || ||||||||| | ||||| | |||||| || || ||
Sbjct 10794410 CCAGCAACGTTTGATCTTCGCTGGCAAACAACTCGAAGACGGACGCACTTTGTCTGACTA 10794351
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207
||| || || || ||||| ||||| || || ||
Sbjct 10794350 CAACATCCAGAAGGAATCGACGCTCCACTTGGT 10794318
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || || || |||| || || ||||||| | || || || | |||
Sbjct 10793842 ATGCAAATTTTCGTCAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAACCTTCT 10793783
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| || || ||| | ||| || ||| ||||| ||||| || ||||| ||||||
Sbjct 10793782 GATACCATTGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAA 10793723
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|| | | || || || || |||||| | ||||| | || ||| | ||| ||||||
Sbjct 10793722 CAAAGATTGATCTTCGCTGGAAAACAACTTGAAGACGGCCGTACTCTTTCCGACTACAAT 10793663
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTG 25208
|| |||||||||||||| || || || |||
Sbjct 10793662 ATCCAAAAAGAATCCACCCTCCACTTGGTG 10793633
>seq2
Length=15265516
Score = 113 bits (124), Expect = 4e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|||||||| || || || || || |||| || || ||||||| | || || ||| ||
Sbjct 12970122 ACAATGCAGATTTTCGTTAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCG 12970181
Query 25056 TCTGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || ||||||||| |||| || || | ||| || ||||| |||||||| || ||
Sbjct 12970182 TCAGATACTATCGAGAATGTGAAAGCTAAGATTCAG-GATAAAGAGGGGATTCCCCCGGA 12970240
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| || || | || || ||||| ||||| | || |||| || || | ||||||
Sbjct 12970241 TCAGCAACGTCTCATCTTCGCCGGGAAACAGCTCGAGGATGGACGTACCCTCTCCGATTA 12970300
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||| || || |||||||| || || |||| |||| || ||||| ||
Sbjct 12970301 CAATATCCAGAAGGAATCCACCCTTCACCTAGTTTTAAGACTCAGAGGTGG 12970351
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433317004572830
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |