Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq5 345 5e-90
seq6 122 1e-22
seq38 114 1e-20
>seq5
Length=15459558
Score = 345 bits (382), Expect = 5e-90
Identities = 639/929 (69%), Gaps = 15/929 (2%)
Strand=Plus/Minus
Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862
|| ||||||||||| ||||| || ||||||||||| ||||| ||||| || || ||
Sbjct 2625060 TTCTGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTGGAAAT--AA 2625003
Query 92863 T--TCACTAGT--GATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACA 92918
| ||| | || ||||||| | ||| || || || | ||||||| ||
Sbjct 2625002 TCGTCATGAAATCGAACGGATTCTGTGAGTTGTAGATTTTCTCGCACCCCAACTCGCCCA 2624943
Query 92919 ATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAA 92978
| ||||| || || |||||||| ||||| || |||||||| | || |||||||| | |
Sbjct 2624942 ACAATCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATTCCAATCA 2624883
Query 92979 GACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGA 93038
| || |||| ||| || |||||||| || ||||||||| || || |||| | |
Sbjct 2624882 TGCTGACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCTTGGATAA 2624823
Query 93039 TTTCTATTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097
| || | | || | ||||| || || || || | | | | |||| || || |||
Sbjct 2624822 TG-CTTTGAATCCGTTCTTTGGACGGCTTCTGCACCAAGTGAGAGAACATCAAACAGGCA 2624764
Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG- 93156
|| ||| ||||| || ||||| | || |||| |||||| ||||| | ||||||
Sbjct 2624763 AAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGGC 2624704
Query 93157 -TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215
||| | ||| | ||| | ||||| || || |||||||| || ||||| || || || |
Sbjct 2624703 ATAAGATTCCGCTTTT--TAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAATCC 2624646
Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275
|||| ||||| ||||| ||||| || |||||| ||||| | ||| || ||| | ||||
Sbjct 2624645 CTTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTGCTGTTTATCC 2624586
Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335
| || ||||| ||||| || ||||||| ||| || || || ||||| || || || |
Sbjct 2624585 ACAGCAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGAACA 2624526
Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395
| | || ||| | | || ||||| || ||||| |||| ||||| || |
Sbjct 2624525 AGAACTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTGTACATCTCCG 2624466
Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455
|||||| || || || || |||||||| ||||| || || | |||||| || | ||||
Sbjct 2624465 AATGGATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCGGTCACTTGCA 2624406
Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515
| || || || ||||| ||||| ||||| ||||| || || || || ||||| ||||
Sbjct 2624405 CCTCCTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAGGCTGCGAAAA 2624346
Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCC---CAATCGG 93572
| || | | ||| || || | |||||| || || || | | || |||
Sbjct 2624345 ATGCAAGAACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTTGTTCTTCCAGTCGT 2624286
Query 93573 ATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGT 93632
| |||||| || | ||| ||||||||| ||||||||||| ||||| |||| ||||
Sbjct 2624285 CCAAATCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTCCGCTTGCTTGT 2624226
Query 93633 ACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTT 93692
| | ||||| ||||| | || || || ||||| | ||||| || ||||| || |
Sbjct 2624225 ATTTGTCCCAAATGTCGGGGTACTGGATGGGAAAGACCACAAACCGGCGCGGGTTTTCCT 2624166
Query 93693 TTAGTAACGGCTCTAGTTGTGGGTCAAAC 93721
|| | ||||| | || ||||| |||
Sbjct 2624165 GCAGAAGGGGCTCCAATTCGGGGTCGAAC 2624137
>seq6
Length=10086398
Score = 122 bits (134), Expect = 1e-22
Identities = 81/89 (91%), Gaps = 2/89 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|||||||||||||||| |||||||||||||||||||||| |||||||| | | ||||
Sbjct 9645243 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGAGAGC 9645302
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT 126351
|||||||||||||||||||||||||||||
Sbjct 9645303 GTGGGTTCGAACCCCACACCTGACAAATT 9645331
>seq38
Length=885624
Score = 114 bits (126), Expect = 1e-20
Identities = 77/85 (91%), Gaps = 2/85 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|||||||||||||||| |||||||||||||||||||||| |||||||| | | ||||
Sbjct 536203 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGAGAGC 536144
Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347
|||||||||||||||||||||||||
Sbjct 536143 GTGGGTTCGAACCCCACACCTGACA 536119
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556846307697680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |