Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5 345 5e-90 seq6 122 1e-22 seq38 114 1e-20 >seq5 Length=15459558 Score = 345 bits (382), Expect = 5e-90 Identities = 639/929 (69%), Gaps = 15/929 (2%) Strand=Plus/Minus Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 || ||||||||||| ||||| || ||||||||||| ||||| ||||| || || || Sbjct 2625060 TTCTGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTGGAAAT--AA 2625003 Query 92863 T--TCACTAGT--GATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACA 92918 | ||| | || ||||||| | ||| || || || | ||||||| || Sbjct 2625002 TCGTCATGAAATCGAACGGATTCTGTGAGTTGTAGATTTTCTCGCACCCCAACTCGCCCA 2624943 Query 92919 ATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAA 92978 | ||||| || || |||||||| ||||| || |||||||| | || |||||||| | | Sbjct 2624942 ACAATCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATTCCAATCA 2624883 Query 92979 GACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGA 93038 | || |||| ||| || |||||||| || ||||||||| || || |||| | | Sbjct 2624882 TGCTGACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCTTGGATAA 2624823 Query 93039 TTTCTATTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 | || | | || | ||||| || || || || | | | | |||| || || ||| Sbjct 2624822 TG-CTTTGAATCCGTTCTTTGGACGGCTTCTGCACCAAGTGAGAGAACATCAAACAGGCA 2624764 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG- 93156 || ||| ||||| || ||||| | || |||| |||||| ||||| | |||||| Sbjct 2624763 AAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGGC 2624704 Query 93157 -TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 ||| | ||| | ||| | ||||| || || |||||||| || ||||| || || || | Sbjct 2624703 ATAAGATTCCGCTTTT--TAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAATCC 2624646 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275 |||| ||||| ||||| ||||| || |||||| ||||| | ||| || ||| | |||| Sbjct 2624645 CTTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTGCTGTTTATCC 2624586 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 | || ||||| ||||| || ||||||| ||| || || || ||||| || || || | Sbjct 2624585 ACAGCAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGAACA 2624526 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 | | || ||| | | || ||||| || ||||| |||| ||||| || | Sbjct 2624525 AGAACTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTGTACATCTCCG 2624466 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 |||||| || || || || |||||||| ||||| || || | |||||| || | |||| Sbjct 2624465 AATGGATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCGGTCACTTGCA 2624406 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 | || || || ||||| ||||| ||||| ||||| || || || || ||||| |||| Sbjct 2624405 CCTCCTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAGGCTGCGAAAA 2624346 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCC---CAATCGG 93572 | || | | ||| || || | |||||| || || || | | || ||| Sbjct 2624345 ATGCAAGAACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTTGTTCTTCCAGTCGT 2624286 Query 93573 ATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGT 93632 | |||||| || | ||| ||||||||| ||||||||||| ||||| |||| |||| Sbjct 2624285 CCAAATCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTCCGCTTGCTTGT 2624226 Query 93633 ACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTT 93692 | | ||||| ||||| | || || || ||||| | ||||| || ||||| || | Sbjct 2624225 ATTTGTCCCAAATGTCGGGGTACTGGATGGGAAAGACCACAAACCGGCGCGGGTTTTCCT 2624166 Query 93693 TTAGTAACGGCTCTAGTTGTGGGTCAAAC 93721 || | ||||| | || ||||| ||| Sbjct 2624165 GCAGAAGGGGCTCCAATTCGGGGTCGAAC 2624137 >seq6 Length=10086398 Score = 122 bits (134), Expect = 1e-22 Identities = 81/89 (91%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 9645243 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGAGAGC 9645302 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||||||||||||||||||||||||| Sbjct 9645303 GTGGGTTCGAACCCCACACCTGACAAATT 9645331 >seq38 Length=885624 Score = 114 bits (126), Expect = 1e-20 Identities = 77/85 (91%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 536203 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGAGAGC 536144 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 536143 GTGGGTTCGAACCCCACACCTGACA 536119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556846307697680