Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4 181 9e-41 seq7 149 5e-31 seq2 134 1e-26 >seq4 Length=12290766 Score = 181 bits (200), Expect = 9e-41 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||||||||| || |||||| | ||||| || || |||||||||| || || | | Sbjct 489166 GATGCAAATTTTCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAGCCTTC 489107 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || ||||| |||||||| |||||||| || ||||| |||||||| Sbjct 489106 AGACACCATCGAAAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCCGATCA 489047 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| ||| | || ||||| || |||||| | |||||| ||||| | ||||||||||| Sbjct 489046 ACAGCGTTTGATTTTTGCGGGTAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAA 488987 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| || || ||||||||| | |||||||||||||| |||| || || Sbjct 488986 CATCCAGAAGGAATCCACCCTTCATTTAGTTTTGCGTCTGCGAGGTGG 488939 >seq7 Length=16482863 Score = 149 bits (164), Expect = 5e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||||| || || |||||| ||||||||||||| ||| | | Sbjct 10793614 ATGCAAATTTTCGTGAAGACTTTGACTGGAAAAACGATCACTCTTGAAGTCGAACCTTCG 10793555 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || |||||||| ||||| ||||| ||||| || ||||| Sbjct 10793554 GACACAATCGAAAACGTGAAGGCGAAAATTCAGGACAAAGAGGGGATTCCCCCAGATCAG 10793495 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || |||||||||||||| |||||| ||||| ||||||| |||||| Sbjct 10793494 CAAAGATTGATTTTCGCCGGCAAACAGTTGGAGGATGGTCGCACACTCTCCGACTACAAC 10793435 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || ||||| || ||| | || || || ||||| Sbjct 10793434 ATCCAGAAAGAGTCGACCCTCCACTTGGTGTTGCG 10793400 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || || || || || ||| ||||| | ||||| ||| || | Sbjct 10792930 ATGCAAATTTTCGTGAAGACCTTGACGGGAAAGACGATCACTTTGGAAGTAGAACCCTCA 10792871 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||||| || || || || || ||||| || ||||| Sbjct 10792870 GACACAATTGAGAATGTTAAAGCTAAAATCCAGGATAAAGAAGGCATTCCTCCAGATCAG 10792811 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| |||||||| | || ||| |||||| | || || || || Sbjct 10792810 CAGAGGTTGATCTTTGCTGGCAAACAACTCGAAGATGGGCGCACCCTGTCGGACTATAAT 10792751 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||||||| ||| |||||||||| ||||| |||| |||||| Sbjct 10792750 ATTCAAAAAGAATCAACCCTACATTTAGTATTGCGTCTGCGAGGAGGT 10792703 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||||||| | || || ||||| |||| || ||||| ||| | | Sbjct 10793158 ATGCAAATTTTCGTTAAAACTCTGACTGGCAAAACCATCACCCTGGAAGTCGAACCTTCT 10793099 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| || ||||||||||| |||||||| ||||| || ||| Sbjct 10793098 GATACAATTGAGAACGTCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCAGACCAA 10793039 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || ||||| |||| || ||| || | ||||||||||| Sbjct 10793038 CAAAGATTGATCTTTGCTGGAAAACAACTAGAAGACGGCCGTACTCTTTCCGATTACAAT 10792979 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || |||||||| | || || || ||||| Sbjct 10792978 ATCCAGAAGGAATCCACTCTCCACTTGGTGTTGCG 10792944 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||||| || || || ||| ||||| | ||||| ||| | | Sbjct 10793386 ATGCAAATCTTCGTAAAGACTTTGACTGGGAAGACGATCACTTTGGAAGTAGAACCATCG 10793327 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || |||||||| ||||| ||||| ||||| || ||||| Sbjct 10793326 GACACTATCGAAAACGTTAAGGCGAAAATTCAGGACAAAGAGGGGATTCCCCCAGATCAG 10793267 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || |||||||||||| | || ||| ||| || ||||||| |||||| Sbjct 10793266 CAGAGGTTGATCTTCGCCGGCAAACAGCTCGAAGATGGCCGAACTCTCTCCGACTACAAC 10793207 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 |||||||||||||| || | || ||||| ||||| Sbjct 10793206 ATTCAAAAAGAATCAACACTCCACTTAGTATTGCG 10793172 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || ||||| || | || || || || ||||||| ||||| || || | Sbjct 10794298 ATGCAAATCTTCGTTAAGACACTCACTGGCAAGACCATCACTCTGGAAGTTGAGCCCTCT 10794239 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | ||||| || || || ||||||||||| || || || |||||| Sbjct 10794238 GATACGATCGAGAACGTCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGATCAA 10794179 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || ||||| | || || |||||| | |||||||||||| Sbjct 10794178 CAGCGTTTGATTTTCGCTGGTAAACAACTCGAAGACGGACGCACCTTGTCCGATTACAAC 10794119 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||||||| | || || |||||||| || | ||||| Sbjct 10794118 ATCCAGAAGGAATCCACCCTTCACTTGGTTTTGCGTCTGAGGGGAGG 10794072 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || ||||| | ||| | ||||| ||| | || Sbjct 10794070 ATGCAGATCTTCGTCAAGACCTTGACTGGGAAAACCATTACTTTGGAAGTCGAACCTTCC 10794011 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || ||||| || ||||| || || ||||| || ||| Sbjct 10794010 GACACGATTGAAAACGTCAAGGCTAAGATTCAGGATAAGGAAGGGATCCCACCAGACCAA 10793951 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || |||||||| ||||| |||| ||| || ||| |||| ||||||||| Sbjct 10793950 CAAAGATTGATCTTTGCCGGGAAACAACTAGAAGATGGGCGTACCCTCTCAGATTACAAC 10793891 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||||||| | || || || ||||| ||| | || || Sbjct 10793890 ATCCAGAAGGAATCCACCCTTCACTTGGTATTGCGTTTGAGAGGTGG 10793844 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || || || || ||||| | || | ||||| || | | Sbjct 10792702 ATGCAAATTTTCGTGAAGACGTTGACTGGGAAAACAATTACGTTGGAAGTTGAGCCATCG 10792643 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || ||||||||||| ||||| |||||||| || || || Sbjct 10792642 GACACGATTGAAAATGTGAAGGCCAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCAG 10792583 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || |||||||| || ||| ||||| | || || ||||| Sbjct 10792582 CAAAGATTGATCTTTGCGGGAAAACAGTTGGAAGATGGTCGCACACTTTCGGACTACAAT 10792523 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| |||||||| | ||| |||| || || | |||||||| Sbjct 10792522 ATCCAAAAGGAATCCACTCTTCATCTAGTCTTACGTCTTCGCGGAGG 10792476 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | || || || || |||| | || || ||| | | Sbjct 10793842 ATGCAAATTTTCGTCAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAACCTTCT 10793783 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || || ||||||||||| ||||| ||||| || ||| Sbjct 10793782 GATACCATTGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAA 10793723 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || || || ||||| | || || ||| || | ||||| ||||| Sbjct 10793722 CAAAGATTGATCTTCGCTGGAAAACAACTTGAAGACGGCCGTACTCTTTCCGACTACAAT 10793663 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || ||||||||||||||| | || || || ||||| Sbjct 10793662 ATCCAAAAAGAATCCACCCTCCACTTGGTGTTGCG 10793628 >seq2 Length=15265516 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| |||||||| | || || || || |||| ||||| || || | | Sbjct 12970125 ATGCAGATTTTCGTTAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCGTCA 12970184 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| || ||||| || || ||||| ||||| || ||||| Sbjct 12970185 GATACTATCGAGAATGTGAAAGCTAAGATTCAGGATAAAGAGGGGATTCCCCCGGATCAG 12970244 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || ||||| |||||| | |||||| || ||| ||||||||||||| Sbjct 12970245 CAACGTCTCATCTTCGCCGGGAAACAGCTCGAGGATGGACGTACCCTCTCCGATTACAAT 12970304 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTT 22430 || || || ||||||||| | || ||||||| Sbjct 12970305 ATCCAGAAGGAATCCACCCTTCACCTAGTTTT 12970336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419717349664330