Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq7 208 1e-48 seq3 168 1e-36 seq2 147 4e-30 seq4 140 6e-28 >seq7 Length=16482863 Score = 208 bits (230), Expect = 1e-48 Identities = 175/215 (81%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||||||||||||| || ||||| || || |||||||| ||||| ||||| || | |||| Sbjct 10793856 CGCAATACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGCCCA 10793915 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||||| || |||||||| || || | |||||||||||| ||||| || |||||||| Sbjct 10793916 TCTTCTAGTTGTTTCCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATCCCTTCCTTA 10793975 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || |||||||| ||||||||| || || ||||| | | ||| |||||||| || ||| Sbjct 10793976 TCCTGAATCTTAGCCTTGACGTTTTCAATCGTGTCGGAAGGTTCGACTTCCAAAGTAATG 10794035 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || | |||||||||||| |||||||| Sbjct 10794036 GTTTTCCCAGTCAAGGTCTTGACGAAGATCTGCAT 10794070 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| |||||||| || ||||| ||||||||||| || || ||||| Sbjct 10793616 CCACCTCGGAGACGCAACACCAAGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCGGAA 10793675 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | || || || ||||| || | |||||||||||| ||||| Sbjct 10793676 AGAGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGTGGG 10793735 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||| ||||| ||||| || ||| ||||| || | | ||| || Sbjct 10793736 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTATCAGAAGGTTCGACC 10793795 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || || || ||||| |||||||| || ||||| Sbjct 10793796 TCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTGACGAAAATTTGCAT 10793842 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| |||||||| || ||||| || || ||||| || |||||||| Sbjct 10792932 CCACCTCGGAGACGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAA 10792991 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||||| || || || || || || | |||||||||||| ||||| Sbjct 10792992 AGAGTACGGCCGTCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTGGG 10793051 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || |||||||||||||| ||||||||| ||| || || || | | ||| ||| Sbjct 10793052 ATACCCTCTTTGTCTTGAATCTTAGCCTTGACGTTCTCAATTGTATCAGAAGGTTCGACT 10793111 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||||||| || || || || || ||||| || ||||| Sbjct 10793112 TCCAGGGTGATGGTTTTGCCAGTCAGAGTTTTAACGAAAATTTGCAT 10793158 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| |||||||| || || |||||||| |||||||| || |||||| Sbjct 10793388 CCACCACGGAGACGCAACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAG 10793447 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | ||||| || ||||| || |||||||| || | |||||| || || || ||| Sbjct 10793448 AGTGTGCGACCATCCTCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGA 10793507 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || ||||| ||||| || ||||| ||| ||||| ||||| | | ||| ||| Sbjct 10793508 ATCCCCTCTTTGTCCTGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACT 10793567 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| |||||||| || | ||||| ||||| || ||||| Sbjct 10793568 TCAAGAGTGATCGTTTTTCCAGTCAAAGTCTTCACGAAAATTTGCAT 10793614 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||||||| ||||| || || || |||||||| ||||| || |||||| Sbjct 10793160 CCACCTCGGAGCCGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAG 10793219 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||| || |||||||| || | || || || || || ||| Sbjct 10793220 AGAGTTCGGCCATCTTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGGA 10793279 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || ||||| ||||| || ||||| ||| ||||| ||||| | || ||||||| Sbjct 10793280 ATCCCCTCTTTGTCCTGAATTTTCGCCTTAACGTTTTCGATAGTGTCCGATGGTTCTACT 10793339 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || || || || | ||||| ||||| || ||||| Sbjct 10793340 TCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCAT 10793386 Score = 161 bits (178), Expect = 2e-34 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 ||| | |||||||||||| || || || | || || ||||| || |||||||| || || Sbjct 10792469 TTACTGTCCTCCGCGAAGACGTAAGACTAGATGAAGAGTGGATTCCTTTTGGATATTGTA 10792528 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 || || ||||| | |||||||| ||||| || || || || || | |||||| ||||| Sbjct 10792529 GTCCGAAAGTGTGCGACCATCTTCCAACTGTTTTCCCGCAAAGATCAATCTTTGCTGGTC 10792588 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407 || ||||| |||||||| |||||||| || ||||| || || || ||||| | || Sbjct 10792589 TGGGGGAATACCTTCCTTATCTTGAATTTTGGCCTTCACATTTTCAATCGTGTCCGATGG 10792648 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||| || || ||||| || || | ||||| ||||| || ||||| Sbjct 10792649 CTCAACTTCCAACGTAATTGTTTTCCCAGTCAACGTCTTCACGAAAATTTGCAT 10792702 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || |||||||| || ||||| || || |||||||| || ||||| || || Sbjct 10792704 CCTCCTCGCAGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGAC 10792763 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | || || || || || || | || || || || || ||| Sbjct 10792764 AGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 10792823 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| || || || || || || || || ||| || ||||||| | ||||||| Sbjct 10792824 ATGCCTTCTTTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTACT 10792883 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || |||||||| | |||||| ||||| || ||||| Sbjct 10792884 TCCAAAGTGATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCAT 10792930 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| |||||||| ||||| || || || |||||||| || || || | || | || || Sbjct 10794314 CAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGACAAAGTGCGTCCGTC 10794373 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| | || || || ||||| || | | ||| ||||| || || || ||||||||||| Sbjct 10794374 TTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTTGTC 10794433 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 || ||||| || |||||| |||||||| || | | || || |||||||||||||| Sbjct 10794434 CTGGATCTTAGCTTTGACGTTTTCGATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGT 10794493 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || || | ||||| ||||| |||||||| Sbjct 10794494 TTTACCAGTCAAAGTCTTCACGAAGATCTGCAT 10794526 >seq3 Length=31381287 Score = 168 bits (186), Expect = 1e-36 Identities = 212/290 (73%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 268209 CCCCAGTTGCAATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTT 268268 |||| | || || || ||||| || ||||| || ||| ||||| |||||| || | Sbjct 28596818 CCCCGGAAGCTATGACGAAGTCGTCCGGCTCGGGCTGCTGCAGCATGAGCCACATGGCCT 28596877 Query 268269 CGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGC 268328 | || |||||| ||||||||||| |||||||| | ||||| ||| || | |||| Sbjct 28596878 CCACGTAGTCCTTGGCATGGCCCCAGTCGCGCTTCGAGTCCAGGTTGCCTAATTCAAGGC 28596937 Query 268329 ATTTCTGCTTG---CCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGA 268385 | ||| || || || | | || | | || |||||||| || || |||| Sbjct 28596938 A---CTGAGTGAGCCCCAGGTGGATTTTGGCCACTTCTCGGGTGATTTTGCGCGTGACGA 28596994 Query 268386 ACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGC 268445 | || || |||||| | ||||| |||||||||||||||||||||||||| |||||||||| Sbjct 28596995 AGGTTTCACCACGTCGGGGGCTTTCGTGGTTGAAGAGGATGCCGTTGCAGGCGAACATGC 28597054 Query 268446 CATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCA 268495 | || || |||||||||||||| || ||||||| || | | ||||||| Sbjct 28597055 CGTAAGCTTCACGGTAGTTCACCACGATCCAGTAAGCGTAAAGCTTTGCA 28597104 >seq2 Length=15265516 Score = 147 bits (162), Expect = 4e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || | ||| || ||||| || || ||||| || ||||||||||| || | ||||| Sbjct 12970336 AAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGAGAGGGTACGTCCATCC 12970277 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 || | ||| ||||||||||| ||||| | ||| || || || ||||| || || || || Sbjct 12970276 TCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCCTCTTTATCC 12970217 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 |||||||| || || || |||||| || |||| | || || || | ||||||||| Sbjct 12970216 TGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCGACCTCAAGGGTGATGGTC 12970157 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || || ||||| || ||||| ||||||||| || Sbjct 12970156 TTGCCAGTCAGGGTTTTAACGAAAATCTGCATTGTG 12970121 >seq4 Length=12290766 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| || || || || ||||| || || |||||||| |||||||| Sbjct 488939 CCACCTCGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 488998 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | ||| || || || || || | | ||||| ||||| ||| Sbjct 488999 AAAGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGA 489058 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| ||||| || || ||||| ||||||||||||| | || || Sbjct 489059 ATGCCTTCCTTGTCCTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACC 489118 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || || || || || ||||| || ||||| Sbjct 489119 TCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921598414777040