Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq7 208 1e-48
seq3 168 1e-36
seq2 147 4e-30
seq4 140 6e-28
>seq7
Length=16482863
Score = 208 bits (230), Expect = 1e-48
Identities = 175/215 (81%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306
|||||||||||||| || ||||| || || |||||||| ||||| ||||| || | ||||
Sbjct 10793856 CGCAATACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGCCCA 10793915
Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366
||||||| || |||||||| || || | |||||||||||| ||||| || ||||||||
Sbjct 10793916 TCTTCTAGTTGTTTCCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATCCCTTCCTTA 10793975
Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426
|| |||||||| ||||||||| || || ||||| | | ||| |||||||| || |||
Sbjct 10793976 TCCTGAATCTTAGCCTTGACGTTTTCAATCGTGTCGGAAGGTTCGACTTCCAAAGTAATG 10794035
Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || | |||||||||||| ||||||||
Sbjct 10794036 GTTTTCCCAGTCAAGGTCTTGACGAAGATCTGCAT 10794070
Score = 185 bits (204), Expect = 2e-41
Identities = 177/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || ||||| |||||||| || ||||| ||||||||||| || || |||||
Sbjct 10793616 CCACCTCGGAGACGCAACACCAAGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCGGAA 10793675
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| | || || || ||||| || | |||||||||||| |||||
Sbjct 10793676 AGAGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGTGGG 10793735
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| |||||||||||||| ||||| ||||| || ||| ||||| || | | ||| ||
Sbjct 10793736 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTATCAGAAGGTTCGACC 10793795
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||||||||||| || || || ||||| |||||||| || |||||
Sbjct 10793796 TCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTGACGAAAATTTGCAT 10793842
Score = 176 bits (194), Expect = 8e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || ||||| |||||||| || ||||| || || ||||| || ||||||||
Sbjct 10792932 CCACCTCGGAGACGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAA 10792991
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||||| || || || || || || | |||||||||||| |||||
Sbjct 10792992 AGAGTACGGCCGTCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTGGG 10793051
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || || |||||||||||||| ||||||||| ||| || || || | | ||| |||
Sbjct 10793052 ATACCCTCTTTGTCTTGAATCTTAGCCTTGACGTTCTCAATTGTATCAGAAGGTTCGACT 10793111
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| |||||||||||| || || || || || ||||| || |||||
Sbjct 10793112 TCCAGGGTGATGGTTTTGCCAGTCAGAGTTTTAACGAAAATTTGCAT 10793158
Score = 176 bits (194), Expect = 8e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || ||||| |||||||| || || |||||||| |||||||| || ||||||
Sbjct 10793388 CCACCACGGAGACGCAACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAG 10793447
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
||||| | ||||| || ||||| || |||||||| || | |||||| || || || |||
Sbjct 10793448 AGTGTGCGACCATCCTCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGA 10793507
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || || ||||| ||||| || ||||| ||| ||||| ||||| | | ||| |||
Sbjct 10793508 ATCCCCTCTTTGTCCTGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACT 10793567
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||| |||||||| || | ||||| ||||| || |||||
Sbjct 10793568 TCAAGAGTGATCGTTTTTCCAGTCAAAGTCTTCACGAAAATTTGCAT 10793614
Score = 167 bits (184), Expect = 4e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || |||||||| ||||| || || || |||||||| ||||| || ||||||
Sbjct 10793160 CCACCTCGGAGCCGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAG 10793219
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | ||| || |||||||| || | || || || || || |||
Sbjct 10793220 AGAGTTCGGCCATCTTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGGA 10793279
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || || ||||| ||||| || ||||| ||| ||||| ||||| | || |||||||
Sbjct 10793280 ATCCCCTCTTTGTCCTGAATTTTCGCCTTAACGTTTTCGATAGTGTCCGATGGTTCTACT 10793339
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| ||||| || || || || | ||||| ||||| || |||||
Sbjct 10793340 TCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCAT 10793386
Score = 161 bits (178), Expect = 2e-34
Identities = 176/234 (75%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287
||| | |||||||||||| || || || | || || ||||| || |||||||| || ||
Sbjct 10792469 TTACTGTCCTCCGCGAAGACGTAAGACTAGATGAAGAGTGGATTCCTTTTGGATATTGTA 10792528
Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347
|| || ||||| | |||||||| ||||| || || || || || | |||||| |||||
Sbjct 10792529 GTCCGAAAGTGTGCGACCATCTTCCAACTGTTTTCCCGCAAAGATCAATCTTTGCTGGTC 10792588
Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407
|| ||||| |||||||| |||||||| || ||||| || || || ||||| | ||
Sbjct 10792589 TGGGGGAATACCTTCCTTATCTTGAATTTTGGCCTTCACATTTTCAATCGTGTCCGATGG 10792648
Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| |||||||| || || ||||| || || | ||||| ||||| || |||||
Sbjct 10792649 CTCAACTTCCAACGTAATTGTTTTCCCAGTCAACGTCTTCACGAAAATTTGCAT 10792702
Score = 158 bits (174), Expect = 2e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| || || |||||||| || ||||| || || |||||||| || ||||| || ||
Sbjct 10792704 CCTCCTCGCAGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGAC 10792763
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||||||| | || || || || || || | || || || || || |||
Sbjct 10792764 AGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 10792823
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||| || || || || || || || || ||| || ||||||| | |||||||
Sbjct 10792824 ATGCCTTCTTTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTACT 10792883
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| ||||| || |||||||| | |||||| ||||| || |||||
Sbjct 10792884 TCCAAAGTGATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCAT 10792930
Score = 141 bits (156), Expect = 2e-28
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308
||| |||||||| ||||| || || || |||||||| || || || | || | || ||
Sbjct 10794314 CAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGACAAAGTGCGTCCGTC 10794373
Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368
||| | || || || ||||| || | | ||| ||||| || || || |||||||||||
Sbjct 10794374 TTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTTGTC 10794433
Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428
|| ||||| || |||||| |||||||| || | | || || ||||||||||||||
Sbjct 10794434 CTGGATCTTAGCTTTGACGTTTTCGATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGT 10794493
Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||| || || | ||||| ||||| ||||||||
Sbjct 10794494 TTTACCAGTCAAAGTCTTCACGAAGATCTGCAT 10794526
>seq3
Length=31381287
Score = 168 bits (186), Expect = 1e-36
Identities = 212/290 (73%), Gaps = 6/290 (2%)
Strand=Plus/Plus
Query 268209 CCCCAGTTGCAATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTT 268268
|||| | || || || ||||| || ||||| || ||| ||||| |||||| || |
Sbjct 28596818 CCCCGGAAGCTATGACGAAGTCGTCCGGCTCGGGCTGCTGCAGCATGAGCCACATGGCCT 28596877
Query 268269 CGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGC 268328
| || |||||| ||||||||||| |||||||| | ||||| ||| || | ||||
Sbjct 28596878 CCACGTAGTCCTTGGCATGGCCCCAGTCGCGCTTCGAGTCCAGGTTGCCTAATTCAAGGC 28596937
Query 268329 ATTTCTGCTTG---CCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGA 268385
| ||| || || || | | || | | || |||||||| || || ||||
Sbjct 28596938 A---CTGAGTGAGCCCCAGGTGGATTTTGGCCACTTCTCGGGTGATTTTGCGCGTGACGA 28596994
Query 268386 ACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGC 268445
| || || |||||| | ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 28596995 AGGTTTCACCACGTCGGGGGCTTTCGTGGTTGAAGAGGATGCCGTTGCAGGCGAACATGC 28597054
Query 268446 CATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCA 268495
| || || |||||||||||||| || ||||||| || | | |||||||
Sbjct 28597055 CGTAAGCTTCACGGTAGTTCACCACGATCCAGTAAGCGTAAAGCTTTGCA 28597104
>seq2
Length=15265516
Score = 147 bits (162), Expect = 4e-30
Identities = 162/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309
|| || | ||| || ||||| || || ||||| || ||||||||||| || | |||||
Sbjct 12970336 AAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGAGAGGGTACGTCCATCC 12970277
Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369
|| | ||| ||||||||||| ||||| | ||| || || || ||||| || || || ||
Sbjct 12970276 TCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCCTCTTTATCC 12970217
Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429
|||||||| || || || |||||| || |||| | || || || | |||||||||
Sbjct 12970216 TGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCGACCTCAAGGGTGATGGTC 12970157
Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
|| || || ||||| || ||||| ||||||||| ||
Sbjct 12970156 TTGCCAGTCAGGGTTTTAACGAAAATCTGCATTGTG 12970121
>seq4
Length=12290766
Score = 140 bits (154), Expect = 6e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || ||||| || || || || ||||| || || |||||||| ||||||||
Sbjct 488939 CCACCTCGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 488998
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | ||||| || | ||| || || || || || | | ||||| ||||| |||
Sbjct 488999 AAAGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGA 489058
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||||||||| ||||| || || ||||| ||||||||||||| | || ||
Sbjct 489059 ATGCCTTCCTTGTCCTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACC 489118
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| || || || || || || ||||| || |||||
Sbjct 489119 TCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921598414777040
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