Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_008953.1
Length=3935
Score E
Sequences producing significant alignments: (Bits) Value
seq10 118 3e-23
seq9 77.0 8e-11
>seq10
Length=7222678
Score = 118 bits (130), Expect = 3e-23
Identities = 333/509 (65%), Gaps = 7/509 (1%)
Strand=Plus/Minus
Query 2974 TATTACCAATGGGTTTTCATCGTATTGTTCATCCAAGCGGTGTTCTTCTCCATTCCGCAG 3033
|| ||||| ||||| | | ||| | ||| ||||||| || | |||| | | |||| |
Sbjct 5458747 TACTACCAGTGGGTCTGCTTCGCCCTCTTCTTCCAAGCCATGCTGTTCTACGTGCCGCGG 5458688
Query 3034 TACATCTGGAAGGTATGTGAAGGAGGGAAAATGAAGACATTGGCTCATGATCTGACTTCA 3093
||| |||||||| || ||||| ||| || |||| ||| | || |||| |
Sbjct 5458687 TACCTCTGGAAGACGTGGGAAGGCGGGCGCATCAAGATGCTGGTCCTGGACCTGAACTAC 5458628
Query 3094 CCGTTCCTGAGCAAAGAGTGCATCACAGAGAAGGTGGATCATTTGATGGATTATTTTTTC 3153
|| || | ||| | || |||| || || | | | | | | || || || ||
Sbjct 5458627 CCCATCGTCAGCGAGGACTGCAAGACGGACAGGAAGCGCCTCCTCGTCGACTACTTCATC 5458568
Query 3154 ATGCAGCTGCACGCGCAAAACTCTTACGCCTACAAATACTTTGGCTGCGAGCTGCTAAAC 3213
| | ||||| ||| |||| ||||||| | | ||| ||||||| |||| |||
Sbjct 5458567 ACCAACTTGCACATGCAGAACTTCTACGCCTTCCGGTTCTTCATCTGCGAGGTGCTCAAC 5458508
Query 3214 TTTGTCAACGTTGTCGCACAGATATGCTTCATGAATGCCTTTATAGGCGAAGACTTTTTG 3273
|| |||||||| || | ||||| | ||||||| | ||| | | || || ||
Sbjct 5458507 TTCGTCAACGTGGTGGGGCAGATCTTCTTCATGGACTACTTCCTCGACGGGGAGTTCAGC 5458448
Query 3274 TTGTACGGAATCTATGTTACCTTCTTCAACCAG--GAAGCCGCCCATCCGAACATGACGA 3331
|||||| | | || | ||||| | || | ||||| || | || ||
Sbjct 5458447 ACCTACGGACGCGACGTCCTCAGCTTCACCGAGATGGAGCCGGAG----GAGCGCGAGGA 5458392
Query 3332 ACCCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTT 3391
||| ||| || ||||| || | | |||| || || || ||||| ||||| ||||
Sbjct 5458391 -CCCGATGTCCCGGGTCTTCCCCAAAGTCACCAAGTGCACGTTCCACAAGTACGGCCCTT 5458333
Query 3392 CGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGA 3451
|||| ||| | | || | ||| || | ||| ||||||| ||| | ||||||||||
Sbjct 5458332 CGGGTTCCGTCCAGAAGTTCGACGGGTTGTGCGTCCTCCCCCTCAACATCGTCAACGAGA 5458273
Query 3452 AGATCTACATTTTCCTCTGGTTCTGGTTC 3480
|||||||| | ||||||||||||||||||
Sbjct 5458272 AGATCTACGTCTTCCTCTGGTTCTGGTTC 5458244
Score = 89.7 bits (98), Expect = 1e-14
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 3377 ACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGA 3436
|||||||||| ||| ||| | ||||||| |||| | | ||||| ||||| ||
Sbjct 5556524 ACAAATACGGCGTTTCCGGCGACATGGAAAAGCACGACGCGATGTGCATTCTCCCCCTGA 5556583
Query 3437 ACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480
|||| |||||||| || |||||||| ||||||||||||||||||
Sbjct 5556584 ACGTCGTCAACGAAAAAATCTACATCTTCCTCTGGTTCTGGTTC 5556627
Score = 84.2 bits (92), Expect = 5e-13
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426
|| ||||| ||||||||||| ||||| ||| || || || | |||| | || ||||||
Sbjct 5484085 TGCACTTTCCACAAATACGGCCCTTCCGGCACCGTGCAACTCCACGACGCCCTTTGCATC 5484144
Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480
| | ||| | ||||||| || |||||||||||||||||||| ||||||
Sbjct 5484145 ATGGCCCTCAACATAATCAACGAAAAAATCTACATTTTCCTCTGGTTTTGGTTC 5484198
Score = 82.4 bits (90), Expect = 2e-12
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 3373 TTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCG 3432
|| ||||| ||||| | || ||||| | | || |||| | | ||||||||||||
Sbjct 5517146 TTCCACAAGTACGGGGCCTCCGGCTCGATCCAGAAGCACGACAGCTTGTGCATCCTCCCG 5517205
Query 3433 GAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480
|||| | ||||||||||||| |||||| ||| ||||||||||||||
Sbjct 5517206 CTGAACATCGTCAACGAGAAGACCTACATCTTCATCTGGTTCTGGTTC 5517253
>seq9
Length=16184580
Score = 77.0 bits (84), Expect = 8e-11
Identities = 86/115 (75%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 3366 ATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCAT 3425
||| || || ||||| | |||| | || ||| | | | || |||| | |||||| |
Sbjct 14633356 ATGCACCTTCCACAAGTTCGGTGCCTCCGGCACTATCCAGAAACACGACGCTCTCTGCGT 14633297
Query 3426 CCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480
|||| | |||| | |||||||||| |||||||||||||||||||| ||||||
Sbjct 14633296 CCTCGCCTTGAACATTCTCAACGAGAAAATCTACATTTTCCTCTGGTTTTGGTTC 14633242
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 12479715807000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |