Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq10 118 3e-23 seq9 77.0 8e-11 >seq10 Length=7222678 Score = 118 bits (130), Expect = 3e-23 Identities = 333/509 (65%), Gaps = 7/509 (1%) Strand=Plus/Minus Query 2974 TATTACCAATGGGTTTTCATCGTATTGTTCATCCAAGCGGTGTTCTTCTCCATTCCGCAG 3033 || ||||| ||||| | | ||| | ||| ||||||| || | |||| | | |||| | Sbjct 5458747 TACTACCAGTGGGTCTGCTTCGCCCTCTTCTTCCAAGCCATGCTGTTCTACGTGCCGCGG 5458688 Query 3034 TACATCTGGAAGGTATGTGAAGGAGGGAAAATGAAGACATTGGCTCATGATCTGACTTCA 3093 ||| |||||||| || ||||| ||| || |||| ||| | || |||| | Sbjct 5458687 TACCTCTGGAAGACGTGGGAAGGCGGGCGCATCAAGATGCTGGTCCTGGACCTGAACTAC 5458628 Query 3094 CCGTTCCTGAGCAAAGAGTGCATCACAGAGAAGGTGGATCATTTGATGGATTATTTTTTC 3153 || || | ||| | || |||| || || | | | | | | || || || || Sbjct 5458627 CCCATCGTCAGCGAGGACTGCAAGACGGACAGGAAGCGCCTCCTCGTCGACTACTTCATC 5458568 Query 3154 ATGCAGCTGCACGCGCAAAACTCTTACGCCTACAAATACTTTGGCTGCGAGCTGCTAAAC 3213 | | ||||| ||| |||| ||||||| | | ||| ||||||| |||| ||| Sbjct 5458567 ACCAACTTGCACATGCAGAACTTCTACGCCTTCCGGTTCTTCATCTGCGAGGTGCTCAAC 5458508 Query 3214 TTTGTCAACGTTGTCGCACAGATATGCTTCATGAATGCCTTTATAGGCGAAGACTTTTTG 3273 || |||||||| || | ||||| | ||||||| | ||| | | || || || Sbjct 5458507 TTCGTCAACGTGGTGGGGCAGATCTTCTTCATGGACTACTTCCTCGACGGGGAGTTCAGC 5458448 Query 3274 TTGTACGGAATCTATGTTACCTTCTTCAACCAG--GAAGCCGCCCATCCGAACATGACGA 3331 |||||| | | || | ||||| | || | ||||| || | || || Sbjct 5458447 ACCTACGGACGCGACGTCCTCAGCTTCACCGAGATGGAGCCGGAG----GAGCGCGAGGA 5458392 Query 3332 ACCCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTT 3391 ||| ||| || ||||| || | | |||| || || || ||||| ||||| |||| Sbjct 5458391 -CCCGATGTCCCGGGTCTTCCCCAAAGTCACCAAGTGCACGTTCCACAAGTACGGCCCTT 5458333 Query 3392 CGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGA 3451 |||| ||| | | || | ||| || | ||| ||||||| ||| | |||||||||| Sbjct 5458332 CGGGTTCCGTCCAGAAGTTCGACGGGTTGTGCGTCCTCCCCCTCAACATCGTCAACGAGA 5458273 Query 3452 AGATCTACATTTTCCTCTGGTTCTGGTTC 3480 |||||||| | |||||||||||||||||| Sbjct 5458272 AGATCTACGTCTTCCTCTGGTTCTGGTTC 5458244 Score = 89.7 bits (98), Expect = 1e-14 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 3377 ACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGA 3436 |||||||||| ||| ||| | ||||||| |||| | | ||||| ||||| || Sbjct 5556524 ACAAATACGGCGTTTCCGGCGACATGGAAAAGCACGACGCGATGTGCATTCTCCCCCTGA 5556583 Query 3437 ACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480 |||| |||||||| || |||||||| |||||||||||||||||| Sbjct 5556584 ACGTCGTCAACGAAAAAATCTACATCTTCCTCTGGTTCTGGTTC 5556627 Score = 84.2 bits (92), Expect = 5e-13 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 || ||||| ||||||||||| ||||| ||| || || || | |||| | || |||||| Sbjct 5484085 TGCACTTTCCACAAATACGGCCCTTCCGGCACCGTGCAACTCCACGACGCCCTTTGCATC 5484144 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480 | | ||| | ||||||| || |||||||||||||||||||| |||||| Sbjct 5484145 ATGGCCCTCAACATAATCAACGAAAAAATCTACATTTTCCTCTGGTTTTGGTTC 5484198 Score = 82.4 bits (90), Expect = 2e-12 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 3373 TTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCG 3432 || ||||| ||||| | || ||||| | | || |||| | | |||||||||||| Sbjct 5517146 TTCCACAAGTACGGGGCCTCCGGCTCGATCCAGAAGCACGACAGCTTGTGCATCCTCCCG 5517205 Query 3433 GAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480 |||| | ||||||||||||| |||||| ||| |||||||||||||| Sbjct 5517206 CTGAACATCGTCAACGAGAAGACCTACATCTTCATCTGGTTCTGGTTC 5517253 >seq9 Length=16184580 Score = 77.0 bits (84), Expect = 8e-11 Identities = 86/115 (75%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 3366 ATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCAT 3425 ||| || || ||||| | |||| | || ||| | | | || |||| | |||||| | Sbjct 14633356 ATGCACCTTCCACAAGTTCGGTGCCTCCGGCACTATCCAGAAACACGACGCTCTCTGCGT 14633297 Query 3426 CCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480 |||| | |||| | |||||||||| |||||||||||||||||||| |||||| Sbjct 14633296 CCTCGCCTTGAACATTCTCAACGAGAAAATCTACATTTTCCTCTGGTTTTGGTTC 14633242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479715807000